Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | lissencephaly 6 | | ISO | KATNB1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | lissencephaly 6 | | ISO | KATNB1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
5. | LAPSER1 is a putative cytokinetic tumor suppressor that shows the same centrosome and midbody subcellular localization pattern as p80 katanin. | Sudo H and Maru Y, FASEB J. 2007 Jul;21(9):2086-100. Epub 2007 Mar 9. |
6. | Regulation of microtubule severing by katanin subunits during neuronal development. | Yu W, etal., J Neurosci. 2005 Jun 8;25(23):5573-83. |
PMID:9568719 | PMID:10751153 | PMID:12477932 | PMID:16203747 | PMID:19946888 | PMID:21630459 | PMID:23904609 | PMID:26929214 |
Katnb1 (Rattus norvegicus - Norway rat) |
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KATNB1 (Homo sapiens - human) |
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Katnb1 (Mus musculus - house mouse) |
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Katnb1 (Chinchilla lanigera - long-tailed chinchilla) |
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KATNB1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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KATNB1 (Canis lupus familiaris - dog) |
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Katnb1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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KATNB1 (Sus scrofa - pig) |
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KATNB1 (Chlorocebus sabaeus - green monkey) |
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Katnb1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Katnb1
41 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH140643 |
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AI710639 |
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KATNB1 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 26 | 18 | 12 | 14 | 12 | 74 | 22 | 41 | 11 | |||
Low | 17 | 39 | 29 | 5 | 29 | 8 | 11 | 13 | 8 | ||||
Below cutoff |
RefSeq Transcripts | NM_001024746 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_017601198 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017601200 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017601201 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063277852 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063277853 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063277854 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063277855 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063277856 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC106681 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AY953248 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC161823 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000019 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000019770 ⟹ ENSRNOP00000019770 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000087100 ⟹ ENSRNOP00000070102 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001024746 ⟹ NP_001019917 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017601198 ⟹ XP_017456687 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017601200 ⟹ XP_017456689 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017601201 ⟹ XP_017456690 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063277852 ⟹ XP_063133922 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063277853 ⟹ XP_063133923 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063277854 ⟹ XP_063133924 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063277855 ⟹ XP_063133925 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063277856 ⟹ XP_063133926 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001019917 | (Get FASTA) | NCBI Sequence Viewer |
XP_017456687 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017456689 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017456690 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063133922 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063133923 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063133924 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063133925 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063133926 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI61823 | (Get FASTA) | NCBI Sequence Viewer |
AAY34149 | (Get FASTA) | NCBI Sequence Viewer | |
EDL87306 | (Get FASTA) | NCBI Sequence Viewer | |
EDL87307 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000019770 | ||
ENSRNOP00000019770.6 | |||
ENSRNOP00000070102 | |||
ENSRNOP00000070102.2 |
RefSeq Acc Id: | NP_001019917 ⟸ NM_001024746 |
- UniProtKB: | Q4VFZ4 (UniProtKB/TrEMBL), B1WBN6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017456690 ⟸ XM_017601201 |
- Peptide Label: | isoform X2 |
- UniProtKB: | B1WBN6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017456687 ⟸ XM_017601198 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2JX20 (UniProtKB/TrEMBL), B1WBN6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017456689 ⟸ XM_017601200 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2JX20 (UniProtKB/TrEMBL), B1WBN6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000070102 ⟸ ENSRNOT00000087100 |
RefSeq Acc Id: | ENSRNOP00000019770 ⟸ ENSRNOT00000019770 |
RefSeq Acc Id: | XP_063133925 ⟸ XM_063277855 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063133924 ⟸ XM_063277854 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_063133922 ⟸ XM_063277852 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063133926 ⟸ XM_063277856 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063133923 ⟸ XM_063277853 |
- Peptide Label: | isoform X3 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q4VFZ4-F1-model_v2 | AlphaFold | Q4VFZ4 | 1-655 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13700955 | ||||||||
Promoter ID: | EPDNEW_R11457 | ||||||||
Type: | initiation region | ||||||||
Name: | Katnb1_1 | ||||||||
Description: | katanin regulatory subunit B1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1311256 | AgrOrtholog |
BioCyc Gene | G2FUF-6524 | BioCyc |
Ensembl Genes | ENSRNOG00000014626 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000019770 | ENTREZGENE |
ENSRNOT00000019770.7 | UniProtKB/TrEMBL | |
ENSRNOT00000087100.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.130.10.10 | UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:9102535 | IMAGE-MGC_LOAD |
InterPro | G-protein_beta_WD-40_rep_reg | UniProtKB/TrEMBL |
Katanin_bsu1 | UniProtKB/TrEMBL | |
Katanin_C-terminal | UniProtKB/TrEMBL | |
WD40/YVTN_repeat-like_dom | UniProtKB/TrEMBL | |
WD40_repeat | UniProtKB/TrEMBL | |
WD40_repeat_CS | UniProtKB/TrEMBL | |
WD40_repeat_dom_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:291852 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:187277 | IMAGE-MGC_LOAD |
NCBI Gene | 291852 | ENTREZGENE |
PANTHER | KATANIN P80 SUBUNIT | UniProtKB/TrEMBL |
KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1 | UniProtKB/TrEMBL | |
Pfam | Katanin_con80 | UniProtKB/TrEMBL |
WD40 | UniProtKB/TrEMBL | |
PharmGKB | KATNB1 | RGD |
PhenoGen | Katnb1 | PhenoGen |
PRINTS | GPROTEINBRPT | UniProtKB/TrEMBL |
PROSITE | WD_REPEATS_1 | UniProtKB/TrEMBL |
WD_REPEATS_2 | UniProtKB/TrEMBL | |
WD_REPEATS_REGION | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000014626 | RatGTEx |
SMART | WD40 | UniProtKB/TrEMBL |
Superfamily-SCOP | WD40_like | UniProtKB/TrEMBL |
UniProt | A0A0G2JX20 | ENTREZGENE, UniProtKB/TrEMBL |
A6JY28_RAT | UniProtKB/TrEMBL | |
B1WBN6 | ENTREZGENE, UniProtKB/TrEMBL | |
F7FLI5_RAT | UniProtKB/TrEMBL | |
Q4VFZ4 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-03-29 | Katnb1 | katanin regulatory subunit B1 | Katnb1 | katanin p80 (WD repeat containing) subunit B 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-11-17 | Katnb1 | katanin p80 (WD repeat containing) subunit B 1 | Katnb1 | katanin p80 (WD40-containing) subunit B 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Katnb1 | katanin p80 (WD40-containing) subunit B 1 | Katnb1_predicted | katanin p80 (WD40-containing) subunit B 1 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Katnb1_predicted | katanin p80 (WD40-containing) subunit B 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |