Resf1 (retroelement silencing factor 1) - Rat Genome Database

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Gene: Resf1 (retroelement silencing factor 1) Rattus norvegicus
Analyze
Symbol: Resf1
Name: retroelement silencing factor 1
RGD ID: 1309621
Description: Predicted to enable histone methyltransferase binding activity. Predicted to be involved in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate and positive regulation of DNA methylation-dependent heterochromatin formation. Predicted to act upstream of or within response to bacterium. Predicted to be part of gamma-tubulin complex. Predicted to be active in nucleus. Orthologous to human RESF1 (retroelement silencing factor 1); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC316982; RGD1309621; similar to hypothetical protein FLJ10652; uncharacterized protein KIAA1551 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,057,165 - 184,093,374 (+)NCBIGRCr8
mRatBN7.24182,325,913 - 182,362,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,335,454 - 182,362,054 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04183,879,177 - 183,905,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,896,303 - 183,905,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,998,508 - 248,024,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,780,191 - 186,789,644 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14187,025,314 - 187,029,613 (+)NCBI
Celera4170,801,085 - 170,827,810 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
gamma-tubulin complex  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23012479   PMID:29728365  


Genomics

Comparative Map Data
Resf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,057,165 - 184,093,374 (+)NCBIGRCr8
mRatBN7.24182,325,913 - 182,362,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,335,454 - 182,362,054 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04183,879,177 - 183,905,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,896,303 - 183,905,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,998,508 - 248,024,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,780,191 - 186,789,644 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14187,025,314 - 187,029,613 (+)NCBI
Celera4170,801,085 - 170,827,810 (+)NCBICelera
Cytogenetic Map4q44NCBI
RESF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,959,415 - 31,993,107 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,959,370 - 31,993,107 (+)EnsemblGRCh38hg38GRCh38
GRCh371232,112,349 - 32,146,041 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,003,620 - 32,037,308 (+)NCBINCBI36Build 36hg18NCBI36
Celera1211,934,148 - 11,967,834 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1231,863,530 - 31,897,223 (+)NCBIHuRef
CHM1_11232,078,356 - 32,112,040 (+)NCBICHM1_1
T2T-CHM13v2.01231,835,397 - 31,869,084 (+)NCBIT2T-CHM13v2.0
Resf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,210,907 - 149,237,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,210,912 - 149,237,161 (+)EnsemblGRCm39 Ensembl
GRCm386149,309,409 - 149,335,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,309,414 - 149,335,663 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,257,936 - 149,284,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,266,601 - 149,292,826 (+)NCBIMGSCv36mm8
Celera6152,343,904 - 152,370,153 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.89NCBI
Resf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555053,684,848 - 3,709,624 (-)NCBIChiLan1.0ChiLan1.0
RESF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21064,767,476 - 64,800,905 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11264,763,870 - 64,798,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01254,238,276 - 54,272,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11256,829,272 - 56,863,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1256,829,272 - 56,863,359 (-)Ensemblpanpan1.1panPan2
RESF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12716,829,611 - 16,856,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2716,829,968 - 16,839,166 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,560,294 - 29,589,056 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02717,009,033 - 17,037,820 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,009,052 - 17,037,829 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12716,819,667 - 16,848,433 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02716,852,789 - 16,881,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,714,347 - 29,743,126 (+)NCBIUU_Cfam_GSD_1.0
Resf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,414,879 - 77,441,069 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366074,247,824 - 4,274,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RESF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl542,261,304 - 42,299,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1542,263,560 - 42,299,596 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2545,546,617 - 45,582,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RESF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,402,505 - 31,436,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,402,760 - 31,436,533 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,503,661 - 3,537,420 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Resf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247784,192,168 - 4,224,027 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Resf1
181 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:115
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000055437
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

Markers in Region
BE628502  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,353,533 - 182,353,654 (+)MAPPERmRatBN7.2
Rnor_6.04183,897,294 - 183,897,414NCBIRnor6.0
Rnor_5.04248,015,678 - 248,015,798UniSTSRnor5.0
RGSC_v3.44186,781,131 - 186,781,251UniSTSRGSC3.4
Celera4170,819,297 - 170,819,417UniSTS
Cytogenetic Map4q44UniSTS
RH143657  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,361,625 - 182,361,731 (+)MAPPERmRatBN7.2
Rnor_6.04183,905,384 - 183,905,489NCBIRnor6.0
Rnor_5.04248,023,768 - 248,023,873UniSTSRnor5.0
RGSC_v3.44186,789,221 - 186,789,326UniSTSRGSC3.4
Celera4170,827,387 - 170,827,492UniSTS
RH 3.4 Map41133.75UniSTS
Cytogenetic Map4q44UniSTS
BE105191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,355,872 - 182,356,040 (+)MAPPERmRatBN7.2
Rnor_6.04183,899,633 - 183,899,800NCBIRnor6.0
Rnor_5.04248,018,017 - 248,018,184UniSTSRnor5.0
RGSC_v3.44186,783,470 - 186,783,637UniSTSRGSC3.4
Celera4170,821,636 - 170,821,803UniSTS
RH 3.4 Map41132.85UniSTS
Cytogenetic Map4q44UniSTS
RH136867  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,361,711 - 182,361,902 (+)MAPPERmRatBN7.2
Rnor_6.04183,905,470 - 183,905,660NCBIRnor6.0
Rnor_5.04248,023,854 - 248,024,044UniSTSRnor5.0
RGSC_v3.44186,789,307 - 186,789,497UniSTSRGSC3.4
Celera4170,827,473 - 170,827,663UniSTS
Cytogenetic Map4q44UniSTS
UniSTS:471005  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,355,380 - 182,356,165 (+)MAPPERmRatBN7.2
Rnor_6.04183,899,141 - 183,899,925NCBIRnor6.0
Rnor_5.04248,017,525 - 248,018,309UniSTSRnor5.0
RGSC_v3.44186,782,978 - 186,783,762UniSTSRGSC3.4
Celera4170,821,144 - 170,821,928UniSTS
Cytogenetic Map4q44UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 39 47 31 19 31 8 8 71 34 41 11 8
Low 4 10 10 10 2 3 1
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_353788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_600908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_600909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC086522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000055437   ⟹   ENSRNOP00000052305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4182,335,495 - 182,362,054 (+)Ensembl
Rnor_6.0 Ensembl4183,896,303 - 183,905,297 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094270   ⟹   ENSRNOP00000082777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4182,335,454 - 182,361,987 (+)Ensembl
RefSeq Acc Id: NM_001427734   ⟹   NP_001414663
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,066,780 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_006237708   ⟹   XP_006237770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
mRatBN7.24182,335,779 - 182,362,054 (+)NCBI
Rnor_6.04183,879,177 - 183,905,807 (+)NCBI
Rnor_5.04247,998,508 - 248,024,196 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763457   ⟹   XP_008761679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
mRatBN7.24182,335,779 - 182,361,407 (+)NCBI
Rnor_6.04183,879,177 - 183,905,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108930   ⟹   XP_038964858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,178 - 184,093,374 (+)NCBI
mRatBN7.24182,325,913 - 182,362,054 (+)NCBI
RefSeq Acc Id: XM_039108932   ⟹   XP_038964860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
mRatBN7.24182,335,779 - 182,362,054 (+)NCBI
RefSeq Acc Id: XM_039108933   ⟹   XP_038964861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
mRatBN7.24182,335,779 - 182,362,054 (+)NCBI
RefSeq Acc Id: XM_039108935   ⟹   XP_038964863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,191 - 184,093,374 (+)NCBI
mRatBN7.24182,325,916 - 182,362,054 (+)NCBI
RefSeq Acc Id: XM_039108936   ⟹   XP_038964864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
mRatBN7.24182,335,779 - 182,362,054 (+)NCBI
RefSeq Acc Id: XM_039108937   ⟹   XP_038964865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
mRatBN7.24182,335,779 - 182,361,407 (+)NCBI
RefSeq Acc Id: XM_063286199   ⟹   XP_063142269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286200   ⟹   XP_063142270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286201   ⟹   XP_063142271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286202   ⟹   XP_063142272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286203   ⟹   XP_063142273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286204   ⟹   XP_063142274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,238 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286205   ⟹   XP_063142275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286206   ⟹   XP_063142276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286207   ⟹   XP_063142277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,165 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286208   ⟹   XP_063142278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,165 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286209   ⟹   XP_063142279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,169 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286210   ⟹   XP_063142280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,178 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286211   ⟹   XP_063142281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,057,169 - 184,093,374 (+)NCBI
RefSeq Acc Id: XM_063286212   ⟹   XP_063142282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,089,710 (+)NCBI
RefSeq Acc Id: XR_010065651
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,089,771 (+)NCBI
RefSeq Acc Id: XR_353788
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,067,106 - 184,089,771 (+)NCBI
mRatBN7.24182,335,779 - 182,362,054 (+)NCBI
Rnor_6.04183,879,177 - 183,905,807 (+)NCBI
Rnor_5.04247,998,508 - 248,024,196 (+)NCBI
Sequence:
RefSeq Acc Id: XP_006237770   ⟸   XM_006237708
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761679   ⟸   XM_008763457
- Peptide Label: isoform X2
- UniProtKB: E9PU57 (UniProtKB/TrEMBL),   A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000052305   ⟸   ENSRNOT00000055437
RefSeq Acc Id: XP_038964858   ⟸   XM_039108930
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964863   ⟸   XM_039108935
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964860   ⟸   XM_039108932
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964861   ⟸   XM_039108933
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964864   ⟸   XM_039108936
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964865   ⟸   XM_039108937
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZXS0 (UniProtKB/TrEMBL),   A6IN75 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082777   ⟸   ENSRNOT00000094270
RefSeq Acc Id: XP_063142277   ⟸   XM_063286207
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142278   ⟸   XM_063286208
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142281   ⟸   XM_063286211
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142279   ⟸   XM_063286209
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142280   ⟸   XM_063286210
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142274   ⟸   XM_063286204
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001414663   ⟸   NM_001427734
RefSeq Acc Id: XP_063142270   ⟸   XM_063286200
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142272   ⟸   XM_063286202
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142273   ⟸   XM_063286203
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142275   ⟸   XM_063286205
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142271   ⟸   XM_063286201
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142269   ⟸   XM_063286199
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142276   ⟸   XM_063286206
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142282   ⟸   XM_063286212
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PU57-F1-model_v2 AlphaFold E9PU57 1-1509 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309621 AgrOrtholog
BioCyc Gene G2FUF-42352 BioCyc
Ensembl Genes ENSRNOG00000036913 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055437.5 UniProtKB/TrEMBL
  ENSRNOT00000094270.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7302977 IMAGE-MGC_LOAD
InterPro DUF4617 UniProtKB/TrEMBL
MGC_CLONE MGC:105661 IMAGE-MGC_LOAD
NCBI Gene 316982 ENTREZGENE
PANTHER PTHR21604 UniProtKB/TrEMBL
  RETROELEMENT SILENCING FACTOR 1 UniProtKB/TrEMBL
Pfam DUF4617 UniProtKB/TrEMBL
PhenoGen Resf1 PhenoGen
RatGTEx ENSRNOG00000036913 RatGTEx
UniProt A0A8I5ZXS0 ENTREZGENE, UniProtKB/TrEMBL
  A6IN75 ENTREZGENE, UniProtKB/TrEMBL
  E9PU57 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-29 Resf1  retroelement silencing factor 1  RGD1309621  similar to hypothetical protein FLJ10652  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309621  similar to hypothetical protein FLJ10652  RGD1309621_predicted  similar to hypothetical protein FLJ10652 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309621_predicted  similar to hypothetical protein FLJ10652 (predicted)  LOC316982_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316982_predicted  similar to hypothetical protein FLJ10652 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL