Dmac2l (distal membrane arm assembly component 2 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Dmac2l (distal membrane arm assembly component 2 like) Rattus norvegicus
Analyze
Symbol: Dmac2l
Name: distal membrane arm assembly component 2 like
RGD ID: 1359208
Description: Predicted to enable metal ion binding activity. Predicted to be involved in ATP biosynthetic process and proton transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex, coupling factor F(o). Predicted to be active in cytoplasm. Orthologous to human DMAC2L (distal membrane arm assembly component 2 like); INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP synthase subunit s, mitochondrial; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B); ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B); ATP synthase-coupling factor B; Atp5s; distal membrane arm assembly complex 2 like; Factor B; MGC94488; mitochondrial ATP synthase regulatory component factor B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,941,605 - 93,959,932 (+)NCBIGRCr8
mRatBN7.2688,205,580 - 88,223,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl688,205,700 - 88,223,933 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,604,398 - 88,622,632 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,903,850 - 88,922,084 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0688,343,589 - 88,361,823 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0692,057,782 - 92,076,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,057,807 - 92,076,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06101,507,306 - 101,525,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,771,989 - 91,799,619 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,775,444 - 91,803,074 (+)NCBI
Celera686,700,675 - 86,718,905 (+)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
aristolochic acid A  (ISO)
benzbromarone  (EXP)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
clofibrate  (EXP)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
entinostat  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
fluoranthene  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
indole-3-methanol  (EXP)
irinotecan  (ISO)
isoprenaline  (EXP)
L-ethionine  (EXP)
lipopolysaccharide  (ISO)
methylmercury chloride  (ISO)
niclosamide  (ISO)
omeprazole  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Evidence for the involvement of coupling factor B in the H+ channel of the mitochondrial H+-ATPase. Sanadi DR, etal., Proc Natl Acad Sci U S A 1984 Mar;81(5):1371-4.
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14651853   PMID:15489334   PMID:18614015  


Genomics

Comparative Map Data
Dmac2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,941,605 - 93,959,932 (+)NCBIGRCr8
mRatBN7.2688,205,580 - 88,223,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl688,205,700 - 88,223,933 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,604,398 - 88,622,632 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,903,850 - 88,922,084 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0688,343,589 - 88,361,823 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0692,057,782 - 92,076,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,057,807 - 92,076,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06101,507,306 - 101,525,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,771,989 - 91,799,619 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,775,444 - 91,803,074 (+)NCBI
Celera686,700,675 - 86,718,905 (+)NCBICelera
Cytogenetic Map6q24NCBI
DMAC2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381450,311,516 - 50,327,957 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1450,312,324 - 50,335,558 (+)EnsemblGRCh38hg38GRCh38
GRCh371450,778,234 - 50,794,675 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,848,797 - 49,862,418 (+)NCBINCBI36Build 36hg18NCBI36
Build 341449,848,796 - 49,859,493NCBI
Celera1430,646,177 - 30,660,090 (+)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,904,512 - 30,918,211 (+)NCBIHuRef
CHM1_11450,717,681 - 50,731,593 (+)NCBICHM1_1
T2T-CHM13v2.01444,517,742 - 44,534,175 (+)NCBIT2T-CHM13v2.0
Dmac2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,771,687 - 69,791,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,771,724 - 69,791,434 (+)EnsemblGRCm39 Ensembl
GRCm381269,724,913 - 69,744,665 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,724,950 - 69,744,660 (+)EnsemblGRCm38mm10GRCm38
MGSCv371270,825,949 - 70,845,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,643,567 - 70,663,263 (+)NCBIMGSCv36mm8
Celera1270,815,362 - 70,840,572 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.94NCBI
Dmac2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540912,474,063 - 12,484,984 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540912,473,891 - 12,485,066 (-)NCBIChiLan1.0ChiLan1.0
DMAC2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21551,451,472 - 51,469,328 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11450,665,180 - 50,685,831 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,901,989 - 30,917,742 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11449,205,309 - 49,220,464 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1449,206,098 - 49,229,325 (+)Ensemblpanpan1.1panPan2
DMAC2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,760,350 - 26,770,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,760,530 - 26,770,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha826,513,977 - 26,524,400 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,938,103 - 26,948,522 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,938,131 - 26,949,378 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,593,051 - 26,603,459 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,665,493 - 26,675,892 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,984,329 - 26,994,738 (+)NCBIUU_Cfam_GSD_1.0
Dmac2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,953,034 - 58,964,676 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649515,228,075 - 15,239,021 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649515,227,023 - 15,238,638 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMAC2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1180,068,973 - 180,081,412 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11180,069,157 - 180,081,332 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21200,410,348 - 200,422,029 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DMAC2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12427,383,317 - 27,398,331 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2427,383,477 - 27,397,323 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605315,706,020 - 15,730,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dmac2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473118,539,851 - 18,553,864 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473118,544,168 - 18,554,473 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dmac2l
78 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:581
Count of miRNA genes:267
Interacting mature miRNAs:333
Transcripts:ENSRNOT00000006509
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat

Markers in Region
RH133675  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2688,223,501 - 88,223,697 (+)MAPPERmRatBN7.2
Rnor_6.0692,075,590 - 92,075,785NCBIRnor6.0
Rnor_5.06101,525,110 - 101,525,305UniSTSRnor5.0
RGSC_v3.4691,799,187 - 91,799,382UniSTSRGSC3.4
Celera686,718,473 - 86,718,668UniSTS
RH 3.4 Map6627.8UniSTS
Cytogenetic Map6q24UniSTS
AI556394  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2688,219,862 - 88,220,561 (+)MAPPERmRatBN7.2
Rnor_6.0692,071,945 - 92,072,643NCBIRnor6.0
Rnor_5.06101,521,474 - 101,522,172UniSTSRnor5.0
RGSC_v3.4691,786,152 - 91,786,850UniSTSRGSC3.4
Celera686,714,838 - 86,715,536UniSTS
RH 3.4 Map6630.5UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 18 13 24 11
Low 3 25 57 41 19 41 8 11 61 11 30 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006509   ⟹   ENSRNOP00000006509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl688,205,700 - 88,223,933 (+)Ensembl
Rnor_6.0 Ensembl692,057,807 - 92,076,021 (+)Ensembl
RefSeq Acc Id: NM_001007749   ⟹   NP_001007750
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,941,698 - 93,959,932 (+)NCBI
mRatBN7.2688,205,700 - 88,223,934 (+)NCBI
Rnor_6.0692,057,807 - 92,076,022 (+)NCBI
Rnor_5.06101,507,306 - 101,525,542 (+)NCBI
RGSC_v3.4691,771,989 - 91,799,619 (+)RGD
Celera686,700,675 - 86,718,905 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240174   ⟹   XP_006240236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,941,669 - 93,959,932 (+)NCBI
mRatBN7.2688,205,580 - 88,223,934 (+)NCBI
Rnor_6.0692,057,791 - 92,076,022 (+)NCBI
Rnor_5.06101,507,306 - 101,525,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240175   ⟹   XP_006240237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,941,658 - 93,959,932 (+)NCBI
mRatBN7.2688,206,017 - 88,223,934 (+)NCBI
Rnor_6.0692,058,256 - 92,076,022 (+)NCBI
Rnor_5.06101,507,306 - 101,525,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240176   ⟹   XP_006240238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,941,605 - 93,959,932 (+)NCBI
mRatBN7.2688,205,580 - 88,223,934 (+)NCBI
Rnor_6.0692,057,782 - 92,076,022 (+)NCBI
Rnor_5.06101,507,306 - 101,525,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112504   ⟹   XP_038968432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,941,677 - 93,959,932 (+)NCBI
mRatBN7.2688,205,580 - 88,223,934 (+)NCBI
RefSeq Acc Id: XM_039112505   ⟹   XP_038968433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,941,677 - 93,959,932 (+)NCBI
mRatBN7.2688,205,580 - 88,223,934 (+)NCBI
RefSeq Acc Id: XM_063262116   ⟹   XP_063118186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,941,667 - 93,956,593 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001007750   ⟸   NM_001007749
- Peptide Label: precursor
- UniProtKB: Q5XIM4 (UniProtKB/Swiss-Prot),   A6HBX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240238   ⟸   XM_006240176
- Peptide Label: isoform X1
- UniProtKB: Q5XIM4 (UniProtKB/Swiss-Prot),   A6HBX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240236   ⟸   XM_006240174
- Peptide Label: isoform X1
- UniProtKB: Q5XIM4 (UniProtKB/Swiss-Prot),   A6HBX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240237   ⟸   XM_006240175
- Peptide Label: isoform X1
- UniProtKB: Q5XIM4 (UniProtKB/Swiss-Prot),   A6HBX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006509   ⟸   ENSRNOT00000006509
RefSeq Acc Id: XP_038968432   ⟸   XM_039112504
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968433   ⟸   XM_039112505
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118186   ⟸   XM_063262116
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIM4-F1-model_v2 AlphaFold Q5XIM4 1-200 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694639
Promoter ID:EPDNEW_R5162
Type:multiple initiation site
Name:Atp5s_1
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunits
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0692,057,798 - 92,057,858EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359208 AgrOrtholog
BioCyc Gene G2FUF-37226 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000004893 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055008905 UniProtKB/Swiss-Prot
  ENSRNOG00060006051 UniProtKB/Swiss-Prot
  ENSRNOG00065006772 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006509 ENTREZGENE
  ENSRNOT00000006509.6 UniProtKB/Swiss-Prot
  ENSRNOT00055015031 UniProtKB/Swiss-Prot
  ENSRNOT00060009998 UniProtKB/Swiss-Prot
  ENSRNOT00065010526 UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135201 IMAGE-MGC_LOAD
InterPro LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362749 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94488 IMAGE-MGC_LOAD
NCBI Gene 362749 ENTREZGENE
PhenoGen Dmac2l PhenoGen
RatGTEx ENSRNOG00000004893 RatGTEx
  ENSRNOG00055008905 RatGTEx
  ENSRNOG00060006051 RatGTEx
  ENSRNOG00065006772 RatGTEx
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6HBX3 ENTREZGENE, UniProtKB/TrEMBL
  ATP5S_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-18 Dmac2l  distal membrane arm assembly component 2 like  Dmac2l  distal membrane arm assembly complex 2 like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-09-06 Dmac2l  distal membrane arm assembly complex 2 like  Atp5s  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-12-01 Atp5s  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)  Atp5s  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Atp5s  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)  Atp5s  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Atp5s  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s  Atp5s  mitochondrial ATP synthase regulatory component factor B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 Atp5s  mitochondrial ATP synthase regulatory component factor B      Symbol and Name status set to provisional 70820 PROVISIONAL