Atp6v1c1 (ATPase H+ transporting V1 subunit C1) - Rat Genome Database

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Gene: Atp6v1c1 (ATPase H+ transporting V1 subunit C1) Rattus norvegicus
Analyze
Symbol: Atp6v1c1
Name: ATPase H+ transporting V1 subunit C1
RGD ID: 1311082
Description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in synaptic vesicle lumen acidification. Located in apical part of cell. Is extrinsic component of synaptic vesicle membrane. Orthologous to human ATP6V1C1 (ATPase H+ transporting V1 subunit C1); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH amphetamine; bisphenol A; Brodifacoum.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATPase, H+ transporting, lysosomal V1 subunit C1; ATPase, H+ transporting, V1 subunit C; ATPase, H+ transporting, V1 subunit C, isoform 1; LOC299971; MGC109315; V-ATPase subunit C 1; V-type proton ATPase subunit C 1; vacuolar proton pump subunit C 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8771,719,326 - 71,757,191 (+)NCBIGRCr8
mRatBN7.2769,834,464 - 69,872,278 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl769,834,463 - 69,872,278 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx771,706,991 - 71,744,745 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0773,909,580 - 73,947,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0773,777,596 - 73,815,355 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0777,678,853 - 77,716,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl777,678,968 - 77,716,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0778,536,306 - 78,574,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,341,301 - 74,378,806 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1774,362,030 - 74,399,537 (+)NCBI
Celera766,891,594 - 66,929,033 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structure of V-ATPase from the mammalian brain. Abbas YM, etal., Science. 2020 Mar 13;367(6483):1240-1246. doi: 10.1126/science.aaz2924.
2. A 4-gene panel as a marker at chromosome 8q in Asian gastric cancer patients. Cheng L, etal., Genomics. 2013 Oct;102(4):323-30. doi: 10.1016/j.ygeno.2013.05.004. Epub 2013 May 28.
3. Silencing of atp6v1c1 prevents breast cancer growth and bone metastasis. Feng S, etal., Int J Biol Sci. 2013 Sep 5;9(8):853-62. doi: 10.7150/ijbs.6030. eCollection 2013.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Expression of ATP6V1C1 during oral carcinogenesis. Oliveira Alves MG, etal., Biotech Histochem. 2016;91(4):263-8. doi: 10.3109/10520295.2016.1144078. Epub 2016 Mar 16.
9. Functional expression of V-ATPases in the plasma membrane of glial cells. Philippe JM, etal., Glia. 2002 Mar 15;37(4):365-73.
10. Distinct expression patterns of different subunit isoforms of the V-ATPase in the rat epididymis. Pietrement C, etal., Biol Reprod. 2006 Jan;74(1):185-94. Epub 2005 Sep 28.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. GOA pipeline RGD automated data pipeline
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:12527205   PMID:16177003   PMID:17897319   PMID:19056867   PMID:21700703   PMID:23376485  


Genomics

Comparative Map Data
Atp6v1c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8771,719,326 - 71,757,191 (+)NCBIGRCr8
mRatBN7.2769,834,464 - 69,872,278 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl769,834,463 - 69,872,278 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx771,706,991 - 71,744,745 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0773,909,580 - 73,947,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0773,777,596 - 73,815,355 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0777,678,853 - 77,716,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl777,678,968 - 77,716,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0778,536,306 - 78,574,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,341,301 - 74,378,806 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1774,362,030 - 74,399,537 (+)NCBI
Celera766,891,594 - 66,929,033 (+)NCBICelera
Cytogenetic Map7q22NCBI
ATP6V1C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388103,021,083 - 103,073,051 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8103,021,063 - 103,073,051 (+)EnsemblGRCh38hg38GRCh38
GRCh378104,033,311 - 104,085,279 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368104,102,424 - 104,154,461 (+)NCBINCBI36Build 36hg18NCBI36
Build 348104,102,444 - 104,154,460NCBI
Celera8100,220,060 - 100,272,082 (+)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef899,233,896 - 99,286,052 (+)NCBIHuRef
CHM1_18104,074,301 - 104,126,315 (+)NCBICHM1_1
T2T-CHM13v2.08104,149,047 - 104,200,988 (+)NCBIT2T-CHM13v2.0
Atp6v1c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391538,662,096 - 38,692,688 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1538,662,177 - 38,692,690 (+)EnsemblGRCm39 Ensembl
GRCm381538,661,904 - 38,692,444 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1538,661,933 - 38,692,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv371538,591,659 - 38,622,199 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361538,606,543 - 38,636,472 (+)NCBIMGSCv36mm8
Celera1539,288,003 - 39,318,453 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.18NCBI
Atp6v1c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541727,356,483 - 27,375,747 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541727,340,916 - 27,376,541 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27120,231,629 - 120,435,575 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1895,767,545 - 95,971,505 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0899,521,146 - 99,725,603 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18101,832,538 - 101,883,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8101,832,538 - 101,883,956 (+)Ensemblpanpan1.1panPan2
ATP6V1C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,509,699 - 4,569,500 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,510,003 - 4,579,846 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha134,513,182 - 4,573,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0134,672,415 - 4,733,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,672,804 - 4,761,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,514,303 - 4,574,155 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,631,627 - 4,691,637 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,644,765 - 4,704,650 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530333,200,336 - 33,249,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647040,623,553 - 40,675,598 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647040,626,523 - 40,675,435 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl434,029,295 - 34,222,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1434,033,943 - 34,084,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2436,887,066 - 36,917,862 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1897,878,970 - 97,930,552 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl897,879,019 - 97,926,263 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603942,670,781 - 42,722,372 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476319,726,841 - 19,769,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476319,726,883 - 19,769,247 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v1c1
227 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:270
Count of miRNA genes:171
Interacting mature miRNAs:192
Transcripts:ENSRNOT00000006917
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat

Markers in Region
RH137726  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2769,870,201 - 69,871,517 (+)MAPPERmRatBN7.2
Rnor_6.0777,714,582 - 77,715,897NCBIRnor6.0
Rnor_5.0778,537,067 - 78,538,382UniSTSRnor5.0
RGSC_v3.4774,376,980 - 74,378,295UniSTSRGSC3.4
Celera766,927,207 - 66,928,522UniSTS
RH 3.4 Map7630.6UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006917   ⟹   ENSRNOP00000006917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl769,834,489 - 69,872,278 (+)Ensembl
Rnor_6.0 Ensembl777,678,968 - 77,716,408 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094939   ⟹   ENSRNOP00000078142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl769,834,463 - 69,857,421 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104331   ⟹   ENSRNOP00000085031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl769,834,489 - 69,872,278 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108354   ⟹   ENSRNOP00000077433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl769,834,489 - 69,872,278 (+)Ensembl
RefSeq Acc Id: NM_001011992   ⟹   NP_001011992
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,719,501 - 71,756,941 (+)NCBI
mRatBN7.2769,834,583 - 69,872,028 (+)NCBI
Rnor_6.0777,678,968 - 77,716,408 (+)NCBI
Rnor_5.0778,536,306 - 78,574,105 (-)NCBI
RGSC_v3.4774,341,301 - 74,378,806 (+)RGD
Celera766,891,594 - 66,929,033 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241602   ⟹   XP_006241664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,719,326 - 71,757,191 (+)NCBI
mRatBN7.2769,834,464 - 69,872,278 (+)NCBI
Rnor_6.0777,678,853 - 77,716,658 (+)NCBI
Rnor_5.0778,536,306 - 78,574,105 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010052959
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,719,326 - 71,744,050 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001011992   ⟸   NM_001011992
- UniProtKB: Q5FVI6 (UniProtKB/Swiss-Prot),   A0A8I5Y7J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241664   ⟸   XM_006241602
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GCD8 (UniProtKB/TrEMBL),   A0A8I5Y7J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006917   ⟸   ENSRNOT00000006917
RefSeq Acc Id: ENSRNOP00000085031   ⟸   ENSRNOT00000104331
RefSeq Acc Id: ENSRNOP00000078142   ⟸   ENSRNOT00000094939
RefSeq Acc Id: ENSRNOP00000077433   ⟸   ENSRNOT00000108354

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVI6-F1-model_v2 AlphaFold Q5FVI6 1-382 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695303
Promoter ID:EPDNEW_R5828
Type:initiation region
Name:Atp6v1c1_1
Description:ATPase H+ transporting V1 subunit C1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0777,678,887 - 77,678,947EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311082 AgrOrtholog
BioCyc Gene G2FUF-33581 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000004846 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055023757 UniProtKB/Swiss-Prot
  ENSRNOG00060007035 UniProtKB/Swiss-Prot
  ENSRNOG00065003837 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006917 ENTREZGENE
  ENSRNOT00000006917.6 UniProtKB/Swiss-Prot
  ENSRNOT00000094939.1 UniProtKB/TrEMBL
  ENSRNOT00000104331.1 UniProtKB/TrEMBL
  ENSRNOT00000108354.1 UniProtKB/TrEMBL
  ENSRNOT00055040811 UniProtKB/Swiss-Prot
  ENSRNOT00060011579 UniProtKB/Swiss-Prot
  ENSRNOT00065005624 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.100 UniProtKB/Swiss-Prot
  subunit c (vma5p) of the yeast v-atpase, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314200 IMAGE-MGC_LOAD
InterPro ATPase_V1-cplx_csu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vac_ATP_synth_c_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:299971 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109315 IMAGE-MGC_LOAD
NCBI Gene 299971 ENTREZGENE
PANTHER PTHR10137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT C 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-ATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp6v1c1 PhenoGen
RatGTEx ENSRNOG00000004846 RatGTEx
  ENSRNOG00055023757 RatGTEx
  ENSRNOG00060007035 RatGTEx
  ENSRNOG00065003837 RatGTEx
Superfamily-SCOP SSF118203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y7J1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YCN2_RAT UniProtKB/TrEMBL
  A0A8I6GCD8 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVI6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Atp6v1c1  ATPase H+ transporting V1 subunit C1  Atp6v1c1  ATPase, H+ transporting, lysosomal V1 subunit C1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27     Atp6v1c1  ATPase, H+ transporting, lysosomal V1 subunit C1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Atp6v1c1  ATPase, H+ transporting, lysosomal V1 subunit C1  Atp6v1c1  ATPase, H+ transporting, V1 subunit C, isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Atp6v1c1  ATPase, H+ transporting, V1 subunit C, isoform 1  Atp6v1c1_predicted  ATPase, H+ transporting, V1 subunit C, isoform 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Atp6v1c1_predicted  ATPase, H+ transporting, V1 subunit C, isoform 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED