Ube2j2 (ubiquitin-conjugating enzyme E2, J2)

Gene: Ube2j2 (ubiquitin-conjugating enzyme E2, J2) Rattus norvegicus

Analyze

Symbol:

Ube2j2

Name:

ubiquitin-conjugating enzyme E2, J2

RGD ID:

1359523

Description:

Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein targeting to mitochondrion; protein K6-linked ubiquitination; and proteolysis involved in protein catabolic process. Predicted to be located in membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in endoplasmic reticulum and nucleus. Orthologous to human UBE2J2 (ubiquitin conjugating enzyme E2 J2); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; Parkinson's disease pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH bis(2-ethylhexyl) phthalate; bisphenol A; fipronil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC94113; similar to Ubc6p homolog; ubiquitin-conjugating enzyme E2 J2; ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast); ubiquitin-conjugating enzyme E2, J2 homolog; ubiquitin-conjugating enzyme E2, J2 homolog (yeast)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBE2J2 (ubiquitin conjugating enzyme E2 J2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ube2j2 (ubiquitin-conjugating enzyme E2J 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ube2j2 (ubiquitin conjugating enzyme E2 J2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBE2J2 (ubiquitin conjugating enzyme E2 J2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBE2J2 (ubiquitin conjugating enzyme E2 J2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ube2j2 (ubiquitin conjugating enzyme E2 J2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBE2J2 (ubiquitin conjugating enzyme E2 J2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBE2J2 (ubiquitin conjugating enzyme E2 J2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ube2j2 (ubiquitin conjugating enzyme E2 J2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	UBE2J2 (ubiquitin conjugating enzyme E2 J2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ube2j2 (ubiquitin-conjugating enzyme E2J 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ube2j2 (ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5823	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBC6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ubc-26	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ube2j2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,815,607 - 171,830,037 (+)	NCBI		GRCr8
mRatBN7.2	5	166,533,374 - 166,547,811 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,533,418 - 166,547,804 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	169,238,138 - 169,252,559 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,059,561 - 171,073,983 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	171,022,094 - 171,036,517 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,372,659 - 173,387,084 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,372,669 - 173,387,104 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,848,287 - 176,862,703 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,782,311 - 172,796,727 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,792,805 - 172,807,219 (+)	NCBI
Celera	5	164,734,099 - 164,748,533 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

congenital myasthenic syndrome 8 (ISO)

dilated cardiomyopathy 1LL (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

genetic disease (ISO)

Goldberg-Shprintzen syndrome (ISO)

immunodeficiency 16 (ISO)

immunodeficiency 38 (ISO)

Joubert syndrome 25 (ISO)

Neurodevelopmental Disorders (ISO)

Peroxisome Biogenesis Disorder, Complementation Group 7 (ISO)

Shprintzen-Goldberg Craniosynostosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

acetohydrazide (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

dioxygen (ISO)

ethanol (ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

gallic acid (ISO)

irinotecan (ISO)

lead(0) (ISO)

MeIQx (ISO)

methotrexate (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ERAD pathway (IBA,ISO)

positive regulation of protein targeting to mitochondrion (ISO)

protein K6-linked ubiquitination (ISO)

protein polyubiquitination (IBA)

ubiquitin-dependent protein catabolic process (ISO)

Cellular Component

endoplasmic reticulum (IBA,ISO)

membrane (IEA)

nucleus (IBA)

ubiquitin ligase complex (ISO)

Molecular Function

protein binding (ISO)

ubiquitin conjugating enzyme activity (IBA,ISO)

ubiquitin protein ligase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Endoplasmic Reticulum-associated degradation pathway (IEA)

Parkinson's disease pathway (IEA)

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11278356	PMID:20061386	PMID:24019521	PMID:24270810	PMID:24807418

Genomics

Comparative Map Data

Ube2j2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,815,607 - 171,830,037 (+)	NCBI		GRCr8
mRatBN7.2	5	166,533,374 - 166,547,811 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,533,418 - 166,547,804 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	169,238,138 - 169,252,559 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,059,561 - 171,073,983 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	171,022,094 - 171,036,517 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,372,659 - 173,387,084 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,372,669 - 173,387,104 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,848,287 - 176,862,703 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,782,311 - 172,796,727 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,792,805 - 172,807,219 (+)	NCBI
Celera	5	164,734,099 - 164,748,533 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

UBE2J2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,253,912 - 1,273,854 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,253,909 - 1,273,864 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,189,292 - 1,209,234 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,179,155 - 1,199,097 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	1,229,216 - 1,249,157	NCBI
Celera	1	1,373,022 - 1,393,007 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	461,268 - 480,938 (-)	NCBI		HuRef
CHM1_1	1	1,175,791 - 1,196,283 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	682,910 - 702,871 (-)	NCBI		T2T-CHM13v2.0

Ube2j2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	156,028,270 - 156,044,061 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	156,028,288 - 156,044,061 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,943,813 - 155,959,604 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,943,831 - 155,959,604 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	155,317,940 - 155,333,713 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,787,631 - 154,803,404 (+)	NCBI		MGSCv36	mm8
Celera	4	158,206,511 - 158,222,564 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	87.66	NCBI

Ube2j2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,524,459 - 9,540,562 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	9,519,467 - 9,539,666 (+)	NCBI	ChiLan1.0	ChiLan1.0

UBE2J2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,953,111 - 226,973,160 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,649,883 - 225,669,945 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	8,756 - 28,672 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,211,502 - 1,231,813 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,211,502 - 1,231,530 (-)	Ensembl	panpan1.1		panPan2

UBE2J2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,440,394 - 56,455,491 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,441,821 - 56,455,460 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,517,299 - 56,532,402 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,643,223 - 56,658,336 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,643,248 - 56,658,448 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,633,956 - 56,649,057 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,526,236 - 56,541,339 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,916,237 - 56,931,340 (-)	NCBI		UU_Cfam_GSD_1.0

Ube2j2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,590,730 - 27,607,014 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,862,578 - 1,875,248 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,862,577 - 1,875,216 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBE2J2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,555,488 - 63,568,017 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,556,134 - 63,568,080 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,970,220 - 57,982,129 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBE2J2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	130,174,207 - 130,192,723 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	130,174,223 - 130,195,150 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	34,742,534 - 34,762,357 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ube2j2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	8,326,781 - 8,347,370 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	8,326,592 - 8,347,108 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ube2j2
41 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	63
Count of miRNA genes:	51
Interacting mature miRNAs:	59
Transcripts:	ENSRNOT00000026752
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	154828214	166875058	Rat

Markers in Region

AA819755

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,547,523 - 166,547,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,386,797 - 173,386,944	NCBI	Rnor6.0
Rnor_5.0	5	176,862,416 - 176,862,563	UniSTS	Rnor5.0
RGSC_v3.4	5	172,796,440 - 172,796,587	UniSTS	RGSC3.4
Celera	5	164,748,246 - 164,748,393	UniSTS
RH 3.4 Map	5	1173.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

D4Mon53

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,532,046 - 166,532,111 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,371,323 - 173,371,387	NCBI	Rnor6.0
Rnor_5.0	5	176,846,941 - 176,847,005	UniSTS	Rnor5.0
RGSC_v3.4	5	172,780,965 - 172,781,029	UniSTS	RGSC3.4
Celera	5	164,732,763 - 164,732,827	UniSTS
Cytogenetic Map	5	q36	UniSTS

D4Mon54

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,532,405 - 166,532,576 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,371,681 - 173,371,849	NCBI	Rnor6.0
Rnor_5.0	5	176,847,299 - 176,847,467	UniSTS	Rnor5.0
RGSC_v3.4	5	172,781,323 - 172,781,491	UniSTS	RGSC3.4
Celera	5	164,733,121 - 164,733,289	UniSTS
Cytogenetic Map	5	q36	UniSTS

D4Mon59

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,540,597 - 166,540,811 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,379,871 - 173,380,084	NCBI	Rnor6.0
Rnor_5.0	5	176,855,489 - 176,855,702	UniSTS	Rnor5.0
RGSC_v3.4	5	172,789,513 - 172,789,726	UniSTS	RGSC3.4
Celera	5	164,741,320 - 164,741,533	UniSTS
Cytogenetic Map	5	q36	UniSTS

D4Mon60

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,542,507 - 166,542,729 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,381,781 - 173,382,002	NCBI	Rnor6.0
Rnor_5.0	5	176,857,400 - 176,857,621	UniSTS	Rnor5.0
RGSC_v3.4	5	172,791,424 - 172,791,645	UniSTS	RGSC3.4
Celera	5	164,743,230 - 164,743,451	UniSTS
Cytogenetic Map	5	q36	UniSTS

AA819755

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,547,436 - 166,547,650 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,386,710 - 173,386,923	NCBI	Rnor6.0
Rnor_5.0	5	176,862,329 - 176,862,542	UniSTS	Rnor5.0
RGSC_v3.4	5	172,796,353 - 172,796,566	UniSTS	RGSC3.4
Celera	5	164,748,159 - 164,748,372	UniSTS
RH 3.4 Map	5	1173.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000026752 ⟹ ENSRNOP00000026752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	166,536,959 - 166,547,804 (+)	Ensembl
Rnor_6.0 Ensembl	5	173,372,669 - 173,387,081 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077602 ⟹ ENSRNOP00000074553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	166,533,418 - 166,547,804 (+)	Ensembl
Rnor_6.0 Ensembl	5	173,373,888 - 173,387,104 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094080 ⟹ ENSRNOP00000082034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	166,538,352 - 166,547,475 (+)	Ensembl

RefSeq Acc Id:

NM_001007655 ⟹ NP_001007656

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,815,612 - 171,830,037 (+)	NCBI
mRatBN7.2	5	166,533,386 - 166,547,811 (+)	NCBI
Rnor_6.0	5	173,372,659 - 173,387,084 (+)	NCBI
Rnor_5.0	5	176,848,287 - 176,862,703 (+)	NCBI
RGSC_v3.4	5	172,782,311 - 172,796,727 (+)	RGD
Celera	5	164,734,099 - 164,748,533 (+)	NCBI

Sequence:

show sequence

GCCGTCCCTTGAGCGGCCATCTTGGAAGCTGAGCGACCGTAGCAGCGGAGAGGCTGCGGCGGGT
GCGGTGGGCTTAGTCCCAGCGCGGGTGCGGCTCACGGCGCGGGCCCCACTCTTCCGCACCCTGC
TCCGGCCTTGGCCACAGCGAACTGAACGCGGTAGCGGCCTCAGGGAGAGGTGAGCGCTCGCGGG
CTGCGCGGGGCCTTGGGCCGCTCGTTCGCCCCGCCGGAGCCGGCTGCAGCGGCGGGCGGGGACT
CGGGGACTCCACACGTCGGGTCCCGTTCGTTACGTCGCCGGCTGTGTCCGGACCCGGAGCGTCC
CTTCGCGGACCCGAGGTGCTGGGCAAGTTGAGCTCTCTGGCCCACATGGCTTCTGAAGCTAAGA
ACTTGGGGACAATGCTTTCTGGAAGCATTTCTTGGCCATGCTGGACTGTAACCTTGTTCCTGGT
GTGAGCATTCTTGGATGCATCAGGCAAAAGCCCTTGATTCTGCCAGAAAGATGAGCAGTAACAG
CAATAAGAGAGCTCCAACAACTGCGACACAAAGGTTGAAACAGGACTACCTTCGAATTAAGAAA
GACCCAGTGCCTTACATCTGTGCGGAGCCCCTCCCTTCAAATATTCTTGAATGGCATTATGTTG
TCCGAGGCCCTGAGATGACTCCTTATGAAGGTGGCTATTATCATGGAAAACTAATTTTTCCCAG
AGAATTTCCATTTAAGCCTCCTAGTATTTACATGATAACCCCCAATGGAAGATTTAAGTGCAAC
ACAAGGCTGTGTCTCTCCATCACAGATTTCCATCCAGATACATGGAATCCAGCGTGGTCCGTCT
CCACCATTCTAACAGGGCTCCTGAGCTTTATGGTGGAGAAAGGCCCCACCCTGGGGAGCATAGA
GACATCGGACTTCACGAAAAAACAGCTGGCAGCACAGAGTCTAGTGTTTAATTTAAAAGATAAA
GTCTTCTGTGAATTATTTCCTGAAGTTGTGGAGGAAATTAAACAGAAACAGAAAGCACAAGATG
AACTAAGTAACAGGCCCCAGAATCTTCCTTTGCCAGACGTGGTTCCTGATGGGGAGATGCACCG
TGGCCAGAATGGGATCCAGCTCCTCAATGGGCATGCACCTGCTGCTGGCCCAAACCTTGCTGGG
CTCCCACAGGCCAACAGGCATCATGGACTCCTGGGCGGCGCTTTGGCGAACTTGTTTGTTATAG
TTGGGTTTGCGGCCTTTGCCTACACGGTCAAATACGTGCTGAGAAGCATAGCACAGGAGTGAGG
TTCACAAGCCACAACCTGCAGTTGCTGCTGAGGGACACAGGGGCCAGAGCTTGATGCAGGCGAG
ACGGACATGCTGCTGAGCACAGGGTGGCCTGCCGGACTCCTGGGCTTCACTTTTTAAAAACCTT
AAACAGAAAGCAAAAACCAAAATGTGATCTGGAGGAGATTGGAGGTTGACATGGACAGTGCCAC
TCACGCTTTGGTTTTACTGCTTATCTCCTGTGTTGTCTTTTGAACCTGTTTAGTAAACCTGTTT
TGTTTGTTTTGTTTTGTTTTGTTTTTCATTTTATTAGATTTGGTCACTTAAAAATATAAAACGT
TAATGCCTATCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239554 ⟹ XP_006239616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,815,609 - 171,830,037 (+)	NCBI
mRatBN7.2	5	166,533,379 - 166,547,811 (+)	NCBI
Rnor_6.0	5	173,372,686 - 173,387,084 (+)	NCBI
Rnor_5.0	5	176,848,287 - 176,862,703 (+)	NCBI

Sequence:

show sequence

GCTGAGCGACCGTAGCAGCGGAGAGGCTGCGGCGGGTGCGGTGGGCTTAGTCCCAGCGCGGGTG
CGGCTCACGGCGCGGGCCCCACTCTTCCGCACCCTGCTCCGGCCTTGGCCACAGCGAACTGAAC
GCGGTAGCGGCCTCAGGGAGAGGTGCTGGGCAAGTTGAGCTCTCTGGCCCACATGGCTTCTGAA
GCTAAGAACTTGGGGACAATGCTTTCTGGAAGCATTTCTTGGCCATGCTGGACTGTAACCTTGT
TCCTGGTGTGAGCATTCTTGGATGCATCAGGCAAAAGCCCTTGATTCTGCCAGAAAGATGAGCA
GTAACAGCAATAAGAGAGCTCCAACAACTGCGACACAAAGGTTGAAACAGGACTACCTTCGAAT
TAAGAAAGACCCAGTGCCTTACATCTGTGCGGAGCCCCTCCCTTCAAATATTCTTGAATGGCAT
TATGTTGTCCGAGGCCCTGAGATGACTCCTTATGAAGGTGGCTATTATCATGGAAAACTAATTT
TTCCCAGAGAATTTCCATTTAAGCCTCCTAGTATTTACATGATAACCCCCAATGGAAGATTTAA
GTGCAACACAAGGCTGTGTCTCTCCATCACAGATTTCCATCCAGATACATGGAATCCAGCGTGG
TCCGTCTCCACCATTCTAACAGGGCTCCTGAGCTTTATGGTGGAGAAAGGCCCCACCCTGGGGA
GCATAGAGACATCGGACTTCACGAAAAAACAGCTGGCAGCACAGAGTCTAGTGTTTAATTTAAA
AGATAAAGTCTTCTGTGAATTATTTCCTGAAGTTGTGGAGGAAATTAAACAGAAACAGAAAGCA
CAAGATGAACTAAGTAACAGGCCCCAGAATCTTCCTTTGCCAGACGTGGTTCCTGATGGGGAGA
TGCACCGTGGCCAGAATGGGATCCAGCTCCTCAATGGGCATGCACCTGCTGCTGGCCCAAACCT
TGCTGGGCTCCCACAGGCCAACAGGCATCATGGACTCCTGGGCGGCGCTTTGGCGAACTTGTTT
GTTATAGTTGGGTTTGCGGCCTTTGCCTACACGGTCAAATACGTGCTGAGAAGCATAGCACAGG
AGTGAGGTTCACAAGCCACAACCTGCAGTTGCTGCTGAGGGACACAGGGGCCAGAGCTTGATGC
AGGCGAGACGGACATGCTGCTGAGCACAGGGTGGCCTGCCGGACTCCTGGGCTTCACTTTTTAA
AAACCTTAAACAGAAAGCAAAAACCAAAATGTGATCTGGAGGAGATTGGAGGTTGACATGGACA
GTGCCACTCACGCTTTGGTTTTACTGCTTATCTCCTGTGTTGTCTTTTGAACCTGTTTAGTAAA
CCTGTTTTGTTTGTTTTGTTTTGTTTTGTTTTTCATTTTATTAGATTTGGTCACTTAAAAATAT
AAAACGTTAATGCCTATCAAA

hide sequence

RefSeq Acc Id:

XM_006239555 ⟹ XP_006239617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,815,609 - 171,830,037 (+)	NCBI
mRatBN7.2	5	166,533,379 - 166,547,811 (+)	NCBI
Rnor_6.0	5	173,372,705 - 173,387,084 (+)	NCBI
Rnor_5.0	5	176,848,287 - 176,862,703 (+)	NCBI

Sequence:

show sequence

GGAGAGGCTGCGGCGGGTGCGGTGGGCTTAGTCCCAGCGCGGGTGCGGCTCACGGCGCGGGCCC
CACTCTTCCGCACCCTGCTCCGGCCTTGGCCACAGCGAACTGAACGCGGTAGCGGCCTCAGGGA
GAGGTGAGCGCTCGCGGGCTGCGCGGGGCCTTGGGCCGCTCGTTCGCCCCGCCGGAGCCGGCTG
CAGCGGCGGGCGGGGACTCGGGGACTCCACACGTCGGGTCCCGTTCGTTACGTCGCCGGCTGTG
TCCGGACCCGGAGCGTCCCTTCGCGGACCCGAGGCCACAGTCTTATTTCCCACGGTCACCTAAC
CTGTGTGTCCAGAAGAAAAAAGAACTACCACCTTGGCACCGTGATGAGGGACTGAAAAAAGCCT
GCTGCCCTGCTAGTGACTGGCTGCTTCCTGTCACCTTCCATCTCCTAGGAGAGCCATGAAAGAT
ATTGCTGTTCTGACTGAGGTGCTGGGCAAGTTGAGCTCTCTGGCCCACATGGCTTCTGAAGCTA
AGAACTTGGGGACAATGCTTTCTGGAAGCATTTCTTGGCCATGCTGGACTGTAACCTTGTTCCT
GGTGTGAGCATTCTTGGATGCATCAGGCAAAAGCCCTTGATTCTGCCAGAAAGATGAGCAGTAA
CAGCAATAAGAGAGCTCCAACAACTGCGACACAAAGGTTGAAACAGGACTACCTTCGAATTAAG
AAAGACCCAGTGCCTTACATCTGTGCGGAGCCCCTCCCTTCAAATATTCTTGAATGGCATTATG
TTGTCCGAGGCCCTGAGATGACTCCTTATGAAGGTGGCTATTATCATGGAAAACTAATTTTTCC
CAGAGAATTTCCATTTAAGCCTCCTAGTATTTACATGATAACCCCCAATGGAAGATTTAAGTGC
AACACAAGGCTGTGTCTCTCCATCACAGATTTCCATCCAGATACATGGAATCCAGCGTGGTCCG
TCTCCACCATTCTAACAGGGCTCCTGAGCTTTATGGTGGAGAAAGGCCCCACCCTGGGGAGCAT
AGAGACATCGGACTTCACGAAAAAACAGCTGGCAGCACAGAGTCTAGTGTTTAATTTAAAAGAT
AAAGTCTTCTGTGAATTATTTCCTGAAGTTGTGGAGGAAATTAAACAGAAACAGAAAGCACAAG
ATGAACTAAGTAACAGGCCCCAGAATCTTCCTTTGCCAGACGTGGTTCCTGATGGGGAGATGCA
CCGTGGCCAGAATGGGATCCAGCTCCTCAATGGGCATGCACCTGCTGCTGGCCCAAACCTTGCT
GGGCTCCCACAGGCCAACAGGCATCATGGACTCCTGGGCGGCGCTTTGGCGAACTTGTTTGTTA
TAGTTGGGTTTGCGGCCTTTGCCTACACGGTCAAATACGTGCTGAGAAGCATAGCACAGGAGTG
AGGTTCACAAGCCACAACCTGCAGTTGCTGCTGAGGGACACAGGGGCCAGAGCTTGATGCAGGC
GAGACGGACATGCTGCTGAGCACAGGGTGGCCTGCCGGACTCCTGGGCTTCACTTTTTAAAAAC
CTTAAACAGAAAGCAAAAACCAAAATGTGATCTGGAGGAGATTGGAGGTTGACATGGACAGTGC
CACTCACGCTTTGGTTTTACTGCTTATCTCCTGTGTTGTCTTTTGAACCTGTTTAGTAAACCTG
TTTTGTTTGTTTTGTTTTGTTTTGTTTTTCATTTTATTAGATTTGGTCACTTAAAAATATAAAA
CGTTAATGCCTATCAAA

hide sequence

RefSeq Acc Id:

XM_006239557 ⟹ XP_006239619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,815,609 - 171,830,037 (+)	NCBI
mRatBN7.2	5	166,533,379 - 166,547,811 (+)	NCBI
Rnor_6.0	5	173,372,709 - 173,387,084 (+)	NCBI
Rnor_5.0	5	176,848,287 - 176,862,703 (+)	NCBI

Sequence:

show sequence

AGGCTGCGGCGGGTGCGGTGGGCTTAGTCCCAGCGCGGGTGCGGCTCACGGCGCGGGCCCCACT
CTTCCGCACCCTGCTCCGGCCTTGGCCACAGCGAACTGAACGCGGTAGCGGCCTCAGGGAGAGG
TGAGCGCTCGCGGGCTGCGCGGGGCCTTGGGCCGCTCGTTCGCCCCGCCGGAGCCGGCTGCAGC
GGCGGGCGGGGACTCGGGGACTCCACACGTCGGGTCCCGTTCGTTACGTCGCCGGCTGTGTCCG
GACCCGGAGCGTCCCTTCGCGGACCCGAGATGAGCAGTAACAGCAATAAGAGAGCTCCAACAAC
TGCGACACAAAGGTTGAAACAGGACTACCTTCGAATTAAGAAAGACCCAGTGCCTTACATCTGT
GCGGAGCCCCTCCCTTCAAATATTCTTGAATGGCATTATGTTGTCCGAGGCCCTGAGATGACTC
CTTATGAAGGTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCATTTAAGCCTCC
TAGTATTTACATGATAACCCCCAATGGAAGATTTAAGTGCAACACAAGGCTGTGTCTCTCCATC
ACAGATTTCCATCCAGATACATGGAATCCAGCGTGGTCCGTCTCCACCATTCTAACAGGGCTCC
TGAGCTTTATGGTGGAGAAAGGCCCCACCCTGGGGAGCATAGAGACATCGGACTTCACGAAAAA
ACAGCTGGCAGCACAGAGTCTAGTGTTTAATTTAAAAGATAAAGTCTTCTGTGAATTATTTCCT
GAAGTTGTGGAGGAAATTAAACAGAAACAGAAAGCACAAGATGAACTAAGTAACAGGCCCCAGA
ATCTTCCTTTGCCAGACGTGGTTCCTGATGGGGAGATGCACCGTGGCCAGAATGGGATCCAGCT
CCTCAATGGGCATGCACCTGCTGCTGGCCCAAACCTTGCTGGGCTCCCACAGGCCAACAGGCAT
CATGGACTCCTGGGCGGCGCTTTGGCGAACTTGTTTGTTATAGTTGGGTTTGCGGCCTTTGCCT
ACACGGTCAAATACGTGCTGAGAAGCATAGCACAGGAGTGAGGTTCACAAGCCACAACCTGCAG
TTGCTGCTGAGGGACACAGGGGCCAGAGCTTGATGCAGGCGAGACGGACATGCTGCTGAGCACA
GGGTGGCCTGCCGGACTCCTGGGCTTCACTTTTTAAAAACCTTAAACAGAAAGCAAAAACCAAA
ATGTGATCTGGAGGAGATTGGAGGTTGACATGGACAGTGCCACTCACGCTTTGGTTTTACTGCT
TATCTCCTGTGTTGTCTTTTGAACCTGTTTAGTAAACCTGTTTTGTTTGTTTTGTTTTGTTTTG
TTTTTCATTTTATTAGATTTGGTCACTTAAAAATATAAAACGTTAATGCCTATCAAA

hide sequence

RefSeq Acc Id:

XM_006239558 ⟹ XP_006239620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,815,608 - 171,830,037 (+)	NCBI
mRatBN7.2	5	166,533,379 - 166,547,811 (+)	NCBI
Rnor_6.0	5	173,372,722 - 173,387,084 (+)	NCBI
Rnor_5.0	5	176,848,287 - 176,862,703 (+)	NCBI

Sequence:

show sequence

TGCGGTGGGCTTAGTCCCAGCGCGGGTGCGGCTCACGGCGCGGGCCCCACTCTTCCGCACCCTG
CTCCGGCCTTGGCCACAGCGAACTGAACGCGGTAGCGGCCTCAGGGAGAGATGAGCAGTAACAG
CAATAAGAGAGCTCCAACAACTGCGACACAAAGGTTGAAACAGGACTACCTTCGAATTAAGAAA
GACCCAGTGCCTTACATCTGTGCGGAGCCCCTCCCTTCAAATATTCTTGAATGGCATTATGTTG
TCCGAGGCCCTGAGATGACTCCTTATGAAGGTGGCTATTATCATGGAAAACTAATTTTTCCCAG
AGAATTTCCATTTAAGCCTCCTAGTATTTACATGATAACCCCCAATGGAAGATTTAAGTGCAAC
ACAAGGCTGTGTCTCTCCATCACAGATTTCCATCCAGATACATGGAATCCAGCGTGGTCCGTCT
CCACCATTCTAACAGGGCTCCTGAGCTTTATGGTGGAGAAAGGCCCCACCCTGGGGAGCATAGA
GACATCGGACTTCACGAAAAAACAGCTGGCAGCACAGAGTCTAGTGTTTAATTTAAAAGATAAA
GTCTTCTGTGAATTATTTCCTGAAGTTGTGGAGGAAATTAAACAGAAACAGAAAGCACAAGATG
AACTAAGTAACAGGCCCCAGAATCTTCCTTTGCCAGACGTGGTTCCTGATGGGGAGATGCACCG
TGGCCAGAATGGGATCCAGCTCCTCAATGGGCATGCACCTGCTGCTGGCCCAAACCTTGCTGGG
CTCCCACAGGCCAACAGGCATCATGGACTCCTGGGCGGCGCTTTGGCGAACTTGTTTGTTATAG
TTGGGTTTGCGGCCTTTGCCTACACGGTCAAATACGTGCTGAGAAGCATAGCACAGGAGTGAGG
TTCACAAGCCACAACCTGCAGTTGCTGCTGAGGGACACAGGGGCCAGAGCTTGATGCAGGCGAG
ACGGACATGCTGCTGAGCACAGGGTGGCCTGCCGGACTCCTGGGCTTCACTTTTTAAAAACCTT
AAACAGAAAGCAAAAACCAAAATGTGATCTGGAGGAGATTGGAGGTTGACATGGACAGTGCCAC
TCACGCTTTGGTTTTACTGCTTATCTCCTGTGTTGTCTTTTGAACCTGTTTAGTAAACCTGTTT
TGTTTGTTTTGTTTTGTTTTGTTTTTCATTTTATTAGATTTGGTCACTTAAAAATATAAAACGT
TAATGCCTATCAAA

hide sequence

RefSeq Acc Id:

XM_008764355 ⟹ XP_008762577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,818,891 - 171,830,037 (+)	NCBI
mRatBN7.2	5	166,536,658 - 166,547,811 (+)	NCBI
Rnor_6.0	5	173,372,662 - 173,387,084 (+)	NCBI

Sequence:

show sequence

GTCCCTTGAGCGGCCATCTTGGAAGCTGAGCGACCGTAGCAGCGGAGAGGCTGCGGCGGGTGCG
GTGGGCTTAGTCCCAGCGCGGGTGCGGCTCACGGCGCGGGCCCCACTCTTCCGCACCCTGCTCC
GGCCTTGGCCACAGCGAACTGAACGCGGTAGCGGCCTCAGGGAGAGGTGAGCGCTCGCGGGCTG
CGCGGGGCCTTGGGCCGCTCGTTCGCCCCGCCGGAGCCGGCTGCAGCGGCGGGCGGGGACTCGG
GGACTCCACACGTCGGGTCCCGTTCGTTACGTCGCCGGCTGTGTCCGGACCCGGAGCGTCCCTT
CGCGGACCCGAGGTCGGTTACTGAGTGCGTTTGGGGTACTTGGCTGGGGTTGGTCCGTCGGGCA
GATTAGGGATTTATTTGGTTTGCCACGCGGGCAGATTCTCCCACGAAGAGGCCTGTTGGTTGGT
GCACTTGAAATACTCCGAGGAGGAACCAGTTTTGATCTTTAAAAACGTATCCTGTGAGCTTGTG
TTGTGCGGTGGTGGCCGTTGAGTGCCGCCTTTCACCTTGAACAGTTAGAACCTCAGACTACTTA
ATAAACCCCAAAGGAACGAGTTCAAAGTTATGCCCTTGAGACTAGTATAACAAAACCTTTGGCA
GTAAGAGTGGAACTTGGGCCCGGAACAAGACCCTACCCCTTTCGGGGGTCGGGGTGAGTACGGT
CGATCCTTACTATTCAACCTTTGCTAGCTGCGGACTCTCAGCCAGTGACCTCACTTCCTTTTTA
GTATACATCACTTAAGGTGTATGTTTAACCTAAGTCAAGTCCTCCACATTTTATCAGACCCAGG
TAGACGACTTGGAAGAGATAAGGTCATAGTCCACTGTAAGCTAACAAATGCATAAGAATATACC
TTTTTATAAGTAGTGGTACAAGGCTTTACTCATGCCAGGTGTATGTAATGATAATGTAGCTTTA
GGAAAAAAAAGAAATTTTAGGATTTTATTTAATTAGAAAGGCCTGTGTATGATCTTCAGCGAGA
GGTCTAAGAACTTGGAGTCATTACTCTGCACATCATGCTGTTACTGTACTCAGTTCGAGTCTCA
CGCGTGTGTAAGAAAGTGGTGTTGTGGCTGTTTTTGTGAGCCTCTGGCTTCCTCCAGCCTATGA
AGTAATCCTGGAGAAGGTAAAACTCCCCGAAAACCCTGGCCTTGGTGCATCATGTTCCCTTCTG
ATCAGTCAGGCCACAGTCTTATTTCCCACGGTCACCTAACCTGTGTGTCCAGAAGAAAAAAGAA
CTACCACCTTGGCACCGTGATGAGGGACTGAAAAAAGCCTGCTGCCCTGCTAGTGACTGGCTGC
TTCCTGTCACCTTCCATCTCCTAGGAGAGCCATGAAAGATATTGCTGTTCTGACTGAGGTGCTG
GGCAAGTTGAGCTCTCTGGCCCACATGGCTTCTGAAGCTAAGAACTTGGGGACAATGCTTTCTG
GAAGCATTTCTTGGCCATGCTGGACTGTAACCTTGTTCCTGGTGTGAGCATTCTTGGATGCATC
AGGCAAAAGCCCTTGATTCTGCCAGAAAGATACTGAAGACAGTGAAAGAACATGTGGCTATCTG
CTGGGAATAATTCATACAAAGATGAGCAGTAACAGCAATAAGAGAGCTCCAACAACTGCGACAC
AAAGGTTGAAACAGGACTACCTTCGAATTAAGAAAGACCCAGTGCCTTACATCTGTGCGGAGCC
CCTCCCTTCAAATATTCTTGAATGGCATTATGTTGTCCGAGGCCCTGAGATGACTCCTTATGAA
GGTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCATTTAAGCCTCCTAGTATTT
ACATGATAACCCCCAATGGAAGATTTAAGTGCAACACAAGGCTGTGTCTCTCCATCACAGATTT
CCATCCAGATACATGGAATCCAGCGTGGTCCGTCTCCACCATTCTAACAGGGCTCCTGAGCTTT
ATGGTGGAGAAAGGCCCCACCCTGGGGAGCATAGAGACATCGGACTTCACGAAAAAACAGCTGG
CAGCACAGAGTCTAGTGTTTAATTTAAAAGATAAAGTCTTCTGTGAATTATTTCCTGAAGTTGT
GGAGGAAATTAAACAGAAACAGAAAGCACAAGATGAACTAAGTAACAGGCCCCAGAATCTTCCT
TTGCCAGACGTGGTTCCTGATGGGGAGATGCACCGTGGCCAGAATGGGATCCAGCTCCTCAATG
GGCATGCACCTGCTGCTGGCCCAAACCTTGCTGGGCTCCCACAGGCCAACAGGCATCATGGACT
CCTGGGCGGCGCTTTGGCGAACTTGTTTGTTATAGTTGGGTTTGCGGCCTTTGCCTACACGGTC
AAATACGTGCTGAGAAGCATAGCACAGGAGTGAGGTTCACAAGCCACAACCTGCAGTTGCTGCT
GAGGGACACAGGGGCCAGAGCTTGATGCAGGCGAGACGGACATGCTGCTGAGCACAGGGTGGCC
TGCCGGACTCCTGGGCTTCACTTTTTAAAAACCTTAAACAGAAAGCAAAAACCAAAATGTGATC
TGGAGGAGATTGGAGGTTGACATGGACAGTGCCACTCACGCTTTGGTTTTACTGCTTATCTCCT
GTGTTGTCTTTTGAACCTGTTTAGTAAACCTGTTTTGTTTGTTTTGTTTTGTTTTGTTTTTCAT
TTTATTAGATTTGGTCACTTAAAAATATAAAACGTTAATGCCTATCAAA

hide sequence

RefSeq Acc Id:

XM_063287507 ⟹ XP_063143577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,815,609 - 171,830,037 (+)	NCBI

RefSeq Acc Id:

XM_063287508 ⟹ XP_063143578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,815,607 - 171,828,735 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007656	(Get FASTA)	NCBI Sequence Viewer
	XP_006239616	(Get FASTA)	NCBI Sequence Viewer
	XP_006239617	(Get FASTA)	NCBI Sequence Viewer
	XP_006239619	(Get FASTA)	NCBI Sequence Viewer
	XP_006239620	(Get FASTA)	NCBI Sequence Viewer
	XP_008762577	(Get FASTA)	NCBI Sequence Viewer
	XP_063143577	(Get FASTA)	NCBI Sequence Viewer
	XP_063143578	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79115	(Get FASTA)	NCBI Sequence Viewer
	EDL81345	(Get FASTA)	NCBI Sequence Viewer
	EDL81346	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026752
	ENSRNOP00000026752.7
	ENSRNOP00000074553
	ENSRNOP00000074553.1
	ENSRNOP00000082034.1

RefSeq Acc Id:

NP_001007656 ⟸ NM_001007655

- UniProtKB:

A0A0G2K8C5 (UniProtKB/TrEMBL), A6IUU4 (UniProtKB/TrEMBL), A0A8J8XLZ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHQAKALDSARKMSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPE
MTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT
GLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNR
PQNLPLPDVVPDGEMHRGQNGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAA
FAYTVKYVLRSIAQE

hide sequence

RefSeq Acc Id:	XP_006239616 ⟸ XM_006239554
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K8C5 (UniProtKB/TrEMBL), A6IUU4 (UniProtKB/TrEMBL), A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHQAKALDSARKMSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPE MTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT GLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNR PQNLPLPDVVPDGEMHRGQNGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAA FAYTVKYVLRSIAQE hide sequence

RefSeq Acc Id:	XP_006239617 ⟸ XM_006239555
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K8C5 (UniProtKB/TrEMBL), A6IUU4 (UniProtKB/TrEMBL), A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHQAKALDSARKMSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPE MTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT GLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNR PQNLPLPDVVPDGEMHRGQNGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAA FAYTVKYVLRSIAQE hide sequence

RefSeq Acc Id:	XP_006239619 ⟸ XM_006239557
- Peptide Label:	isoform X2
- UniProtKB:	Q6AYB7 (UniProtKB/TrEMBL), G3V8L8 (UniProtKB/TrEMBL), A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGK LIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT LGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNRPQNLPLPDVVPD GEMHRGQNGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSI AQE hide sequence

RefSeq Acc Id:	XP_006239620 ⟸ XM_006239558
- Peptide Label:	isoform X2
- UniProtKB:	Q6AYB7 (UniProtKB/TrEMBL), G3V8L8 (UniProtKB/TrEMBL), A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGK LIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT LGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNRPQNLPLPDVVPD GEMHRGQNGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSI AQE hide sequence

RefSeq Acc Id:	XP_008762577 ⟸ XM_008764355
- Peptide Label:	isoform X2
- UniProtKB:	Q6AYB7 (UniProtKB/TrEMBL), G3V8L8 (UniProtKB/TrEMBL), A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGK LIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT LGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNRPQNLPLPDVVPD GEMHRGQNGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSI AQE hide sequence

RefSeq Acc Id:

ENSRNOP00000026752 ⟸ ENSRNOT00000026752

RefSeq Acc Id:

ENSRNOP00000074553 ⟸ ENSRNOT00000077602

RefSeq Acc Id:

ENSRNOP00000082034 ⟸ ENSRNOT00000094080

RefSeq Acc Id:	XP_063143578 ⟸ XM_063287508
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063143577 ⟸ XM_063287507
- Peptide Label:	isoform X1

Protein Domains

UBC core

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K8C5-F1-model_v2	AlphaFold	A0A0G2K8C5	1-271	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694338

Promoter ID:

EPDNEW_R4863

Type:

initiation region

Name:

Ube2j2_1

Description:

ubiquitin-conjugating enzyme E2, J2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	173,372,683 - 173,372,743	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359523	AgrOrtholog
BioCyc Gene	G2FUF-38884	BioCyc
BioCyc Pathway	PWY-7511 [protein ubiquitination]	BioCyc
BioCyc Pathway Image	PWY-7511	BioCyc
Ensembl Genes	ENSRNOG00000019749	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026752.8	UniProtKB/TrEMBL
	ENSRNOT00000077602.2	UniProtKB/TrEMBL
	ENSRNOT00000094080.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.110.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7126201	IMAGE-MGC_LOAD
InterPro	UBQ-conjugat_E2	UniProtKB/TrEMBL
	UBQ-conjugating_enzyme/RWD	UniProtKB/TrEMBL
KEGG Report	rno:298689	UniProtKB/TrEMBL
MGC_CLONE	MGC:94113	IMAGE-MGC_LOAD
NCBI Gene	298689	ENTREZGENE
PANTHER	UBC CORE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	UBIQUITIN-CONJUGATING ENZYME E2	UniProtKB/TrEMBL
Pfam	UQ_con	UniProtKB/TrEMBL
PhenoGen	Ube2j2	PhenoGen
PROSITE	UBIQUITIN_CONJUGAT_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019749	RatGTEx
SMART	UBCc	UniProtKB/TrEMBL
Superfamily-SCOP	UBQ-conjugat/RWD-like	UniProtKB/TrEMBL
UniProt	A0A0G2K8C5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G6W9_RAT	UniProtKB/TrEMBL
	A0A8J8XLZ8	ENTREZGENE, UniProtKB/TrEMBL
	A6IUU4	ENTREZGENE, UniProtKB/TrEMBL
	G3V8L8	ENTREZGENE
	Q6AYB7	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	G3V8L8	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-01	Ube2j2	ubiquitin-conjugating enzyme E2, J2	Ube2j2	ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-25	Ube2j2	ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast)	Ube2j2	ubiquitin-conjugating enzyme E2, J2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-12-15	Ube2j2	ubiquitin-conjugating enzyme E2, J2	Ube2j2	ubiquitin-conjugating enzyme E2, J2 homolog (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Ube2j2	ubiquitin-conjugating enzyme E2, J2 homolog (yeast)	MGC94113	similar to Ubc6p homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	MGC94113	similar to Ubc6p homolog			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

BioCyc Pathways