Lhfpl2 (LHFPL tetraspan subfamily member 2) - Rat Genome Database

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Gene: Lhfpl2 (LHFPL tetraspan subfamily member 2) Rattus norvegicus
Analyze
Symbol: Lhfpl2
Name: LHFPL tetraspan subfamily member 2
RGD ID: 1309869
Description: Predicted to be involved in development of primary female sexual characteristics; development of primary male sexual characteristics; and positive regulation of fertilization. Predicted to be active in membrane. Orthologous to human LHFPL2 (LHFPL tetraspan subfamily member 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: lipoma HMGIC fusion partner-like 2; lipoma HMGIC fusion partner-like 2 protein; LOC294643
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8227,016,404 - 27,169,830 (+)NCBIGRCr8
mRatBN7.2225,281,771 - 25,428,128 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl225,281,901 - 25,427,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx232,373,260 - 32,456,118 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0230,473,524 - 30,556,383 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0225,298,201 - 25,380,341 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0223,705,491 - 23,852,021 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,770,721 - 23,852,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0242,878,147 - 43,023,911 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,407,387 - 24,489,407 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1224,384,047 - 24,406,455 (+)NCBI
Celera221,418,069 - 21,501,439 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dimethylarsinic acid  (ISO)
ethanol  (ISO)
fipronil  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
methimazole  (EXP)
methoxychlor  (EXP)
methylarsonic acid  (ISO)
N-Nitrosopyrrolidine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
piroxicam  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26964900  


Genomics

Comparative Map Data
Lhfpl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8227,016,404 - 27,169,830 (+)NCBIGRCr8
mRatBN7.2225,281,771 - 25,428,128 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl225,281,901 - 25,427,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx232,373,260 - 32,456,118 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0230,473,524 - 30,556,383 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0225,298,201 - 25,380,341 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0223,705,491 - 23,852,021 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,770,721 - 23,852,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0242,878,147 - 43,023,911 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,407,387 - 24,489,407 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1224,384,047 - 24,406,455 (+)NCBI
Celera221,418,069 - 21,501,439 (+)NCBICelera
Cytogenetic Map2q12NCBI
LHFPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38578,485,230 - 78,648,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl578,485,215 - 78,770,021 (-)EnsemblGRCh38hg38GRCh38
GRCh37577,781,053 - 77,944,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36577,816,794 - 77,980,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 34577,816,809 - 77,841,867NCBI
Celera573,674,222 - 73,837,829 (-)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef572,987,888 - 73,135,012 (-)NCBIHuRef
CHM1_1577,214,339 - 77,377,632 (-)NCBICHM1_1
T2T-CHM13v2.0578,966,706 - 79,251,841 (-)NCBIT2T-CHM13v2.0
Lhfpl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391394,193,659 - 94,331,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1394,194,304 - 94,331,917 (+)EnsemblGRCm39 Ensembl
GRCm381394,057,152 - 94,195,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1394,057,796 - 94,195,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,827,751 - 94,965,364 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361395,158,549 - 95,296,163 (+)NCBIMGSCv36mm8
Celera1397,679,541 - 97,817,771 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1349.03NCBI
Lhfpl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542522,504,107 - 22,557,970 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542522,398,503 - 22,556,667 (+)NCBIChiLan1.0ChiLan1.0
LHFPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2436,655,122 - 36,819,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1534,809,565 - 34,972,913 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0536,663,171 - 36,825,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1537,151,995 - 37,314,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl537,289,046 - 37,314,043 (+)Ensemblpanpan1.1panPan2
LHFPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,255,389 - 28,279,510 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,367,033 - 29,520,677 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0328,049,631 - 28,203,008 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1327,985,849 - 28,139,437 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,964,071 - 28,117,601 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0328,291,124 - 28,444,925 (+)NCBIUU_Cfam_GSD_1.0
Lhfpl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213184,321,166 - 184,460,783 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365496,397,810 - 6,418,937 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365496,398,190 - 6,537,832 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LHFPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl287,322,934 - 87,349,878 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1287,321,119 - 87,498,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2288,879,254 - 88,970,752 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LHFPL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1472,738,214 - 72,769,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl472,737,678 - 72,835,153 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604921,585,518 - 21,745,975 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lhfpl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248692,991,062 - 3,071,841 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248692,991,062 - 3,146,048 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lhfpl2
1295 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:442
Count of miRNA genes:236
Interacting mature miRNAs:310
Transcripts:ENSRNOT00000014795
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat

Markers in Region
D2Rat182  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,413,423 - 25,413,652 (+)MAPPERmRatBN7.2
Rnor_6.0223,837,491 - 23,837,719NCBIRnor6.0
Rnor_5.0243,009,380 - 43,009,608UniSTSRnor5.0
RGSC_v3.4224,474,448 - 24,474,676UniSTSRGSC3.4
RGSC_v3.4224,474,447 - 24,474,676RGDRGSC3.4
RGSC_v3.1224,394,817 - 24,395,045RGD
Celera221,486,419 - 21,486,647UniSTS
RH 3.4 Map213.3RGD
RH 3.4 Map213.3UniSTS
RH 2.0 Map276.4RGD
SHRSP x BN Map26.9998RGD
FHH x ACI Map211.3699RGD
Cytogenetic Map2q12UniSTS
RH128002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,427,571 - 25,427,771 (+)MAPPERmRatBN7.2
Rnor_6.0223,851,639 - 23,851,838NCBIRnor6.0
Rnor_5.0243,023,528 - 43,023,727UniSTSRnor5.0
RGSC_v3.4224,489,025 - 24,489,224UniSTSRGSC3.4
Celera221,501,057 - 21,501,256UniSTS
Cytogenetic Map2q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 28 6 6 1 6 1 1 64 31 30 7 1
Low 2 15 51 35 18 35 7 10 10 4 11 4 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000014795   ⟹   ENSRNOP00000014795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl225,281,901 - 25,427,950 (+)Ensembl
Rnor_6.0 Ensembl223,770,721 - 23,852,021 (+)Ensembl
RefSeq Acc Id: NM_001106402   ⟹   NP_001099872
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,081,085 - 27,162,859 (+)NCBI
mRatBN7.2225,346,171 - 25,427,954 (+)NCBI
Rnor_6.0223,770,708 - 23,852,021 (+)NCBI
Rnor_5.0242,878,147 - 43,023,911 (+)NCBI
RGSC_v3.4224,407,387 - 24,489,407 (+)RGD
Celera221,418,069 - 21,501,439 (+)RGD
Sequence:
RefSeq Acc Id: XM_017590688   ⟹   XP_017446177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,016,696 - 27,169,830 (+)NCBI
mRatBN7.2225,281,776 - 25,428,128 (+)NCBI
Rnor_6.0223,705,491 - 23,851,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590692   ⟹   XP_017446181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,133,184 - 27,169,830 (+)NCBI
mRatBN7.2225,398,288 - 25,428,128 (+)NCBI
Rnor_6.0223,821,139 - 23,848,816 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101908   ⟹   XP_038957836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,133,162 - 27,169,830 (+)NCBI
mRatBN7.2225,398,264 - 25,428,128 (+)NCBI
RefSeq Acc Id: XM_039101909   ⟹   XP_038957837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,136,854 - 27,169,830 (+)NCBI
mRatBN7.2225,401,949 - 25,428,128 (+)NCBI
RefSeq Acc Id: XM_039101911   ⟹   XP_038957839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,016,698 - 27,169,830 (+)NCBI
mRatBN7.2225,281,771 - 25,428,128 (+)NCBI
RefSeq Acc Id: XM_039101912   ⟹   XP_038957840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,137,121 - 27,169,830 (+)NCBI
mRatBN7.2225,402,554 - 25,428,128 (+)NCBI
RefSeq Acc Id: XM_063281486   ⟹   XP_063137556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,016,404 - 27,067,283 (+)NCBI
RefSeq Acc Id: XM_063281487   ⟹   XP_063137557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,021,414 - 27,067,283 (+)NCBI
RefSeq Acc Id: XM_063281488   ⟹   XP_063137558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,021,162 - 27,169,830 (+)NCBI
RefSeq Acc Id: XM_063281489   ⟹   XP_063137559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,137,280 - 27,169,830 (+)NCBI
RefSeq Acc Id: NP_001099872   ⟸   NM_001106402
- UniProtKB: D4A0X7 (UniProtKB/TrEMBL),   A6I4W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446177   ⟸   XM_017590688
- Peptide Label: isoform X3
- UniProtKB: D4A0X7 (UniProtKB/TrEMBL),   A6I4W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446181   ⟸   XM_017590692
- Peptide Label: isoform X3
- UniProtKB: D4A0X7 (UniProtKB/TrEMBL),   A6I4W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000014795   ⟸   ENSRNOT00000014795
RefSeq Acc Id: XP_038957839   ⟸   XM_039101911
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957836   ⟸   XM_039101908
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957837   ⟸   XM_039101909
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957840   ⟸   XM_039101912
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063137556   ⟸   XM_063281486
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063137558   ⟸   XM_063281488
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063137557   ⟸   XM_063281487
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063137559   ⟸   XM_063281489
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0X7-F1-model_v2 AlphaFold D4A0X7 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309869 AgrOrtholog
BioCyc Gene G2FUF-54834 BioCyc
Ensembl Genes ENSRNOG00000011032 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014795.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Lipome_HGMIC_fus_partner-like UniProtKB/TrEMBL
KEGG Report rno:294643 UniProtKB/TrEMBL
NCBI Gene 294643 ENTREZGENE
PANTHER LHFPL TETRASPAN SUBFAMILY MEMBER 2 PROTEIN UniProtKB/TrEMBL
  PTHR12489 UniProtKB/TrEMBL
Pfam L_HGMIC_fpl UniProtKB/TrEMBL
PhenoGen Lhfpl2 PhenoGen
RatGTEx ENSRNOG00000011032 RatGTEx
UniProt A6I4W3 ENTREZGENE, UniProtKB/TrEMBL
  D4A0X7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-05 Lhfpl2  LHFPL tetraspan subfamily member 2  Lhfpl2  lipoma HMGIC fusion partner-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Lhfpl2  lipoma HMGIC fusion partner-like 2   Lhfpl2_predicted  lipoma HMGIC fusion partner-like 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Lhfpl2_predicted  lipoma HMGIC fusion partner-like 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED