Zfp606 (zinc finger protein 606) - Rat Genome Database

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Gene: Zfp606 (zinc finger protein 606) Rattus norvegicus
Analyze
Symbol: Zfp606
Name: zinc finger protein 606
RGD ID: 1309810
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human ZNF606 (zinc finger protein 606); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC292610; Znf606
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,054,118 - 82,097,574 (+)NCBIGRCr8
mRatBN7.2172,981,920 - 73,022,423 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl172,981,989 - 73,008,072 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0166,229,845 - 66,256,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,231,763 - 66,254,989 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,026,500 - 67,053,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,566,807 - 72,590,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,658,180 - 72,668,798 (+)NCBI
Celera160,783,929 - 60,810,595 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8697448  


Genomics

Comparative Map Data
Zfp606
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,054,118 - 82,097,574 (+)NCBIGRCr8
mRatBN7.2172,981,920 - 73,022,423 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl172,981,989 - 73,008,072 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0166,229,845 - 66,256,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,231,763 - 66,254,989 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,026,500 - 67,053,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,566,807 - 72,590,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,658,180 - 72,668,798 (+)NCBI
Celera160,783,929 - 60,810,595 (-)NCBICelera
Cytogenetic Map1q21NCBI
ZNF606
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381957,977,053 - 58,003,346 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1957,977,076 - 58,003,349 (-)EnsemblGRCh38hg38GRCh38
GRCh371958,488,421 - 58,514,714 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,180,252 - 63,206,526 (-)NCBINCBI36Build 36hg18NCBI36
Build 341963,180,528 - 63,208,125NCBI
Celera1955,531,922 - 55,558,196 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1954,799,593 - 54,825,790 (-)NCBIHuRef
CHM1_11958,482,306 - 58,508,543 (-)NCBICHM1_1
T2T-CHM13v2.01961,073,997 - 61,100,289 (-)NCBIT2T-CHM13v2.0
Zfp606
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,212,208 - 12,230,162 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,212,220 - 12,230,162 (+)EnsemblGRCm39 Ensembl
GRCm38712,478,280 - 12,496,235 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,478,293 - 12,496,235 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,063,654 - 13,081,584 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,384,250 - 11,401,423 (+)NCBIMGSCv36mm8
Celera710,108,086 - 10,126,016 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.52NCBI
Znf606
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955584699,005 - 715,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955584697,831 - 715,748 (-)NCBIChiLan1.0ChiLan1.0
ZNF606
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,256,318 - 64,282,656 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,042,590 - 66,071,145 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01954,988,920 - 55,021,520 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11963,816,742 - 63,849,779 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1963,816,751 - 63,842,318 (-)Ensemblpanpan1.1panPan2
ZNF606
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,891,865 - 99,916,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,892,630 - 99,914,350 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1100,248,387 - 100,319,496 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,494,387 - 100,565,712 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1100,536,028 - 100,558,442 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11100,139,536 - 100,210,635 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,851,943 - 99,922,801 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,607,042 - 100,678,155 (+)NCBIUU_Cfam_GSD_1.0
Znf606
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409349153,168 - 173,287 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936897534,642 - 553,051 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936897532,116 - 553,557 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC102158443
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl662,695,610 - 62,719,642 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1662,695,595 - 62,739,737 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,292,730 - 57,378,697 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF606
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,304,214 - 50,329,513 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660453,560,344 - 3,594,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf606
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624832492,352 - 509,231 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624832489,758 - 518,498 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp606
153 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:124
Interacting mature miRNAs:133
Transcripts:ENSRNOT00000025981, ENSRNOT00000073006
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat

Markers in Region
RH130550  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2172,995,097 - 72,995,296 (-)MAPPERmRatBN7.2
Rnor_6.0166,243,285 - 66,243,483NCBIRnor6.0
Rnor_5.0167,039,273 - 67,039,471UniSTSRnor5.0
RGSC_v3.4172,578,189 - 72,578,387UniSTSRGSC3.4
Celera160,797,369 - 60,797,567UniSTS
RH 3.4 Map1765.39UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 12 4 7 4 5 5 67 22 34 7 5
Low 3 42 45 37 12 37 3 6 7 13 7 4 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001063437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006228139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_218283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U78141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000025981   ⟹   ENSRNOP00000025981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl172,982,206 - 73,008,072 (+)Ensembl
Rnor_6.0 Ensembl166,231,763 - 66,254,989 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000073006   ⟹   ENSRNOP00000067328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl166,232,109 - 66,237,501 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079249   ⟹   ENSRNOP00000074081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl172,981,989 - 72,985,101 (+)Ensembl
Rnor_6.0 Ensembl166,253,610 - 66,254,989 (-)Ensembl
RefSeq Acc Id: XM_006228139   ⟹   XP_006228201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,118 - 82,080,258 (+)NCBI
mRatBN7.2172,981,920 - 73,010,371 (+)NCBI
Rnor_6.0166,229,845 - 66,256,901 (-)NCBI
Rnor_5.0167,026,500 - 67,053,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100665   ⟹   XP_038956593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,169 - 82,080,258 (+)NCBI
mRatBN7.2172,981,973 - 73,010,371 (+)NCBI
RefSeq Acc Id: XM_039100667   ⟹   XP_038956595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,190 - 82,080,258 (+)NCBI
mRatBN7.2172,981,973 - 73,010,371 (+)NCBI
RefSeq Acc Id: XM_039100670   ⟹   XP_038956598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,174 - 82,080,258 (+)NCBI
mRatBN7.2172,981,979 - 73,010,371 (+)NCBI
RefSeq Acc Id: XM_063277328   ⟹   XP_063133398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,448 - 82,080,258 (+)NCBI
RefSeq Acc Id: XM_063277354   ⟹   XP_063133424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,174 - 82,075,888 (+)NCBI
RefSeq Acc Id: XM_063277356   ⟹   XP_063133426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,185 - 82,094,612 (+)NCBI
RefSeq Acc Id: XR_010059570
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,448 - 82,094,612 (+)NCBI
RefSeq Acc Id: XR_010059571
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,054,448 - 82,097,574 (+)NCBI
RefSeq Acc Id: XP_006228201   ⟸   XM_006228139
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000074081   ⟸   ENSRNOT00000079249
RefSeq Acc Id: ENSRNOP00000067328   ⟸   ENSRNOT00000073006
RefSeq Acc Id: ENSRNOP00000025981   ⟸   ENSRNOT00000025981
RefSeq Acc Id: XP_038956593   ⟸   XM_039100665
- Peptide Label: isoform X1
- UniProtKB: G3V8H6 (UniProtKB/TrEMBL),   A6KQN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956595   ⟸   XM_039100667
- Peptide Label: isoform X1
- UniProtKB: G3V8H6 (UniProtKB/TrEMBL),   A6KQN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956598   ⟸   XM_039100670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133424   ⟸   XM_063277354
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063133426   ⟸   XM_063277356
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133398   ⟸   XM_063277328
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V8H6-F1-model_v2 AlphaFold G3V8H6 1-787 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689680
Promoter ID:EPDNEW_R203
Type:single initiation site
Name:Zfp606_1
Description:zinc finger protein 606
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0166,255,053 - 66,255,113EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309810 AgrOrtholog
BioCyc Gene G2FUF-60735 BioCyc
Ensembl Genes ENSRNOG00000019127 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025981.7 UniProtKB/TrEMBL
  ENSRNOT00000079249.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 292610 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 20 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp606 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019127 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K765_RAT UniProtKB/TrEMBL
  A6KQN5 ENTREZGENE, UniProtKB/TrEMBL
  G3V8H6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-19 Zfp606  zinc finger protein 606  Znf606  zinc finger protein 606  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Znf606  zinc finger protein 606  Zfp606  zinc finger protein 606  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Zfp606  zinc finger protein 606  Zfp606_predicted  zinc finger protein 606 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zfp606_predicted  zinc finger protein 606 (predicted)      Symbol and Name status set to approved 70820 APPROVED