Eef1b2 (eukaryotic translation elongation factor 1 beta 2) - Rat Genome Database

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Gene: Eef1b2 (eukaryotic translation elongation factor 1 beta 2) Rattus norvegicus
Analyze
Symbol: Eef1b2
Name: eukaryotic translation elongation factor 1 beta 2
RGD ID: 1311415
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Involved in response to ethanol. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation elongation factor 1 complex. Predicted to be active in cytosol. Predicted to colocalize with endoplasmic reticulum. Orthologous to human EEF1B2 (eukaryotic translation elongation factor 1 beta 2); PARTICIPATES IN translation elongation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: elongation factor 1-beta; LOC363241
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,074,091 - 72,076,591 (+)NCBIGRCr8
mRatBN7.2964,580,163 - 64,582,737 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,579,893 - 64,582,737 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx973,083,686 - 73,086,186 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0978,204,606 - 78,207,106 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0976,511,237 - 76,513,737 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0969,953,440 - 69,956,158 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,953,440 - 69,956,160 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,762,337 - 69,765,055 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,832,222 - 61,834,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1961,979,375 - 61,981,932 (+)NCBI
Celera961,998,041 - 62,000,759 (+)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acetamide  (EXP)
acrolein  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen sulfide  (ISO)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
lead(II) chloride  (ISO)
methidathion  (ISO)
miconazole  (ISO)
Monobutylphthalate  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nitric oxide  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
picoxystrobin  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
pyrimidifen  (ISO)
pyrogallol  (ISO)
quercetin  (ISO)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The elongation, termination, and recycling phases of translation in eukaryotes. Dever TE and Green R, Cold Spring Harb Perspect Biol. 2012 Jul 1;4(7):a013706. doi: 10.1101/cshperspect.a013706.
2. Prenatal alcohol exposure alters phosphorylation and glycosylation of proteins in rat offspring liver. Fofana B, etal., Proteomics. 2010 Feb;10(3):417-34. doi: 10.1002/pmic.200800969.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8743958   PMID:12426392   PMID:12477932   PMID:24625528   PMID:25002582   PMID:35352799  


Genomics

Comparative Map Data
Eef1b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,074,091 - 72,076,591 (+)NCBIGRCr8
mRatBN7.2964,580,163 - 64,582,737 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,579,893 - 64,582,737 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx973,083,686 - 73,086,186 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0978,204,606 - 78,207,106 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0976,511,237 - 76,513,737 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0969,953,440 - 69,956,158 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,953,440 - 69,956,160 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,762,337 - 69,765,055 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,832,222 - 61,834,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1961,979,375 - 61,981,932 (+)NCBI
Celera961,998,041 - 62,000,759 (+)NCBICelera
Cytogenetic Map9q32NCBI
EEF1B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382206,159,609 - 206,162,928 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2206,159,585 - 206,162,928 (+)EnsemblGRCh38hg38GRCh38
GRCh372207,024,333 - 207,027,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,732,563 - 206,735,898 (+)NCBINCBI36Build 36hg18NCBI36
Build 342206,849,839 - 206,853,157NCBI
Celera2200,781,747 - 200,785,083 (+)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2198,872,898 - 198,876,236 (+)NCBIHuRef
CHM1_12207,030,874 - 207,034,213 (+)NCBICHM1_1
T2T-CHM13v2.02206,641,502 - 206,644,822 (+)NCBIT2T-CHM13v2.0
Eef1b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,215,990 - 63,219,645 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,215,984 - 63,219,645 (+)EnsemblGRCm39 Ensembl
GRCm38163,176,831 - 63,180,486 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,176,825 - 63,180,486 (+)EnsemblGRCm38mm10GRCm38
MGSCv37163,223,405 - 63,227,060 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,099,699 - 63,113,932 (+)NCBIMGSCv36mm8
Celera163,687,221 - 63,690,876 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.31NCBI
Eef1b2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554578,835,121 - 8,837,816 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554578,835,121 - 8,837,816 (-)NCBIChiLan1.0ChiLan1.0
EEF1B2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213108,773,675 - 108,776,640 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B108,788,618 - 108,791,622 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B93,399,413 - 93,402,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B211,528,491 - 211,531,826 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B211,528,497 - 211,531,826 (+)Ensemblpanpan1.1panPan2
EEF1B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,713,927 - 14,716,894 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,714,017 - 14,716,850 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,590,671 - 15,593,638 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03714,649,290 - 14,652,257 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3714,649,380 - 14,652,213 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13714,603,540 - 14,606,497 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03714,575,797 - 14,578,764 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03714,572,093 - 14,575,060 (+)NCBIUU_Cfam_GSD_1.0
Eef1b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,904,145 - 162,907,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366312,539,070 - 2,542,419 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366312,539,075 - 2,542,252 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EEF1B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15109,451,514 - 109,455,525 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115109,451,901 - 109,455,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215121,000,537 - 121,004,164 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EEF1B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11091,927,639 - 91,930,972 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040107,448,123 - 107,451,477 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eef1b2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247659,958,907 - 9,962,108 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247659,958,908 - 9,962,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eef1b2
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:67
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000034740
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96138143465691299Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 2 2
Medium 3 43 55 39 19 39 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000034740   ⟹   ENSRNOP00000036882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl964,580,009 - 64,582,733 (+)Ensembl
Rnor_6.0 Ensembl969,953,440 - 69,956,160 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113520   ⟹   ENSRNOP00000091436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl964,579,893 - 64,582,737 (+)Ensembl
RefSeq Acc Id: NM_001108799   ⟹   NP_001102269
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8972,074,091 - 72,076,591 (+)NCBI
mRatBN7.2964,580,237 - 64,582,737 (+)NCBI
Rnor_6.0969,953,440 - 69,956,158 (+)NCBI
Rnor_5.0969,762,337 - 69,765,055 (+)NCBI
RGSC_v3.4961,832,222 - 61,834,940 (+)RGD
Celera961,998,041 - 62,000,759 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102269 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68738 (Get FASTA)   NCBI Sequence Viewer  
  EDL98899 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000036882
  ENSRNOP00000036882.4
  ENSRNOP00000091436.1
Reference Protein Sequences
RefSeq Acc Id: NP_001102269   ⟸   NM_001108799
- UniProtKB: B5DEN5 (UniProtKB/TrEMBL),   A6IPG1 (UniProtKB/TrEMBL),   A0A8I6AEG7 (UniProtKB/TrEMBL),   F6SZC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000036882   ⟸   ENSRNOT00000034740
RefSeq Acc Id: ENSRNOP00000091436   ⟸   ENSRNOT00000113520
Protein Domains
Elongation factor 1 beta central acidic region   Translation elongation factor EF1B beta/delta

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEN5-F1-model_v2 AlphaFold B5DEN5 1-225 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696711
Promoter ID:EPDNEW_R7236
Type:multiple initiation site
Name:Eef1b2_1
Description:eukaryotic translation elongation factor 1 beta 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0969,953,671 - 69,953,731EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311415 AgrOrtholog
BioCyc Gene G2FUF-27352 BioCyc
Ensembl Genes ENSRNOG00000024186 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034740 ENTREZGENE
  ENSRNOT00000034740.5 UniProtKB/TrEMBL
  ENSRNOT00000113520.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.130 UniProtKB/TrEMBL
  3.30.70.60 UniProtKB/TrEMBL
InterPro eEF-1beta-like_sf UniProtKB/TrEMBL
  EF-1_beta_acid_region_euk UniProtKB/TrEMBL
  EF1B_bsu/dsu UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/TrEMBL
  Transl_elong_EF1B/ribosomal_S6 UniProtKB/TrEMBL
  Transl_elong_EF1B_B/D_CS UniProtKB/TrEMBL
  Transl_elong_fac_EF1B_bsu/dsu UniProtKB/TrEMBL
KEGG Report rno:363241 UniProtKB/TrEMBL
NCBI Gene 363241 ENTREZGENE
PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/TrEMBL
  ELONGATION FACTOR 1-BETA UniProtKB/TrEMBL
Pfam EF-1_beta_acid UniProtKB/TrEMBL
  EF1_GNE UniProtKB/TrEMBL
PhenoGen Eef1b2 PhenoGen
PROSITE EF1BD_1 UniProtKB/TrEMBL
  EF1BD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024186 RatGTEx
SMART EF-1_beta_acid UniProtKB/TrEMBL
  EF1_GNE UniProtKB/TrEMBL
Superfamily-SCOP GST_C_like UniProtKB/TrEMBL
  Transl_elong_EF1B_B/D_G_exch UniProtKB/TrEMBL
UniProt A0A8I6AEG7 ENTREZGENE, UniProtKB/TrEMBL
  A6IPG1 ENTREZGENE, UniProtKB/TrEMBL
  B5DEN5 ENTREZGENE
  F6SZC1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B5DEN5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Eef1b2  eukaryotic translation elongation factor 1 beta 2   Eef1b2_predicted  eukaryotic translation elongation factor 1 beta 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Eef1b2_predicted  eukaryotic translation elongation factor 1 beta 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED