Dctd (dCMP deaminase) - Rat Genome Database

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Gene: Dctd (dCMP deaminase) Rattus norvegicus
Analyze
Symbol: Dctd
Name: dCMP deaminase
RGD ID: 1359671
Description: Predicted to enable deoxyribonucleoside 5'-monophosphate N-glycosidase activity and identical protein binding activity. Predicted to be involved in nucleoside salvage. Predicted to be active in cytoplasm. Orthologous to human DCTD (dCMP deaminase); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; gemcitabine pharmacodynamics pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: deoxycytidylate deaminase; LOC290741; similar to 6030466N05Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81650,799,699 - 50,831,398 (-)NCBIGRCr8
mRatBN7.21644,066,952 - 44,098,654 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,055,128 - 44,098,446 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1649,476,334 - 49,507,945 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01652,836,910 - 52,868,522 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01648,119,292 - 48,151,056 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,177,144 - 47,222,850 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,177,145 - 47,208,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01646,903,566 - 46,948,682 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41647,240,976 - 47,261,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11647,241,054 - 47,261,972 (-)NCBI
Celera1642,085,553 - 42,116,478 (-)NCBICelera
Cytogenetic Map16q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8448179   PMID:15489334   PMID:16189514   PMID:21988832   PMID:23376485  


Genomics

Comparative Map Data
Dctd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81650,799,699 - 50,831,398 (-)NCBIGRCr8
mRatBN7.21644,066,952 - 44,098,654 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,055,128 - 44,098,446 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1649,476,334 - 49,507,945 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01652,836,910 - 52,868,522 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01648,119,292 - 48,151,056 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,177,144 - 47,222,850 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,177,145 - 47,208,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01646,903,566 - 46,948,682 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41647,240,976 - 47,261,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11647,241,054 - 47,261,972 (-)NCBI
Celera1642,085,553 - 42,116,478 (-)NCBICelera
Cytogenetic Map16q11NCBI
DCTD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384182,890,091 - 182,917,611 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4182,890,060 - 182,917,936 (-)EnsemblGRCh38hg38GRCh38
GRCh374183,811,244 - 183,838,764 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364184,048,238 - 184,075,624 (-)NCBINCBI36Build 36hg18NCBI36
Build 344184,186,406 - 184,211,870NCBI
Celera4181,145,398 - 181,172,940 (-)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4179,572,300 - 179,599,627 (-)NCBIHuRef
CHM1_14183,785,829 - 183,815,055 (-)NCBICHM1_1
T2T-CHM13v2.04186,233,649 - 186,261,170 (-)NCBIT2T-CHM13v2.0
Dctd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39848,552,127 - 48,594,702 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl848,552,127 - 48,606,268 (+)EnsemblGRCm39 Ensembl
GRCm38848,099,092 - 48,141,667 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl848,099,092 - 48,153,233 (+)EnsemblGRCm38mm10GRCm38
MGSCv37849,184,446 - 49,227,021 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36849,608,814 - 49,640,477 (+)NCBIMGSCv36mm8
Celera850,777,931 - 50,820,444 (+)NCBICelera
Cytogenetic Map8B1.1- B1.2NCBI
cM Map826.98NCBI
Dctd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,825,672 - 25,850,862 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540325,825,366 - 25,849,511 (+)NCBIChiLan1.0ChiLan1.0
DCTD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23180,635,393 - 180,666,559 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14180,996,131 - 181,023,642 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04175,079,416 - 175,106,756 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14187,303,588 - 187,330,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4187,303,591 - 187,330,527 (-)Ensemblpanpan1.1panPan2
DCTD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11647,350,493 - 47,376,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1647,350,357 - 47,375,127 (+)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1647,350,357 - 47,375,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3436,552,121 - 36,579,325 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01649,576,252 - 49,603,441 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1649,576,300 - 49,617,975 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11647,539,487 - 47,566,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01648,152,348 - 48,179,540 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01648,292,717 - 48,319,923 (+)NCBIUU_Cfam_GSD_1.0
Dctd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494331,929,216 - 32,043,653 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365546,088,538 - 6,118,976 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365546,088,544 - 6,110,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1544,466,315 - 44,490,831 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11544,466,312 - 44,492,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21551,059,863 - 51,085,986 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCTD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17128,874,164 - 128,902,036 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7128,874,117 - 128,901,910 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037109,082,563 - 109,110,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dctd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476913,649,016 - 13,674,590 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476913,649,603 - 13,674,578 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dctd
209 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:858
Count of miRNA genes:280
Interacting mature miRNAs:348
Transcripts:ENSRNOT00000017670, ENSRNOT00000059459
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164302484250166018Rat

Markers in Region
RH143153  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1642,115,658 - 42,115,811UniSTS
RH 3.4 Map16401.3UniSTS
Cytogenetic Map16q11UniSTS
BI277846  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,067,141 - 44,067,298 (+)MAPPERmRatBN7.2
Rnor_6.01647,177,334 - 47,177,490NCBIRnor6.0
Rnor_5.01646,903,756 - 46,903,912UniSTSRnor5.0
RGSC_v3.41647,241,166 - 47,241,322UniSTSRGSC3.4
Celera1642,085,743 - 42,085,899UniSTS
RH 3.4 Map16437.21UniSTS
Cytogenetic Map16q11UniSTS
BI284767  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,067,266 - 44,067,449 (+)MAPPERmRatBN7.2
Rnor_6.01647,177,459 - 47,177,641NCBIRnor6.0
Rnor_5.01646,903,881 - 46,904,063UniSTSRnor5.0
RGSC_v3.41647,241,291 - 47,241,473UniSTSRGSC3.4
Celera1642,085,868 - 42,086,050UniSTS
RH 3.4 Map16404.8UniSTS
Cytogenetic Map16q11UniSTS
RH138762  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,067,151 - 44,067,287 (+)MAPPERmRatBN7.2
Rnor_6.01647,177,344 - 47,177,479NCBIRnor6.0
Rnor_5.01646,903,766 - 46,903,901UniSTSRnor5.0
RGSC_v3.41647,241,176 - 47,241,311UniSTSRGSC3.4
Celera1642,085,753 - 42,085,888UniSTS
Cytogenetic Map16q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 20 20 12 11 12 24 20 33
Low 1 23 34 26 8 26 6 9 50 15 8 11 6
Below cutoff 3 3 3 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017670   ⟹   ENSRNOP00000017670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,066,952 - 44,098,446 (-)Ensembl
Rnor_6.0 Ensembl1647,177,145 - 47,208,110 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000059459   ⟹   ENSRNOP00000056214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,066,956 - 44,098,415 (-)Ensembl
Rnor_6.0 Ensembl1647,177,148 - 47,207,487 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108809   ⟹   ENSRNOP00000091846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,090,386 - 44,098,436 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113960   ⟹   ENSRNOP00000095707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,055,128 - 44,098,446 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118509   ⟹   ENSRNOP00000095478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,066,951 - 44,098,446 (-)Ensembl
RefSeq Acc Id: NM_001013882   ⟹   NP_001013904
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81650,799,699 - 50,831,186 (-)NCBI
mRatBN7.21644,066,952 - 44,098,442 (-)NCBI
Rnor_6.01647,177,144 - 47,207,430 (-)NCBI
Rnor_5.01646,903,566 - 46,948,682 (-)NCBI
RGSC_v3.41647,240,976 - 47,261,942 (-)RGD
Celera1642,085,553 - 42,116,478 (-)RGD
Sequence:
RefSeq Acc Id: NM_001161512   ⟹   NP_001154984
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81650,799,699 - 50,831,159 (-)NCBI
mRatBN7.21644,066,952 - 44,098,415 (-)NCBI
Rnor_6.01647,177,144 - 47,222,850 (-)NCBI
Rnor_5.01646,903,566 - 46,948,682 (-)NCBI
RGSC_v3.41647,240,976 - 47,261,942 (-)RGD
Celera1642,085,553 - 42,116,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094374   ⟹   XP_038950302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81650,799,699 - 50,831,398 (-)NCBI
mRatBN7.21644,066,952 - 44,098,654 (-)NCBI
RefSeq Acc Id: XM_039094376   ⟹   XP_038950304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81650,799,699 - 50,831,398 (-)NCBI
mRatBN7.21644,066,952 - 44,098,654 (-)NCBI
RefSeq Acc Id: XM_063275229   ⟹   XP_063131299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81650,799,699 - 50,831,350 (-)NCBI
RefSeq Acc Id: XR_010058286
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81650,801,009 - 50,831,398 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001013904   ⟸   NM_001013882
- Peptide Label: isoform 1
- UniProtKB: A0A0A0MXX3 (UniProtKB/TrEMBL),   A6JPJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001154984   ⟸   NM_001161512
- Peptide Label: isoform 2
- UniProtKB: D3ZXS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000056214   ⟸   ENSRNOT00000059459
RefSeq Acc Id: ENSRNOP00000017670   ⟸   ENSRNOT00000017670
RefSeq Acc Id: XP_038950304   ⟸   XM_039094376
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ATK1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950302   ⟸   XM_039094374
- Peptide Label: isoform X1
- UniProtKB: A0A0A0MXX3 (UniProtKB/TrEMBL),   A6JPJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000095478   ⟸   ENSRNOT00000118509
RefSeq Acc Id: ENSRNOP00000091846   ⟸   ENSRNOT00000108809
RefSeq Acc Id: ENSRNOP00000095707   ⟸   ENSRNOT00000113960
RefSeq Acc Id: XP_063131299   ⟸   XM_063275229
- Peptide Label: isoform X2
- UniProtKB: D3ZXS5 (UniProtKB/TrEMBL)
Protein Domains
CMP/dCMP-type deaminase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M9G0-F1-model_v2 AlphaFold Q5M9G0 1-178 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359671 AgrOrtholog
BioCyc Gene G2FUF-11426 BioCyc
BioCyc Pathway PWY-7210 [pyrimidine deoxyribonucleotides biosynthesis from CTP] BioCyc
BioCyc Pathway Image PWY-7210 BioCyc
Ensembl Genes ENSRNOG00000013215 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017670 ENTREZGENE
  ENSRNOT00000017670.9 UniProtKB/TrEMBL
  ENSRNOT00000059459 ENTREZGENE
  ENSRNOT00000059459.5 UniProtKB/TrEMBL
  ENSRNOT00000108809.1 UniProtKB/TrEMBL
  ENSRNOT00000113960.1 UniProtKB/TrEMBL
  ENSRNOT00000118509 ENTREZGENE
  ENSRNOT00000118509.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7125992 IMAGE-MGC_LOAD
InterPro APOBEC/CMP_deaminase_Zn-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CMP_dCMP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cytidine_deaminase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  dCMP_deaminase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  dCMP_deaminase-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Deoxycytidylate_deaminase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290741 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:95078 IMAGE-MGC_LOAD
NCBI Gene 290741 ENTREZGENE
PANTHER DEOXYCYTIDYLATE DEAMINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11086 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam dCMP_cyt_deam_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dctd PhenoGen
PIRSF dCMP_deaminase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CYT_DCMP_DEAMINASES_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CYT_DCMP_DEAMINASES_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013215 RatGTEx
Superfamily-SCOP SSF53927 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MXX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AUD8_RAT UniProtKB/TrEMBL
  A0A8I6B368_RAT UniProtKB/TrEMBL
  A6JPJ8 ENTREZGENE, UniProtKB/TrEMBL
  A6JPK0_RAT UniProtKB/TrEMBL
  D3ZXS5 ENTREZGENE, UniProtKB/TrEMBL
  DCTD_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Dctd  dCMP deaminase  LOC290741  similar to 6030466N05Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC290741  similar to 6030466N05Rik protein      Symbol and Name status set to provisional 70820 PROVISIONAL