Armcx3 (armadillo repeat containing, X-linked 3)

Gene: Armcx3 (armadillo repeat containing, X-linked 3) Rattus norvegicus

Analyze

Symbol:

Armcx3

Name:

armadillo repeat containing, X-linked 3

RGD ID:

1549739

Description:

Predicted to act upstream of or within several processes, including axonal transport of mitochondrion; mitochondrion organization; and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; mitochondrial outer membrane; and nucleus. Predicted to be active in mitochondrion. Orthologous to human ARMCX3 (armadillo repeat containing X-linked 3); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

armadillo repeat-containing X-linked protein 3; LOC367902; similar to ALEX3 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	102,230,464 - 102,234,017 (+)	NCBI		GRCr8
mRatBN7.2	X	97,937,115 - 97,942,098 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	97,936,999 - 97,942,098 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	99,611,404 - 99,614,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	103,128,016 - 103,131,555 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	100,624,550 - 100,628,105 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	105,573,909 - 105,577,480 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	105,573,909 - 105,580,562 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	105,463,207 - 105,466,760 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	122,217,524 - 122,221,077 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	98,976,913 - 98,980,314 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

developmental and epileptic encephalopathy 9 (ISO)

genetic disease (ISO)

isolated growth hormone deficiency type III (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

choline (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP,ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glafenine (EXP)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

ivermectin (ISO)

L-methionine (ISO)

methapyrilene (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP)

thapsigargin (EXP,ISO)

thioacetamide (EXP)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonal transport of mitochondrion (ISO)

mitochondrion organization (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

protein localization (ISO)

Cellular Component

axon cytoplasm (IEA)

cytosol (ISO)

mitochondrial outer membrane (IEA,ISO)

mitochondrion (IBA,ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:19304657	PMID:22569362	PMID:22871113

Genomics

Comparative Map Data

Armcx3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	102,230,464 - 102,234,017 (+)	NCBI		GRCr8
mRatBN7.2	X	97,937,115 - 97,942,098 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	97,936,999 - 97,942,098 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	99,611,404 - 99,614,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	103,128,016 - 103,131,555 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	100,624,550 - 100,628,105 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	105,573,909 - 105,577,480 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	105,573,909 - 105,580,562 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	105,463,207 - 105,466,760 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	122,217,524 - 122,221,077 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	98,976,913 - 98,980,314 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

ARMCX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	101,623,151 - 101,627,843 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	101,622,797 - 101,627,843 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	100,878,141 - 100,882,833 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	100,764,776 - 100,769,487 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	101,398,698 - 101,403,409 (+)	NCBI		Celera
Cytogenetic Map	X	q22.1	NCBI
HuRef	X	90,685,926 - 90,690,637 (+)	NCBI		HuRef
CHM1_1	X	100,771,977 - 100,776,688 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	100,067,782 - 100,072,474 (+)	NCBI		T2T-CHM13v2.0

Armcx3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	133,657,301 - 133,662,206 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	133,657,344 - 133,662,204 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	134,756,552 - 134,761,457 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	134,756,595 - 134,761,455 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	131,291,107 - 131,295,995 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	130,102,961 - 130,107,820 (+)	NCBI		MGSCv36	mm8
Celera	X	117,639,077 - 117,643,870 (+)	NCBI		Celera
Cytogenetic Map	X	E3	NCBI
cM Map	X	56.25	NCBI

Armcx3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955503	7,705,821 - 7,709,142 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955503	7,705,821 - 7,709,169 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARMCX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	101,220,196 - 101,224,929 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	101,223,807 - 101,228,534 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	90,823,379 - 90,828,094 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	100,952,153 - 100,956,868 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

ARMCX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	75,485,994 - 75,490,752 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	75,487,854 - 75,488,993 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	X	76,906,046 - 76,911,545 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	76,906,086 - 76,913,287 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	74,470,333 - 74,475,832 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	76,130,544 - 76,136,044 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	75,893,229 - 75,898,730 (+)	NCBI		UU_Cfam_GSD_1.0

Armcx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	62,847,771 - 62,852,627 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936813	622,520 - 625,971 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936813	622,501 - 627,335 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARMCX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	83,187,979 - 83,197,532 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	83,187,939 - 83,192,693 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	97,049,731 - 97,054,478 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARMCX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	89,936,812 - 89,941,519 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	89,938,667 - 89,939,806 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	14,870,406 - 14,875,437 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Armcx3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624902	957,669 - 962,039 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624902	957,669 - 962,015 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Armcx3
22 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	386
Count of miRNA genes:	220
Interacting mature miRNAs:	263
Transcripts:	ENSRNOT00000029664
Prediction methods:	Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
724551	Glom1	Glomerulus QTL 1	2.8	0.0004	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	X	75294106	120294106	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat

Markers in Region

RH128942

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	97,940,532 - 97,940,717 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	105,577,252 - 105,577,436	NCBI	Rnor6.0
Rnor_5.0	X	105,466,532 - 105,466,716	UniSTS	Rnor5.0
RGSC_v3.4	X	122,220,849 - 122,221,033	UniSTS	RGSC3.4
Celera	X	98,980,086 - 98,980,270	UniSTS
Cytogenetic Map	X	q34	UniSTS

UniSTS:498498

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	97,939,319 - 97,940,054 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	105,576,039 - 105,576,773	NCBI	Rnor6.0
Rnor_5.0	X	105,465,319 - 105,466,053	UniSTS	Rnor5.0
RGSC_v3.4	X	122,219,636 - 122,220,370	UniSTS	RGSC3.4
Celera	X	98,978,873 - 98,979,607	UniSTS
Cytogenetic Map	X	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	43	27	19	10	19	8	11	74	31	34	11	8
Low	1		30	22	9	22				4	7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000029664 ⟹ ENSRNOP00000033859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	97,937,202 - 97,940,739 (+)	Ensembl
Rnor_6.0 Ensembl	X	105,573,909 - 105,577,451 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088760 ⟹ ENSRNOP00000075527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	97,937,798 - 97,940,735 (+)	Ensembl
Rnor_6.0 Ensembl	X	105,575,759 - 105,580,562 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099243 ⟹ ENSRNOP00000090836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	97,937,165 - 97,940,815 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114177 ⟹ ENSRNOP00000086605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	97,937,144 - 97,942,004 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114255 ⟹ ENSRNOP00000086584

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	97,936,999 - 97,942,098 (+)	Ensembl

RefSeq Acc Id:

NM_001014273 ⟹ NP_001014295

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	102,230,464 - 102,234,017 (+)	NCBI
mRatBN7.2	X	97,937,208 - 97,940,761 (+)	NCBI
Rnor_6.0	X	105,573,909 - 105,577,480 (+)	NCBI
Rnor_5.0	X	105,463,207 - 105,466,760 (+)	NCBI
RGSC_v3.4	X	122,217,524 - 122,221,077 (+)	RGD
Celera	X	98,976,913 - 98,980,314 (+)	RGD

Sequence:

show sequence

CAGCTCCCTATTACCCTGAGGGCGGGCGGGCCTGCGGCCGAGGAAAGAAGGAGGCGGAAAAGGA
ATTGTCCCGGATCCCTGCAGTCTTTCCGTAGGTTGCGGTACAACGCCAGGCAAGAGAAGAGGAA
GGAAATTAACCAGATCGGTGAAGGTCGAGTTGAGGGTCTGCTGTAGCAGGTGGCACTGCTTGAA
GCAAGGGAGGAACTTTCCCCGGCGCAGTGGAGATCAGAAAGATTGCTGGGTGTGGCATAAGTCA
CAGGAAAGGAAGAAGGGGCAAGCCGCTGCTTTAAGGAGGTTTACCTCTGAAACCAATTACTGTG
GCCTTGAAGTGACTTGAAGAACATTACTCTCCACAGGCCTGCACTCAGGCCCGAAGCCCTCTTC
CCCTATCTTGAGTGACTACTCTATTTCTTGGTCCCTGCCGTTGCCAGGGACGATTGCATGGGCT
ACGCCAGGAAAGTAGGCTGGGTGACTGCAGGCCTGGTGATTGGGGCTGGAGCCTGCTATTGCAT
TTACAGATTGACCCGAGGAAGAAAGCAGAACAAGGAGAAAATGGCCGAGGGTGGCCCCGGTGAT
GTGGAGGATGCTGGGGACTGTTCTGGGGCCAGGTATAATGACTGGTCTGATGATGATGATGACA
GTAATGAGAGCAAGAGTATAGTTTGGTACCCACCTTGGGCCCGGATTGGCACTGAAGCAGGGAC
CAGAGCTAGAGCCAGGGCAAGAGCCAGGGCTACCAGGGCTCGGAGAGCTGTTCAGAAAAGGGCT
TCTCCTAATTCAGACGATACTGTTTTGTCTCCTCAAGAGTTACAAAAAGTACTTTGTTTGGTTG
AGATGTCTGAAAAGCCTTACATTCTTGAGGCAGCTTTAATTGCTCTGGGTAATAATGCCGCTTA
CGCATTTAATAGAGATATTATTCGCGATTTGGGTGGTCTCCCAATTGTTGCAAAGATTCTCAAT
ACTCGAGATCCCATTGTGAAGGAAAAGGCTTTAATTGTCCTAAATAACTTGAGTGTGAATGCTG
AAAATCAGCGCAGGCTTAAGATATACATGAATCAAGTGTGCGATGACACAGTCACCTCCCGATT
GAACTCGTCTGTGCAGCTGGCTGGACTCAGACTGCTTACAAATATGACTGTTACTAACGAGTAT
CAGCACATCCTTGCTAATTCCATTTCAGACTTTTTTCGTTTATTTTCAGCAGGGAATGAAGAAA
CCAAACTTCAGGTTCTGAAACTCCTTTTGAATCTGGCTGAAAATCCAGCCATGACTAGAGAACT
GCTCGGGGCTCATGTGCCGTCTTCACTGGGCTCCCTCTTTAATAAGAAGGAGTACAAAGAGGTT
ATTCTTAAACTCCTGAGCATTTTTGAGAATATCAATGACAATTTCAAATGGGAAGAAAACGAGC
CTGCTCAGAATCACTTTAGTGAGGGTTCCCTTTTTTTCTTTTTAAAAGAATTTCAAGTGTGTGC
TGATAAAGTCCTGGGAATTGAAAGCCACCATGATTTCCAGGTGAGAGTCAAGGTTGGAAAGTTT
GTGACCAAACTGACTGAGCGGATGTTCCCAAAGAGCCAGGAATAACTTGGTGGCTTTGTAGCAT
AGCAGCAACACACCTTGTAAACTATTCTTTATCTCCACTTTGTTTATATGGCAAAGGAACCCTT
TCAGCTGCCAATTTTGAATGATGAATATCATACTGTATCATCAATGTTGATTGATATTTAGCCA
AGTTTGTTTTCAGGTTTGAGTTGAATGAATGTATTTCACTACTTGTCCTGAAACGTGTTGCATT
TTATCTTGCTGCCCACATTGAAACATTTTTACTGTTCCCTCCCCGTAAGTGACAGTGAACCAAT
TCACCCGAAGTAGGCTCCCTTTTGTCCTTTGCATTGATTTTGTTTGTGCATCTTCAATAAAGTT
TTATGTTAATGCTGGAAAGAAACAACAGAAGAAGAAAGAAATTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014295	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83747	(Get FASTA)	NCBI Sequence Viewer
	EDM07002	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033859
	ENSRNOP00000033859.4
	ENSRNOP00000075527
	ENSRNOP00000075527.2
	ENSRNOP00000086584.1
	ENSRNOP00000086605.1
	ENSRNOP00000090836.1
	ENSRNOP00055020286
	ENSRNOP00055020290
	ENSRNOP00060031083
	ENSRNOP00060031102
	ENSRNOP00065006474
	ENSRNOP00065006477
GenBank Protein	Q5XID7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014295 ⟸ NM_001014273

- UniProtKB:

Q5XID7 (UniProtKB/Swiss-Prot), A0A8I6AF34 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGYARKVGWVTAGLVIGAGACYCIYRLTRGRKQNKEKMAEGGPGDVEDAGDCSGARYNDWSDDD
DDSNESKSIVWYPPWARIGTEAGTRARARARARATRARRAVQKRASPNSDDTVLSPQELQKVLC
LVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKILNTRDPIVKEKALIVLNNLSV
NAENQRRLKIYMNQVCDDTVTSRLNSSVQLAGLRLLTNMTVTNEYQHILANSISDFFRLFSAGN
EETKLQVLKLLLNLAENPAMTRELLGAHVPSSLGSLFNKKEYKEVILKLLSIFENINDNFKWEE
NEPAQNHFSEGSLFFFLKEFQVCADKVLGIESHHDFQVRVKVGKFVTKLTERMFPKSQE

hide sequence

RefSeq Acc Id:

ENSRNOP00000033859 ⟸ ENSRNOT00000029664

RefSeq Acc Id:

ENSRNOP00000075527 ⟸ ENSRNOT00000088760

RefSeq Acc Id:

ENSRNOP00000086584 ⟸ ENSRNOT00000114255

RefSeq Acc Id:

ENSRNOP00000090836 ⟸ ENSRNOT00000099243

RefSeq Acc Id:

ENSRNOP00000086605 ⟸ ENSRNOT00000114177

Protein Domains

Armadillo repeat-containing

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XID7-F1-model_v2	AlphaFold	Q5XID7	1-379	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701936

Promoter ID:

EPDNEW_R12460

Type:

initiation region

Name:

Armcx3_1

Description:

armadillo repeat containing, X-linked 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	105,573,859 - 105,573,919	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1549739	AgrOrtholog
BioCyc Gene	G2FUF-1671	BioCyc
Ensembl Genes	ENSRNOG00000025730	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055014461	UniProtKB/Swiss-Prot
	ENSRNOG00060021764	UniProtKB/Swiss-Prot
	ENSRNOG00065006014	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000029664	ENTREZGENE
	ENSRNOT00000029664.6	UniProtKB/Swiss-Prot
	ENSRNOT00000088760	UniProtKB/TrEMBL
	ENSRNOT00000088760.2	UniProtKB/Swiss-Prot
	ENSRNOT00000099243.1	UniProtKB/TrEMBL
	ENSRNOT00000114177.1	UniProtKB/Swiss-Prot
	ENSRNOT00000114255.1	UniProtKB/Swiss-Prot
	ENSRNOT00055024822	UniProtKB/Swiss-Prot
	ENSRNOT00055024832	UniProtKB/Swiss-Prot
	ENSRNOT00060037691	UniProtKB/Swiss-Prot
	ENSRNOT00060037710	UniProtKB/Swiss-Prot
	ENSRNOT00065009085	UniProtKB/Swiss-Prot
	ENSRNOT00065009088	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7192274	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARM-rpt_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Armadillo	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:367902	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94671	IMAGE-MGC_LOAD
NCBI Gene	367902	ENTREZGENE
PANTHER	ARMADILLO REPEAT CONTAINING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARMADILLO REPEAT-CONTAINING X-LINKED PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Arm_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Armcx3	PhenoGen
PROSITE	ARM_REPEAT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025730	RatGTEx
	ENSRNOG00055014461	RatGTEx
	ENSRNOG00060021764	RatGTEx
	ENSRNOG00065006014	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2KAU2_RAT	UniProtKB/TrEMBL
	A0A8I6AF34	ENTREZGENE, UniProtKB/TrEMBL
	ARMX3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Armcx3	armadillo repeat containing, X-linked 3	LOC367902	similar to ALEX3 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-15	LOC367902	similar to ALEX3 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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