Vom1r30 (vomeronasal 1 receptor 30) - Rat Genome Database

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Gene: Vom1r30 (vomeronasal 1 receptor 30) Rattus norvegicus
Analyze
Symbol: Vom1r30
Name: vomeronasal 1 receptor 30
RGD ID: 1359155
Description: Orthologous to human VN1R3 (vomeronasal 1 receptor 3); INTERACTS WITH Cuprizon; furan; (+)-catechin (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: V1rl1; vomernasal 1 receptor Vom1r30; vomeronasal 1 receptor, 30; vomeronasal 1 receptor, L1; vomeronasal type-1 receptor 4; vomeronasal V1r-type receptor V1rl1
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8173,880,464 - 73,881,722 (+)NCBIGRCr8
mRatBN7.2164,965,528 - 64,966,786 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0163,333,283 - 63,334,176 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,333,283 - 63,334,176 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,651,853 - 69,652,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,286,233 - 63,287,126 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,294,304 - 63,295,198 (+)NCBI
Celera162,721,061 - 62,721,954 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19952141  


Genomics

Comparative Map Data
Vom1r30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8173,880,464 - 73,881,722 (+)NCBIGRCr8
mRatBN7.2164,965,528 - 64,966,786 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0163,333,283 - 63,334,176 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,333,283 - 63,334,176 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,651,853 - 69,652,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,286,233 - 63,287,126 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,294,304 - 63,295,198 (+)NCBI
Celera162,721,061 - 62,721,954 (+)NCBICelera
Cytogenetic Map1q12NCBI
VN1R3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,807,585 - 31,808,853 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,807,926 - 31,808,844 (-)EnsemblGRCh38hg38GRCh38
GRCh371631,818,906 - 31,820,174 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,726,407 - 31,727,675 (-)NCBINCBI36Build 36hg18NCBI36
Build 341631,726,406 - 31,727,675NCBI
Celera1628,488,651 - 28,489,907 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1629,379,291 - 29,380,547 (-)NCBIHuRef
CHM1_11633,137,535 - 33,138,791 (-)NCBICHM1_1
T2T-CHM13v2.01632,194,951 - 32,196,219 (-)NCBIT2T-CHM13v2.0
Vmn1r70
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39710,367,514 - 10,368,410 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl710,365,459 - 10,370,457 (+)EnsemblGRCm39 Ensembl
GRCm38710,633,587 - 10,634,483 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl710,631,532 - 10,636,530 (+)EnsemblGRCm38mm10GRCm38
MGSCv37711,218,936 - 11,219,832 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3679,508,480 - 9,509,376 (+)NCBIMGSCv36mm8
Celera77,382,705 - 7,383,601 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map76.55NCBI

Variants

.
Variants in Vom1r30
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:90
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000032784
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium
Low 2
Below cutoff 1 1 1 2 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000086294   ⟹   ENSRNOP00000071686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl163,333,283 - 63,334,176 (+)Ensembl
RefSeq Acc Id: NM_001009511   ⟹   NP_001009511
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8173,880,464 - 73,881,722 (+)NCBI
mRatBN7.2164,965,528 - 64,966,786 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001009511 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL84915 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000071686   ⟸   ENSRNOT00000086294
RefSeq Acc Id: NP_001009511   ⟸   NM_001009511
- UniProtKB: A6KS08 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5J3I9-F1-model_v2 AlphaFold Q5J3I9 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359155 AgrOrtholog
BioCyc Gene G2FUF-61060 BioCyc
Ensembl Genes ENSRNOG00000057219 Ensembl
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
NCBI Gene 494230 ENTREZGENE
PANTHER VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR 4 UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vom1r30 PhenoGen
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000057219 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6KS08 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-06-08 Vom1r30  vomeronasal 1 receptor, 30  V1rl1  vomeronasal 1 receptor, L1  Symbol and Name updated 2325755 APPROVED
2008-03-07 V1rl1  vomeronasal 1 receptor, L1  V1rl1  vomeronasal V1r-type receptor V1rl1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 V1rl1  vomeronasal V1r-type receptor V1rl1      Symbol and Name status set to provisional 70820 PROVISIONAL