Dnaaf2 (dynein, axonemal, assembly factor 2) - Rat Genome Database

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Gene: Dnaaf2 (dynein, axonemal, assembly factor 2) Rattus norvegicus
Analyze
Symbol: Dnaaf2
Name: dynein, axonemal, assembly factor 2
RGD ID: 1310311
Description: Predicted to be involved in axonemal dynein complex assembly; cilium-dependent cell motility; and epithelial cilium movement involved in extracellular fluid movement. Predicted to act upstream of or within several processes, including axonemal dynein complex assembly; establishment of left/right asymmetry; and response to retinoic acid. Predicted to be located in cytosol and dynein axonemal particle. Predicted to be part of protein folding chaperone complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 10. Orthologous to human DNAAF2 (dynein axonemal assembly factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dynein assembly factor 2, axonemal; Ktu; LOC362746; MGC109144; protein kintoun; RGD1310311; similar to chromosome 14 open reading frame 104
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,397,157 - 93,406,323 (-)NCBIGRCr8
mRatBN7.2687,661,101 - 87,670,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl687,660,821 - 87,670,199 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,060,980 - 88,070,227 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,360,415 - 88,369,662 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,800,166 - 87,809,413 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,481,439 - 91,490,189 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,481,954 - 91,490,366 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,940,346 - 100,949,096 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,142,003 - 91,149,874 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,145,463 - 91,153,330 (-)NCBI
Celera686,160,328 - 86,169,461 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18400104   PMID:19052621  


Genomics

Comparative Map Data
Dnaaf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,397,157 - 93,406,323 (-)NCBIGRCr8
mRatBN7.2687,661,101 - 87,670,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl687,660,821 - 87,670,199 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,060,980 - 88,070,227 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,360,415 - 88,369,662 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,800,166 - 87,809,413 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,481,439 - 91,490,189 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,481,954 - 91,490,366 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,940,346 - 100,949,096 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,142,003 - 91,149,874 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,145,463 - 91,153,330 (-)NCBI
Celera686,160,328 - 86,169,461 (-)NCBICelera
Cytogenetic Map6q24NCBI
DNAAF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,625,174 - 49,635,244 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,625,174 - 49,635,244 (-)EnsemblGRCh38hg38GRCh38
GRCh371450,091,892 - 50,101,962 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,161,642 - 49,171,698 (-)NCBINCBI36Build 36hg18NCBI36
Build 341449,161,643 - 49,170,485NCBI
Celera1429,951,711 - 29,961,766 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,209,024 - 30,218,848 (-)NCBIHuRef
CHM1_11450,030,897 - 50,040,895 (-)NCBICHM1_1
T2T-CHM13v2.01443,823,399 - 43,833,482 (-)NCBIT2T-CHM13v2.0
Dnaaf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,235,861 - 69,245,203 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,235,861 - 69,245,203 (-)EnsemblGRCm39 Ensembl
GRCm381269,189,087 - 69,200,083 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,189,087 - 69,198,429 (-)EnsemblGRCm38mm10GRCm38
MGSCv371270,290,825 - 70,299,416 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,108,443 - 70,117,034 (-)NCBIMGSCv36mm8
Celera1270,281,678 - 70,290,265 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Dnaaf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,020,313 - 13,027,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540913,019,941 - 13,028,378 (+)NCBIChiLan1.0ChiLan1.0
DNAAF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,749,755 - 50,769,156 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,966,264 - 49,985,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,203,426 - 30,213,629 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,513,343 - 48,523,031 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,513,696 - 48,522,800 (-)Ensemblpanpan1.1panPan2
POLE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,264,220 - 26,295,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,251,160 - 26,295,317 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha826,018,418 - 26,060,115 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,442,497 - 26,483,980 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,442,599 - 26,473,377 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,097,884 - 26,139,598 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,171,510 - 26,213,190 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,488,643 - 26,530,350 (-)NCBIUU_Cfam_GSD_1.0
Dnaaf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,294,017 - 58,302,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936583387,189 - 394,910 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936583386,806 - 394,650 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAAF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,482,208 - 179,491,142 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,482,189 - 179,491,136 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,868,584 - 199,880,401 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAAF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,665,286 - 26,674,345 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,665,106 - 26,674,063 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,981,621 - 14,990,844 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnaaf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473119,069,203 - 19,077,505 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473119,069,162 - 19,077,501 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnaaf2
76 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:81
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000059187
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat

Markers in Region
RH139148  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2687,661,975 - 87,662,225 (+)MAPPERmRatBN7.2
Rnor_6.0691,482,314 - 91,482,563NCBIRnor6.0
Rnor_5.06100,941,221 - 100,941,470UniSTSRnor5.0
RGSC_v3.4691,142,878 - 91,143,127UniSTSRGSC3.4
Celera686,161,203 - 86,161,452UniSTS
RH 3.4 Map6626.8UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 12 8 10 8 26 12 24 4
Low 3 41 45 33 9 33 8 11 48 23 17 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000059187   ⟹   ENSRNOP00000055960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl687,660,821 - 87,670,199 (-)Ensembl
Rnor_6.0 Ensembl691,481,954 - 91,490,366 (-)Ensembl
RefSeq Acc Id: NM_001014197   ⟹   NP_001014219
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,397,157 - 93,406,323 (-)NCBI
mRatBN7.2687,661,101 - 87,670,267 (-)NCBI
Rnor_6.0691,481,439 - 91,490,189 (-)NCBI
Rnor_5.06100,940,346 - 100,949,096 (-)NCBI
RGSC_v3.4691,142,003 - 91,149,874 (-)RGD
Celera686,160,328 - 86,169,461 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001014219 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89901 (Get FASTA)   NCBI Sequence Viewer  
  EDM03505 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000055960
  ENSRNOP00000055960.5
GenBank Protein Q5FVL7 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001014219   ⟸   NM_001014197
- UniProtKB: Q5FVL7 (UniProtKB/Swiss-Prot),   F1LMB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000055960   ⟸   ENSRNOT00000059187
Protein Domains
PIH1 N-terminal   PIH1D1/2/3 CS-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVL7-F1-model_v2 AlphaFold Q5FVL7 1-817 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310311 AgrOrtholog
BioCyc Gene G2FUF-37257 BioCyc
Ensembl Genes ENSRNOG00000028155 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059187 ENTREZGENE
  ENSRNOT00000059187.5 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383335 IMAGE-MGC_LOAD
InterPro Kintoun UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIH1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIH1D1/2/3_CS-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362746 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109144 IMAGE-MGC_LOAD
NCBI Gene 362746 ENTREZGENE
PANTHER PROTEIN KINTOUN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PIH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIH1_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dnaaf2 PhenoGen
RatGTEx ENSRNOG00000028155 RatGTEx
UniProt F1LMB5 ENTREZGENE, UniProtKB/TrEMBL
  KTU_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Dnaaf2  dynein, axonemal, assembly factor 2  RGD1310311  similar to chromosome 14 open reading frame 104  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310311  similar to chromosome 14 open reading frame 104  RGD1310311_predicted  similar to chromosome 14 open reading frame 104 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310311_predicted  similar to chromosome 14 open reading frame 104 (predicted)  LOC362746_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362746_predicted  similar to chromosome 14 open reading frame 104 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL