Fip1l1 (factor interacting with PAPOLA and CPSF1)

Gene: Fip1l1 (factor interacting with PAPOLA and CPSF1) Rattus norvegicus

Analyze

Symbol:

Fip1l1

Name:

factor interacting with PAPOLA and CPSF1

RGD ID:

1309336

Description:

Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be located in nucleoplasm. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; mRNA decay pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

FIP1 like 1 (S. cerevisiae); FIP1-like 1 protein; LOC289582; MGC93674; pre-mRNA 3'-end-processing factor FIP1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FIP1L1 (factor interacting with PAPOLA and CPSF1)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Fip1l1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fip1l1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FIP1L1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FIP1L1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fip1l1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FIP1L1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FIP1L1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fip1l1 (factor interacting with PAPOLA and CPSF1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FIP1L1 (factor interacting with PAPOLA and CPSF1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fip1l1 (factor interacting with PAPOLA and CPSF1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fip1l1b (FIP1 like 1b (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fip1l1a (FIP1 like 1a (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	FIP1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Fip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	fipp-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	fip1l1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI		GRCr8
mRatBN7.2	14	33,615,210 - 33,675,742 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	33,617,720 - 33,675,708 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	33,964,910 - 34,022,751 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	35,272,481 - 35,330,326 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	33,757,969 - 33,815,810 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	36,150,381 - 36,208,395 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	36,150,399 - 36,208,373 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	35,993,131 - 36,050,974 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	35,994,059 - 36,051,901 (-)	NCBI
Celera	14	32,879,139 - 32,936,980 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congestive heart failure (ISO)

Eosinophilia (ISO)

genetic disease (ISO)

hypereosinophilic syndrome (ISO)

Pdgfra-Associated Chronic Eosinophilic Leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

caffeine (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

menadione (ISO)

methotrexate (ISO)

methoxychlor (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

succimer (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

theophylline (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA processing (IEA)

Cellular Component

mRNA cleavage and polyadenylation specificity factor complex (IBA,IEA,ISO)

nucleoplasm (ISO)

nucleus (IEA,ISO)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

3'-end pre-mRNA processing pathway (ISO)

mRNA decay pathway (IEA)

RNA polymerase II transcription termination pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Response to imatinib mesylate in patients with hypereosinophilic syndrome.	Arefi M, etal., Int J Hematol. 2012 Sep;96(3):320-6. doi: 10.1007/s12185-012-1141-7. Epub 2012 Jul 18.
2.	Pre-mRNA 3'-end processing complex assembly and function.	Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.	Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	[Characteristics of cytogenetics and molecular biology in patients with eosinophilia].	Qu SQ, etal., Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2012 Oct;20(5):1216-20.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:16396499	PMID:19224921	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Fip1l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI		GRCr8
mRatBN7.2	14	33,615,210 - 33,675,742 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	33,617,720 - 33,675,708 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	33,964,910 - 34,022,751 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	35,272,481 - 35,330,326 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	33,757,969 - 33,815,810 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	36,150,381 - 36,208,395 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	36,150,399 - 36,208,373 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	35,993,131 - 36,050,974 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	35,994,059 - 36,051,901 (-)	NCBI
Celera	14	32,879,139 - 32,936,980 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

FIP1L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	53,377,641 - 53,460,862 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	53,377,569 - 53,464,382 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	54,243,808 - 54,327,029 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	53,938,620 - 54,020,599 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	54,084,790 - 54,166,770	NCBI
Celera	4	51,741,311 - 51,823,579 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI
HuRef	4	50,188,974 - 50,271,212 (+)	NCBI		HuRef
CHM1_1	4	54,279,549 - 54,361,766 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	56,864,883 - 56,948,080 (+)	NCBI		T2T-CHM13v2.0

Fip1l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	74,695,774 - 74,759,451 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	74,696,110 - 74,759,461 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	74,535,438 - 74,598,790 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	74,535,449 - 74,598,800 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	74,931,507 - 74,993,149 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	74,817,214 - 74,878,821 (+)	NCBI		MGSCv36	mm8
Celera	5	71,800,525 - 71,862,059 (+)	NCBI		Celera
Cytogenetic Map	5	C3.3	NCBI
cM Map	5	39.51	NCBI

Fip1l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	17,265,269 - 17,334,197 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955447	17,265,269 - 17,334,197 (-)	NCBI	ChiLan1.0	ChiLan1.0

FIP1L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	76,350,462 - 76,432,842 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	76,551,653 - 76,637,812 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	70,495,627 - 70,579,059 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	77,050,856 - 77,132,995 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	77,050,858 - 77,133,003 (-)	Ensembl	panpan1.1		panPan2

FIP1L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	46,011,473 - 46,083,024 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	46,011,681 - 46,083,076 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	45,969,394 - 46,041,199 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	46,621,617 - 46,693,402 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	46,621,616 - 46,696,251 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	46,295,076 - 46,366,840 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	45,827,152 - 45,898,891 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	46,700,314 - 46,771,799 (+)	NCBI		UU_Cfam_GSD_1.0

Fip1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	30,101,404 - 30,171,613 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	16,126,536 - 16,193,962 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	16,126,608 - 16,194,729 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FIP1L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	8	40,157,263 - 40,235,084 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	42,284,295 - 42,351,888 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FIP1L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	15,072,962 - 15,147,216 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	15,069,470 - 15,147,178 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666066	15,944,492 - 16,026,941 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fip1l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	16,071,097 - 16,145,052 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	16,067,962 - 16,145,116 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fip1l1
168 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	148
Count of miRNA genes:	113
Interacting mature miRNAs:	119
Transcripts:	ENSRNOT00000045050
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9088978	39057237	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	17593761	42336881	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17622561	42337007	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18631345	42337007	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2324617	Coatc2	Coat color QTL 2		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	14	30767025	39153750	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat

Markers in Region

RH136825

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	33,617,915 - 33,618,780 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	36,150,570 - 36,151,433	NCBI	Rnor6.0
Rnor_5.0	14	35,976,905 - 35,977,768	UniSTS	Rnor5.0
RGSC_v3.4	14	35,993,266 - 35,994,129	UniSTS	RGSC3.4
Celera	14	32,879,274 - 32,880,137	UniSTS
RH 3.4 Map	14	377.09	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	10	74	35	41	11	8
Low								1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU224276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000045050 ⟹ ENSRNOP00000049728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	33,617,808 - 33,675,675 (-)	Ensembl
Rnor_6.0 Ensembl	14	36,150,437 - 36,208,278 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088448 ⟹ ENSRNOP00000072529

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	33,617,789 - 33,675,672 (-)	Ensembl
Rnor_6.0 Ensembl	14	36,150,399 - 36,208,373 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098461 ⟹ ENSRNOP00000082160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	33,617,820 - 33,675,708 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113872 ⟹ ENSRNOP00000083703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	33,617,720 - 33,675,651 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119524 ⟹ ENSRNOP00000088121

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	33,617,789 - 33,675,672 (-)	Ensembl

RefSeq Acc Id:

NM_001008295 ⟹ NP_001008296

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,971,912 - 34,029,753 (-)	NCBI
mRatBN7.2	14	33,617,781 - 33,675,626 (-)	NCBI
Rnor_6.0	14	36,150,435 - 36,208,278 (-)	NCBI
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI
RGSC_v3.4	14	35,993,131 - 36,050,974 (-)	RGD
Celera	14	32,879,139 - 32,936,980 (-)	RGD

Sequence:

show sequence

GTCTCGCGCTCTCTTCGTTCGCTTACCAGCGGGTTCCCTCCCCTTCTCGCGCCCTGAGACGGCG
AGGCTGGGGAAGGGGTTGAAAGGGGCTGTTGATCGTCGCCTTTAACTTGTTCGAGGGGCGGCCA
TGTCGGCCGGCGAGGTGGAGCGTCTGGTGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGAGGA
AGAGTGGCTGTATGGCGGCCCGTGGGACGTGCATGTGCACAGTGATTTGGCAAAGGATCTAGAT
GAAAATGAAGTTGAAAGGCCAGAAGAAGAAAATGCCAGTGCTAATCCTCCTTCTGGAATTGAAG
AGGAAGCTGCTGAAAATGGCGTGGCGAAACCGAAAGTGACCGAGACTGAAGACGACAGTGATAG
TGACAGTGACGATGATGAAGATGACGTTCACGTTACTATTGGAGACATCAAAACGGGAGCTCCA
CAGTATGGGAGTTATGGAACAGCACCAGTAAATCTTAATATCAAGGCAGGGGGAAGAGTTTATG
GAAATACAGGAACCAAAGTCAAAGGAGTAGACCTCGATGCCCCTGGCAGCATTAATGGAGTTCC
ACTCTTGGAAGTAGATTTGGATTCTTTTGAAGATAAACCATGGCGGAAACCTGGTGCTGATCTT
TCCGATTATTTTAATTATGGCTTTAATGAAGATACTTGGAAAGCTTACTGTGAAAAACAAAAGA
GGATCCGAATGGGACTGGAAGTTATACCCGTTACTTCAACGACAAACAAGATTACGGTACAGCA
AGGGAGAACTGGAAATTCAGAGAAAGAAGCAGCACTTCCATCTACAAAAGCTGAGTTTACTTCT
CCGCCATCATTGTTCAAGACTGGTCTGCCACCAAGCAGGAGATTACCTGGAGCAATCGATGTCA
TTGGTCAAACAATAACCATCAGCCGAGTAGAAGGAAGACGGCGTGCAAATGAGAACAGCAATAT
ACAGGTTCTTTCTGACAGATCTGCCACTGAAGTAGACAACAATTTCAGCAAACCACCTCCATTT
TTCCCTCCAGGGGCTCCTCCTACTCACCTTCCTCCTCCTCCATTTCTTCCACCTCCTCCAACTG
TCAGCACTGCTCCACCTTTGATTCCACCACCAGGTTTCCCCCCTCCACCAGGCGCTCCACCTCC
ATCTCTTATACCGACAATAGAAAGTGGCCATTCCTCTGGTTACGACAGCCGTTCTGCACGGGCG
TTTCCATATGGCAATGTTGCCTTTCCCCACCTTACCAGTTCCGCTCCCTCATGGCCTAGCCTTG
TGGATACCACTAAGCAGTGGGACTATTATGCACGGAGAGAAAAAGATCGAGATCGAGACCGAGA
GAGAGACCGAGACAGAGAAAGGGAGAGAGACCGGGACAGAGAAAGGGAGCGCACCCGGGAGCGA
GAGCGGGAGCGGGACCACAGCCCCACCCCAAGTGTTTTCAACAGTGATGAAGAGCGATACAGAT
ACAGGGAGTATGCAGAGAGAGGCTATGAGCGCCACAGAGCTAGTCGGGAGAAAGAAGAGCGGCA
CAGAGAACGACGGCACAGAGAGAAGGAGGAAACAAGACACAAGTCCTCTCGCAGTAATAGTAGA
CGTCGTCATGAAAGTGAAGAAGGGGACAGTCACAGAAGACACAAGCACAAAAAGTCTAAAAGGA
GCAAAGAAGGAAAAGAGGCTGGCAGCGAGCCGGTCCCTGAGCAGGAGAGCACGGAAGCTGCCCC
TGCCGAGTAGGCGCCACCTCTTATGTACGTCAGCCCCAGAAATAGATGCTATAAATCTCCTTAT
TTTTCTGGATAATGTTTAAGAAATGTACCTTTAATCTTGTTCTGTTAGAATGAAACGTTAACTT
TTTCTTTTCCAAAATAAAAGTGTGCATTTTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_006250882 ⟹ XP_006250944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,617,727 - 33,675,737 (-)	NCBI
Rnor_6.0	14	36,150,427 - 36,208,392 (-)	NCBI
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI

Sequence:

show sequence

AAGCGAATCCACCTAGAGACGCCGCGCCGCTTGGATACTGCTGCGCATGCGCAGGCGGACCAGT
TGCTGAATATTCACGGTCGCCGCCTCCGCCGAGGTCGACCCTGGATTTGAGTCTCGCGCTCTCT
TCGTTCGCTTACCAGCGGGTTCCCTCCCCTTCTCGCGCCCTGAGACGGCGAGGCTGGGGAAGGG
GTTGAAAGGGGCTGTTGATCGTCGCCTTTAACTTGTTCGAGGGGCGGCCATGTCGGCCGGCGAG
GTGGAGCGTCTGGTGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGAGGAAGAGTGGCTGTATG
GCGGCCCGTGGGACGTGCATGTGCACAGTGATTTGGCAAAGGATCTAGATGAAAATGAAGTTGA
AAGGCCAGAAGAAGAAAATGCCAGTGCTAATCCTCCTTCTGGAATTGAAGAGGAAGCTGCTGAA
AATGGCGTGGCGAAACCGAAAGTGACCGAGACTGAAGACGACAGTGATAGTGACAGTGACGATG
ATGAAGATGACGTTCACGTTACTATTGGAGACATCAAAACGGGAGCTCCACAGTATGGGAGTTA
TGGAACAGCACCAGTAAATCTTAATATCAAGGCAGGGGGAAGAGTTTATGGAAATACAGGAACC
AAAGTCAAAGGAGTAGACCTCGATGCCCCTGGCAGCATTAATGGAGTTCCACTCTTGGAAGTAG
ATTTGGATTCTTTTGAAGATAAACCATGGCGGAAACCTGGTGCTGATCTTTCCGATTATTTTAA
TTATGGCTTTAATGAAGATACTTGGAAAGCTTACTGTGAAAAACAAAAGAGGATCCGAATGGGA
CTGGAAGTTATACCCGTTACTTCAACGACAAACAAGATTACGGCCGAAGACTGTACTATGGAAG
TCACACCAGGTGCAGAGATCCAAGATGGCAGATTCAATCTTTTTAAGGTACAGCAAGGGAGAAC
TGGAAATTCAGAGAAAGAAGCAGCACTTCCATCTACAAAAGCTGAGTTTACTTCTCCGCCATCA
TTGTTCAAGACTGGTCTGCCACCAAGCAGAAACAGCACCTCTTCTCAGTCTCAGACAAGTACTG
CCTCCAGAAAAGCCAGTTCAAGCGTTGGGAAGTGGCAGGATCGATATGGGAGGGCCGAGTCACC
TGATCTAAGGAGATTACCTGGAGCAATCGATGTCATTGGTCAAACAATAACCATCAGCCGAGTA
GAAGGAAGACGGCGTGCAAATGAGAACAGCAATATACAGGTTCTTTCTGACAGATCTGCCACTG
AAGTAGACAACAATTTCAGCAAACCACCTCCATTTTTCCCTCCAGGGGCTCCTCCTACTCACCT
TCCTCCTCCTCCATTTCTTCCACCTCCTCCAACTGTCAGCACTGCTCCACCTTTGATTCCACCA
CCAGGTATTCCAATAACTGTACCACCTCCAGGTTTCCCCCCTCCACCAGGCGCTCCACCTCCAT
CTCTTATACCGACAATAGAAAGTGGCCATTCCTCTGGTTACGACAGCCGTTCTGCACGGGCGTT
TCCATATGGCAATGTTGCCTTTCCCCACCTTACCAGTTCCGCTCCCTCATGGCCTAGCCTTGTG
GATACCACTAAGCAGTGGGACTATTATGCACGGAGAGAAAAAGATCGAGATCGAGACCGAGAGA
GAGACCGAGACAGAGAAAGGGAGAGAGACCGGGACAGAGAAAGGGAGCGCACCCGGGAGCGAGA
GCGGGAGCGGGACCACAGCCCCACCCCAAGTGTTTTCAACAGTGATGAAGAGCGATACAGATAC
AGGGAGTATGCAGAGAGAGGCTATGAGCGCCACAGAGCTAGTCGGGAGAAAGAAGAGCGGCACA
GAGAACGACGGCACAGAGAGAAGGAGGAAACAAGACACAAGTCCTCTCGCAGTAATAGTAGACG
TCGTCATGAAAGTGAAGAAGGGGACAGTCACAGAAGACACAAGCACAAAAAGTCTAAAAGGAGC
AAAGAAGGAAAAGAGGCTGGCAGCGAGCCGGTCCCTGAGCAGGAGAGCACGGAAGCTGCCCCTG
CCGAGTAGGCGCCACCTCTTATGTACGTCAGCCCCAGAAATAGATGCTATAAATCTCCTTATTT
TTCTGGATAATGTTTAAGAAATGTACCTTTAATCTTGTTCTGTTAGAATGAAACGTTAACTTTT
TCTTTTCCAAAATAAAAGTGTGCATTTTTTTGTGTTAAGTTAAAAA

hide sequence

RefSeq Acc Id:

XM_006250883 ⟹ XP_006250945

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,615,210 - 33,675,738 (-)	NCBI
Rnor_6.0	14	36,150,427 - 36,208,393 (-)	NCBI
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI

Sequence:

show sequence

GAAGCGAATCCACCTAGAGACGCCGCGCCGCTTGGATACTGCTGCGCATGCGCAGGCGGACCAG
TTGCTGAATATTCACGGTCGCCGCCTCCGCCGAGGTCGACCCTGGATTTGAGTCTCGCGCTCTC
TTCGTTCGCTTACCAGCGGGTTCCCTCCCCTTCTCGCGCCCTGAGACGGCGAGGCTGGGGAAGG
GGTTGAAAGGGGCTGTTGATCGTCGCCTTTAACTTGTTCGAGGGGCGGCCATGTCGGCCGGCGA
GGTGGAGCGTCTGGTGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGAGGAAGAGTGGCTGTAT
GGCGGCCCGTGGGACGTGCATGTGCACAGTGATTTGGCAAAGGATCTAGATGAAAATGAAGTTG
AAAGGCCAGAAGAAGAAAATGCCAGTGCTAATCCTCCTTCTGGAATTGAAGAGGAAGCTGCTGA
AAATGGCGTGGCGAAACCGAAAGTGACCGAGACTGAAGACGACAGTGATAGTGACAGTGACGAT
GATGAAGATGACGTTCACGTTACTATTGGAGACATCAAAACGGGAGCTCCACAGTATGGGAGTT
ATGGAACAGCACCAGTAAATCTTAATATCAAGGCAGGGGGAAGAGTTTATGGAAATACAGGAAC
CAAAGTCAAAGGAGTAGACCTCGATGCCCCTGGCAGCATTAATGGAGTTCCACTCTTGGAAGTA
GATTTGGATTCTTTTGAAGATAAACCATGGCGGAAACCTGGTGCTGATCTTTCCGATTATTTTA
ATTATGGCTTTAATGAAGATACTTGGAAAGCTTACTGTGAAAAACAAAAGAGGATCCGAATGGG
ACTGGAAGTTATACCCGTTACTTCAACGACAAACAAGATTACGGCCGAAGACTGTACTATGGAA
GTCACACCAGGTGCAGAGATCCAAGATGGCAGATTCAATCTTTTTAAGGTACAGCAAGGGAGAA
CTGGAAATTCAGAGAAAGAAGCAGCACTTCCATCTACAAAAGCTGAGTTTACTTCTCCGCCATC
ATTGTTCAAGACTGGTCTGCCACCAAGCAGAAACAGCACCTCTTCTCAGTCTCAGACAAGTACT
GCCTCCAGAAAAGCCAGTTCAAGCGTTGGGAAGTGGCAGGATCGATATGGGAGGGCCGAGTCAC
CTGATCTAAGGAGATTACCTGGAGCAATCGATGTCATTGGTCAAACAATAACCATCAGCCGAGT
AGAAGGAAGACGGCGTGCAAATGAGAACAGCAATATACAGGTTCTTTCTGACAGATCTGCCACT
GAAGTAGACAACAATTTCAGCAAACCACCTCCATTTTTCCCTCCAGGGGCTCCTCCTACTCACC
TTCCTCCTCCTCCATTTCTTCCACCTCCTCCAACTGTCAGCACTGCTCCACCTTTGATTCCACC
ACCAGGTTTCCCCCCTCCACCAGGCGCTCCACCTCCATCTCTTATACCGACAATAGAAAGTGGC
CATTCCTCTGGTTACGACAGCCGTTCTGCACGGGCGTTTCCATATGGCAATGTTGCCTTTCCCC
ACCTTACCAGTTCCGCTCCCTCATGGCCTAGCCTTGTGGATACCACTAAGCAGTGGGACTATTA
TGCACGGAGAGAAAAAGATCGAGATCGAGACCGAGAGAGAGACCGAGACAGAGAAAGGGAGAGA
GACCGGGACAGAGAAAGGGAGCGCACCCGGGAGCGAGAGCGGGAGCGGGACCACAGCCCCACCC
CAAGTGTTTTCAACAGTGATGAAGAGCGATACAGATACAGGGAGTATGCAGAGAGAGGCTATGA
GCGCCACAGAGCTAGTCGGGAGAAAGAAGAGCGGCACAGAGAACGACGGCACAGAGAGAAGGAG
GAAACAAGACACAAGTCCTCTCGCAGTAATAGTAGACGTCGTCATGAAAGTGAAGAAGGGGACA
GTCACAGAAGACACAAGCACAAAAAGTCTAAAAGGAGCAAAGAAGGAAAAGAGGCTGGCAGCGA
GCCGGTCCCTGAGCAGGAGAGCACGGAAGCTGCCCCTGCCGAGTAGGCGCCACCTCTTATGTAC
GTCAGCCCCAGAAATAGATGCTATAAATCTCCTTATTTTTCTGGATAATGTTTAAGAAATGTAC
CTTTAATCTTGTTCTGTTAGAATGAAACGTTAACTTTTTCTTTTCCAAAATAAAAGTGTGCATT
TTTTTGTGTTAAGTTAAAAA

hide sequence

RefSeq Acc Id:

XM_006250884 ⟹ XP_006250946

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,617,727 - 33,675,734 (-)	NCBI
Rnor_6.0	14	36,150,427 - 36,208,390 (-)	NCBI
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI

Sequence:

show sequence

GCGAATCCACCTAGAGACGCCGCGCCGCTTGGATACTGCTGCGCATGCGCAGGCGGACCAGTTG
CTGAATATTCACGGTCGCCGCCTCCGCCGAGGTCGACCCTGGATTTGAGTCTCGCGCTCTCTTC
GTTCGCTTACCAGCGGGTTCCCTCCCCTTCTCGCGCCCTGAGACGGCGAGGCTGGGGAAGGGGT
TGAAAGGGGCTGTTGATCGTCGCCTTTAACTTGTTCGAGGGGCGGCCATGTCGGCCGGCGAGGT
GGAGCGTCTGGTGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGAGGAAGAGTGGCTGTATGGC
GGCCCGTGGGACGTGCATGTGCACAGTGATTTGGCAAAGGATCTAGATGAAAATGAAGTTGAAA
GGCCAGAAGAAGAAAATGCCAGTGCTAATCCTCCTTCTGGAATTGAAGAGGAAGCTGCTGAAAA
TGGCGTGGCGAAACCGAAAGTGACCGAGACTGAAGACGACAGTGATAGTGACAGTGACGATGAT
GAAGATGACGTTCACGTTACTATTGGAGACATCAAAACGGGAGCTCCACAGTATGGGAGTTATG
GAACAGCACCAGTAAATCTTAATATCAAGGCAGGGGGAAGAGTTTATGGAAATACAGGAACCAA
AGTCAAAGGAGTAGACCTCGATGCCCCTGGCAGCATTAATGGAGTTCCACTCTTGGAAGTAGAT
TTGGATTCTTTTGAAGATAAACCATGGCGGAAACCTGGTGCTGATCTTTCCGATTATTTTAATT
ATGGCTTTAATGAAGATACTTGGAAAGCTTACTGTGAAAAACAAAAGAGGATCCGAATGGGACT
GGAAGTTATACCCGTTACTTCAACGACAAACAAGATTACGGTACAGCAAGGGAGAACTGGAAAT
TCAGAGAAAGAAGCAGCACTTCCATCTACAAAAGCTGAGTTTACTTCTCCGCCATCATTGTTCA
AGACTGGTCTGCCACCAAGCAGAAACAGCACCTCTTCTCAGTCTCAGACAAGTACTGCCTCCAG
AAAAGCCAGTTCAAGCGTTGGGAAGTGGCAGGATCGATATGGGAGGGCCGAGTCACCTGATCTA
AGGAGATTACCTGGAGCAATCGATGTCATTGGTCAAACAATAACCATCAGCCGAGTAGAAGGAA
GACGGCGTGCAAATGAGAACAGCAATATACAGGTTCTTTCTGACAGATCTGCCACTGAAGTAGA
CAACAATTTCAGCAAACCACCTCCATTTTTCCCTCCAGGGGCTCCTCCTACTCACCTTCCTCCT
CCTCCATTTCTTCCACCTCCTCCAACTGTCAGCACTGCTCCACCTTTGATTCCACCACCAGGTA
TTCCAATAACTGTACCACCTCCAGGTTTCCCCCCTCCACCAGGCGCTCCACCTCCATCTCTTAT
ACCGACAATAGAAAGTGGCCATTCCTCTGGTTACGACAGCCGTTCTGCACGGGCGTTTCCATAT
GGCAATGTTGCCTTTCCCCACCTTACCAGTTCCGCTCCCTCATGGCCTAGCCTTGTGGATACCA
CTAAGCAGTGGGACTATTATGCACGGAGAGAAAAAGATCGAGATCGAGACCGAGAGAGAGACCG
AGACAGAGAAAGGGAGAGAGACCGGGACAGAGAAAGGGAGCGCACCCGGGAGCGAGAGCGGGAG
CGGGACCACAGCCCCACCCCAAGTGTTTTCAACAGTGATGAAGAGCGATACAGATACAGGGAGT
ATGCAGAGAGAGGCTATGAGCGCCACAGAGCTAGTCGGGAGAAAGAAGAGCGGCACAGAGAACG
ACGGCACAGAGAGAAGGAGGAAACAAGACACAAGTCCTCTCGCAGTAATAGTAGACGTCGTCAT
GAAAGTGAAGAAGGGGACAGTCACAGAAGACACAAGCACAAAAAGTCTAAAAGGAGCAAAGAAG
GAAAAGAGGCTGGCAGCGAGCCGGTCCCTGAGCAGGAGAGCACGGAAGCTGCCCCTGCCGAGTA
GGCGCCACCTCTTATGTACGTCAGCCCCAGAAATAGATGCTATAAATCTCCTTATTTTTCTGGA
TAATGTTTAAGAAATGTACCTTTAATCTTGTTCTGTTAGAATGAAACGTTAACTTTTTCTTTTC
CAAAATAAAAGTGTGCATTTTTTTGTGTTAAGTTAAAAA

hide sequence

RefSeq Acc Id:

XM_006250885 ⟹ XP_006250947

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,617,727 - 33,675,735 (-)	NCBI
Rnor_6.0	14	36,150,427 - 36,208,390 (-)	NCBI
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI

Sequence:

show sequence

GCGAATCCACCTAGAGACGCCGCGCCGCTTGGATACTGCTGCGCATGCGCAGGCGGACCAGTTG
CTGAATATTCACGGTCGCCGCCTCCGCCGAGGTCGACCCTGGATTTGAGTCTCGCGCTCTCTTC
GTTCGCTTACCAGCGGGTTCCCTCCCCTTCTCGCGCCCTGAGACGGCGAGGCTGGGGAAGGGGT
TGAAAGGGGCTGTTGATCGTCGCCTTTAACTTGTTCGAGGGGCGGCCATGTCGGCCGGCGAGGT
GGAGCGTCTGGTGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGAGGAAGAGTGGCTGTATGGC
GGCCCGTGGGACGTGCATGTGCACAGTGATTTGGCAAAGGATCTAGATGAAAATGAAGTTGAAA
GGCCAGAAGAAGAAAATGCCAGTGCTAATCCTCCTTCTGGAATTGAAGAGGAAGCTGCTGAAAA
TGGCGTGGCGAAACCGAAAGTGACCGAGACTGAAGACGACAGTGATAGTGACAGTGACGATGAT
GAAGATGACGTTCACGTTACTATTGGAGACATCAAAACGGGAGCTCCACAGTATGGGAGTTATG
GAACAGCACCAGTAAATCTTAATATCAAGGCAGGGGGAAGAGTTTATGGAAATACAGGAACCAA
AGTCAAAGGAGTAGACCTCGATGCCCCTGGCAGCATTAATGGAGTTCCACTCTTGGAAGTAGAT
TTGGATTCTTTTGAAGATAAACCATGGCGGAAACCTGGTGCTGATCTTTCCGATTATTTTAATT
ATGGCTTTAATGAAGATACTTGGAAAGCTTACTGTGAAAAACAAAAGAGGATCCGAATGGGACT
GGAAGTTATACCCGTTACTTCAACGACAAACAAGATTACGGCCGAAGACTGTACTATGGAAGTC
ACACCAGGTGCAGAGATCCAAGATGGCAGATTCAATCTTTTTAAGGTACAGCAAGGGAGAACTG
GAAATTCAGAGAAAGAAGCAGCACTTCCATCTACAAAAGCTGAGTTTACTTCTCCGCCATCATT
GTTCAAGACTGGTCTGCCACCAAGCAGGAGATTACCTGGAGCAATCGATGTCATTGGTCAAACA
ATAACCATCAGCCGAGTAGAAGGAAGACGGCGTGCAAATGAGAACAGCAATATACAGGTTCTTT
CTGACAGATCTGCCACTGAAGTAGACAACAATTTCAGCAAACCACCTCCATTTTTCCCTCCAGG
GGCTCCTCCTACTCACCTTCCTCCTCCTCCATTTCTTCCACCTCCTCCAACTGTCAGCACTGCT
CCACCTTTGATTCCACCACCAGGTATTCCAATAACTGTACCACCTCCAGGTTTCCCCCCTCCAC
CAGGCGCTCCACCTCCATCTCTTATACCGACAATAGAAAGTGGCCATTCCTCTGGTTACGACAG
CCGTTCTGCACGGGCGTTTCCATATGGCAATGTTGCCTTTCCCCACCTTACCAGTTCCGCTCCC
TCATGGCCTAGCCTTGTGGATACCACTAAGCAGTGGGACTATTATGCACGGAGAGAAAAAGATC
GAGATCGAGACCGAGAGAGAGACCGAGACAGAGAAAGGGAGAGAGACCGGGACAGAGAAAGGGA
GCGCACCCGGGAGCGAGAGCGGGAGCGGGACCACAGCCCCACCCCAAGTGTTTTCAACAGTGAT
GAAGAGCGATACAGATACAGGGAGTATGCAGAGAGAGGCTATGAGCGCCACAGAGCTAGTCGGG
AGAAAGAAGAGCGGCACAGAGAACGACGGCACAGAGAGAAGGAGGAAACAAGACACAAGTCCTC
TCGCAGTAATAGTAGACGTCGTCATGAAAGTGAAGAAGGGGACAGTCACAGAAGACACAAGCAC
AAAAAGTCTAAAAGGAGCAAAGAAGGAAAAGAGGCTGGCAGCGAGCCGGTCCCTGAGCAGGAGA
GCACGGAAGCTGCCCCTGCCGAGTAGGCGCCACCTCTTATGTACGTCAGCCCCAGAAATAGATG
CTATAAATCTCCTTATTTTTCTGGATAATGTTTAAGAAATGTACCTTTAATCTTGTTCTGTTAG
AATGAAACGTTAACTTTTTCTTTTCCAAAATAAAAGTGTGCATTTTTTTGTGTTAAGTTAAAAA

hide sequence

RefSeq Acc Id:

XM_006250886 ⟹ XP_006250948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,615,210 - 33,675,740 (-)	NCBI
Rnor_6.0	14	36,150,381 - 36,208,395 (-)	NCBI
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI

Sequence:

show sequence

CGGAAGCGAATCCACCTAGAGACGCCGCGCCGCTTGGATACTGCTGCGCATGCGCAGGCGGACC
AGTTGCTGAATATTCACGGTCGCCGCCTCCGCCGAGGTCGACCCTGGATTTGAGTCTCGCGCTC
TCTTCGTTCGCTTACCAGCGGGTTCCCTCCCCTTCTCGCGCCCTGAGACGGCGAGGCTGGGGAA
GGGGTTGAAAGGGGCTGTTGATCGTCGCCTTTAACTTGTTCGAGGGGCGGCCATGTCGGCCGGC
GAGGTGGAGCGTCTGGTGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGAGGAAGAGTGGCTGT
ATGGCGGCCCGTGGGACGTGCATGTGCACAGTGATTTGGCAAAGGATCTAGATGAAAATGAAGT
TGAAAGGCCAGAAGAAGAAAATGCCAGTGCTAATCCTCCTTCTGGAATTGAAGAGGAAGCTGCT
GAAAATGGCGTGGCGAAACCGAAAGTGACCGAGACTGAAGACGACAGTGATAGTGACAGTGACG
ATGATGAAGATGACGTTCACGTTACTATTGGAGACATCAAAACGGGAGCTCCACAGTATGGGAG
TTATGGAACAGCACCAGTAAATCTTAATATCAAGGCAGGGGGAAGAGTTTATGGAAATACAGGA
ACCAAAGTCAAAGGAGTAGACCTCGATGCCCCTGGCAGCATTAATGGAGTTCCACTCTTGGAAG
TAGATTTGGATTCTTTTGAAGATAAACCATGGCGGAAACCTGGTGCTGATCTTTCCGATTATTT
TAATTATGGCTTTAATGAAGATACTTGGAAAGCTTACTGTGAAAAACAAAAGAGGATCCGAATG
GGACTGGAAGTTATACCCGTTACTTCAACGACAAACAAGATTACGGCCGAAGACTGTACTATGG
AAGTCACACCAGGTGCAGAGATCCAAGATGGCAGATTCAATCTTTTTAAGGTACAGCAAGGGAG
AACTGGAAATTCAGAGAAAGAAGCAGCACTTCCATCTACAAAAGCTGAGTTTACTTCTCCGCCA
TCATTGTTCAAGACTGGTCTGCCACCAAGCAGAAACAGCACCTCTTCTCAGTCTCAGACAAGTA
CTGCCTCCAGAAAAGCCAGTTCAAGCGTTGGGAAGTGGCAGGATCGATATGGGAGGGCCGAGTC
ACCTGATCTAAGGAGATTACCTGGAGCAATCGATGTCATTGGTCAAACAATAACCATCAGCCGA
GTAGAAGGAAGACGGCGTGCAAATGAGAACAGCAATATACAGGTTCTTTCTGACAGATCTGCCA
CTGAAGTAGACAACAATTTCAGCAAACCACCTCCATTTTTCCCTCCAGGGGCTCCTCCTACTCA
CCTTCCTCCTCCTCCATTTCTTCCACCTCCTCCAACTGTCAGCACTGCTCCACCTTTGATTCCA
CCACCAGGTATTCCAATAACTGTACCACCTCCAGGTTTCCCCCCTCCACCAGGCGCTCCACCTC
CATCTCTTATACCGACAATAGAAAGTGGCCATTCCTCTGGTTACGACAGCCGTTCTGCACGGGC
GTTTCCATATGGCAATGTGATGAAGAGCGATACAGATACAGGGAGTATGCAGAGAGAGGCTATG
AGCGCCACAGAGCTAGTCGGGAGAAAGAAGAGCGGCACAGAGAACGACGGCACAGAGAGAAGGA
GGAAACAAGACACAAGTCCTCTCGCAGTAATAGTAGACGTCGTCATGAAAGTGAAGAAGGGGAC
AGTCACAGAAGACACAAGCACAAAAAGTCTAAAAGGAGCAAAGAAGGAAAAGAGGCTGGCAGCG
AGCCGGTCCCTGAGCAGGAGAGCACGGAAGCTGCCCCTGCCGAGTAGGCGCCACCTCTTATGTA
CGTCAGCCCCAGAAATAGATGCTATAAATCTCCTTATTTTTCTGGATAATGTTTAAGAAATGTA
CCTTTAATCTTGTTCTGTTAGAATGAAACGTTAACTTTTTCTTTTCCAAAATAAAAGTGTGCAT
TTTTTTGTGTTAAGTTAAAAATCTTTGTCTTGTAATATTTAAAGAATAAAAGACAAAAATTACT
TTA

hide sequence

RefSeq Acc Id:

XM_006250887 ⟹ XP_006250949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,617,727 - 33,675,733 (-)	NCBI
Rnor_6.0	14	36,150,427 - 36,208,388 (-)	NCBI
Rnor_5.0	14	35,974,199 - 36,034,742 (-)	NCBI

Sequence:

show sequence

GAATCCACCTAGAGACGCCGCGCCGCTTGGATACTGCTGCGCATGCGCAGGCGGACCAGTTGCT
GAATATTCACGGTCGCCGCCTCCGCCGAGGTCGACCCTGGATTTGAGTCTCGCGCTCTCTTCGT
TCGCTTACCAGCGGGTTCCCTCCCCTTCTCGCGCCCTGAGACGGCGAGGCTGGGGAAGGGGTTG
AAAGGGGCTGTTGATCGTCGCCTTTAACTTGTTCGAGGGGCGGCCATGTCGGCCGGCGAGGTGG
AGCGTCTGGTGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGAGGAAGAGTGGCTGTATGGCGG
CCCGTGGGACGTGCATGTGCACAGTGATTTGGCAAAGGATCTAGATGAAAATGAAGTTGAAAGG
CCAGAAGAAGAAAATGCCAGTGCTAATCCTCCTTCTGGAATTGAAGAGGAAGCTGCTGAAAATG
GCGTGGCGAAACCGAAAGTGACCGAGACTGAAGACGACAGTGATAGTGACAGTGACGATGATGA
AGATGACGTTCACGTTACTATTGGAGACATCAAAACGGGAGCTCCACAGTATGGGAGTTATGGA
ACAGCACCAGTAAATCTTAATATCAAGGCAGGGGGAAGAGTTTATGGAAATACAGGAACCAAAG
TCAAAGGAGTAGACCTCGATGCCCCTGGCAGCATTAATGGAGTTCCACTCTTGGAAGTAGATTT
GGATTCTTTTGAAGATAAACCATGGCGGAAACCTGGTGCTGATCTTTCCGATTATTTTAATTAT
GGCTTTAATGAAGATACTTGGAAAGCTTACTGTGAAAAACAAAAGAGGATCCGAATGGGACTGG
AAGTTATACCCGTTACTTCAACGACAAACAAGATTACGGTACAGCAAGGGAGAACTGGAAATTC
AGAGAAAGAAGCAGCACTTCCATCTACAAAAGCTGAGTTTACTTCTCCGCCATCATTGTTCAAG
ACTGGTCTGCCACCAAGCAGGAGATTACCTGGAGCAATCGATGTCATTGGTCAAACAATAACCA
TCAGCCGAGTAGAAGGAAGACGGCGTGCAAATGAGAACAGCAATATACAGGTTCTTTCTGACAG
ATCTGCCACTGAAGTAGACAACAATTTCAGCAAACCACCTCCATTTTTCCCTCCAGGGGCTCCT
CCTACTCACCTTCCTCCTCCTCCATTTCTTCCACCTCCTCCAACTGTCAGCACTGCTCCACCTT
TGATTCCACCACCAGGTATTCCAATAACTGTACCACCTCCAGGTTTCCCCCCTCCACCAGGCGC
TCCACCTCCATCTCTTATACCGACAATAGAAAGTGGCCATTCCTCTGGTTACGACAGCCGTTCT
GCACGGGCGTTTCCATATGGCAATGTTGCCTTTCCCCACCTTACCAGTTCCGCTCCCTCATGGC
CTAGCCTTGTGGATACCACTAAGCAGTGGGACTATTATGCACGGAGAGAAAAAGATCGAGATCG
AGACCGAGAGAGAGACCGAGACAGAGAAAGGGAGAGAGACCGGGACAGAGAAAGGGAGCGCACC
CGGGAGCGAGAGCGGGAGCGGGACCACAGCCCCACCCCAAGTGTTTTCAACAGTGATGAAGAGC
GATACAGATACAGGGAGTATGCAGAGAGAGGCTATGAGCGCCACAGAGCTAGTCGGGAGAAAGA
AGAGCGGCACAGAGAACGACGGCACAGAGAGAAGGAGGAAACAAGACACAAGTCCTCTCGCAGT
AATAGTAGACGTCGTCATGAAAGTGAAGAAGGGGACAGTCACAGAAGACACAAGCACAAAAAGT
CTAAAAGGAGCAAAGAAGGAAAAGAGGCTGGCAGCGAGCCGGTCCCTGAGCAGGAGAGCACGGA
AGCTGCCCCTGCCGAGTAGGCGCCACCTCTTATGTACGTCAGCCCCAGAAATAGATGCTATAAA
TCTCCTTATTTTTCTGGATAATGTTTAAGAAATGTACCTTTAATCTTGTTCTGTTAGAATGAAA
CGTTAACTTTTTCTTTTCCAAAATAAAAGTGTGCATTTTTTTGTGTTAAGTTAAAAA

hide sequence

RefSeq Acc Id:

XM_039091686 ⟹ XP_038947614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,617,727 - 33,675,735 (-)	NCBI

RefSeq Acc Id:

XM_039091687 ⟹ XP_038947615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,617,727 - 33,675,736 (-)	NCBI

RefSeq Acc Id:

XM_039091688 ⟹ XP_038947616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,615,210 - 33,675,742 (-)	NCBI

RefSeq Acc Id:

XM_039091689 ⟹ XP_038947617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI
mRatBN7.2	14	33,617,727 - 33,675,736 (-)	NCBI

RefSeq Acc Id:

XM_063272906 ⟹ XP_063128976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI

RefSeq Acc Id:

XM_063272907 ⟹ XP_063128977

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI

RefSeq Acc Id:

XM_063272908 ⟹ XP_063128978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI

RefSeq Acc Id:

XM_063272909 ⟹ XP_063128979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	33,969,341 - 34,030,871 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008296	(Get FASTA)	NCBI Sequence Viewer
	XP_006250944	(Get FASTA)	NCBI Sequence Viewer
	XP_006250945	(Get FASTA)	NCBI Sequence Viewer
	XP_006250946	(Get FASTA)	NCBI Sequence Viewer
	XP_006250947	(Get FASTA)	NCBI Sequence Viewer
	XP_006250948	(Get FASTA)	NCBI Sequence Viewer
	XP_006250949	(Get FASTA)	NCBI Sequence Viewer
	XP_038947614	(Get FASTA)	NCBI Sequence Viewer
	XP_038947615	(Get FASTA)	NCBI Sequence Viewer
	XP_038947616	(Get FASTA)	NCBI Sequence Viewer
	XP_038947617	(Get FASTA)	NCBI Sequence Viewer
	XP_063128976	(Get FASTA)	NCBI Sequence Viewer
	XP_063128977	(Get FASTA)	NCBI Sequence Viewer
	XP_063128978	(Get FASTA)	NCBI Sequence Viewer
	XP_063128979	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85767	(Get FASTA)	NCBI Sequence Viewer
	ABW86846	(Get FASTA)	NCBI Sequence Viewer
	EDL89938	(Get FASTA)	NCBI Sequence Viewer
	EDL89939	(Get FASTA)	NCBI Sequence Viewer
	EDL89940	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000049728
	ENSRNOP00000049728.3
	ENSRNOP00000072529
	ENSRNOP00000072529.1
	ENSRNOP00000082160
	ENSRNOP00000082160.1
	ENSRNOP00000083703
	ENSRNOP00000083703.1
	ENSRNOP00000088121
	ENSRNOP00000088121.1
GenBank Protein	Q5U317	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001008296 ⟸ NM_001008295

- UniProtKB:

Q5U317 (UniProtKB/Swiss-Prot), B6RIU0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIE
EEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVY
GNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
RIRMGLEVIPVTSTTNKITVQQGRTGNSEKEAALPSTKAEFTSPPSLFKTGLPPSRRLPGAIDV
IGQTITISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPT
VSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLTSSAPSWPSL
VDTTKQWDYYARREKDRDRDRERDRDRERERDRDRERERTRERERERDHSPTPSVFNSDEERYR
YREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKR
SKEGKEAGSEPVPEQESTEAAPAE

hide sequence

RefSeq Acc Id:

XP_006250948 ⟸ XM_006250886

- Peptide Label:

isoform X7

- Sequence:

show sequence

MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIE
EEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVY
GNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
RIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKEAALPSTKAEF
TSPPSLFKTGLPPSRNSTSSQSQTSTASRKASSSVGKWQDRYGRAESPDLRRLPGAIDVIGQTI
TISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAP
PLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVMKSDTDTGSMQ
REAMSATELVGRKKSGTENDGTERRRKQDTSPLAVIVDVVMKVKKGTVTEDTSTKSLKGAKKEK
RLAASRSLSRRARKLPLPSRRHLLCTSAPEIDAINLLIFLDNV

hide sequence

RefSeq Acc Id:

XP_006250945 ⟸ XM_006250883

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIE
EEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVY
GNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
RIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKEAALPSTKAEF
TSPPSLFKTGLPPSRNSTSSQSQTSTASRKASSSVGKWQDRYGRAESPDLRRLPGAIDVIGQTI
TISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAP
PLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLTSSAPSWPSLVDTTK
QWDYYARREKDRDRDRERDRDRERERDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYA
ERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGK
EAGSEPVPEQESTEAAPAE

hide sequence

RefSeq Acc Id:	XP_006250944 ⟸ XM_006250882
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A5J2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIE EEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVY GNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK RIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKEAALPSTKAEF TSPPSLFKTGLPPSRNSTSSQSQTSTASRKASSSVGKWQDRYGRAESPDLRRLPGAIDVIGQTI TISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAP PLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLTSSAPS WPSLVDTTKQWDYYARREKDRDRDRERDRDRERERDRDRERERTRERERERDHSPTPSVFNSDE ERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHK KSKRSKEGKEAGSEPVPEQESTEAAPAE hide sequence

RefSeq Acc Id:	XP_006250946 ⟸ XM_006250884
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K376 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIE EEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVY GNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK RIRMGLEVIPVTSTTNKITVQQGRTGNSEKEAALPSTKAEFTSPPSLFKTGLPPSRNSTSSQSQ TSTASRKASSSVGKWQDRYGRAESPDLRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSDR SATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGA PPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLTSSAPSWPSLVDTTKQWDYYARREKDRDR DRERDRDRERERDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKE ERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPVPEQESTE AAPAE hide sequence

RefSeq Acc Id:	XP_006250947 ⟸ XM_006250885
- Peptide Label:	isoform X5
- UniProtKB:	A0A8L2QNW1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIE EEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVY GNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK RIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKEAALPSTKAEF TSPPSLFKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPP PFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGH SSGYDSRSARAFPYGNVAFPHLTSSAPSWPSLVDTTKQWDYYARREKDRDRDRERDRDRERERD RDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEE TRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPVPEQESTEAAPAE hide sequence

RefSeq Acc Id:

XP_006250949 ⟸ XM_006250887

- Peptide Label:

isoform X9

- Sequence:

show sequence

MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIE
EEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVY
GNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
RIRMGLEVIPVTSTTNKITVQQGRTGNSEKEAALPSTKAEFTSPPSLFKTGLPPSRRLPGAIDV
IGQTITISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPT
VSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLT
SSAPSWPSLVDTTKQWDYYARREKDRDRDRERDRDRERERDRDRERERTRERERERDHSPTPSV
FNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHR
RHKHKKSKRSKEGKEAGSEPVPEQESTEAAPAE

hide sequence

RefSeq Acc Id:

ENSRNOP00000049728 ⟸ ENSRNOT00000045050

RefSeq Acc Id:

ENSRNOP00000072529 ⟸ ENSRNOT00000088448

RefSeq Acc Id:	XP_038947616 ⟸ XM_039091688
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038947617 ⟸ XM_039091689
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038947615 ⟸ XM_039091687
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038947614 ⟸ XM_039091686
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZW26 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000082160 ⟸ ENSRNOT00000098461

RefSeq Acc Id:

ENSRNOP00000083703 ⟸ ENSRNOT00000113872

RefSeq Acc Id:

ENSRNOP00000088121 ⟸ ENSRNOT00000119524

RefSeq Acc Id:	XP_063128977 ⟸ XM_063272907
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063128979 ⟸ XM_063272909
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063128976 ⟸ XM_063272906
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I5ZXH8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128978 ⟸ XM_063272908
- Peptide Label:	isoform X13

Protein Domains

Pre-mRNA polyadenylation factor Fip1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U317-F1-model_v2	AlphaFold	Q5U317	1-536	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699285

Promoter ID:

EPDNEW_R9810

Type:

initiation region

Name:

Fip1l1_1

Description:

factor interacting with PAPOLA and CPSF1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	36,208,320 - 36,208,380	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309336	AgrOrtholog
BioCyc Gene	G2FUF-15916	BioCyc
Ensembl Genes	ENSRNOG00000002275	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045050.3	UniProtKB/TrEMBL
	ENSRNOT00000088448.2	UniProtKB/TrEMBL
	ENSRNOT00000098461.1	UniProtKB/TrEMBL
	ENSRNOT00000113872.1	UniProtKB/TrEMBL
	ENSRNOT00000119524.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7192362	IMAGE-MGC_LOAD
InterPro	Fip1_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:289582	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93674	IMAGE-MGC_LOAD
NCBI Gene	289582	ENTREZGENE
PANTHER	FIP1-LIKE 1 PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PRE-MRNA 3'-END-PROCESSING FACTOR FIP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Fip1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Fip1l1	PhenoGen
RatGTEx	ENSRNOG00000002275	RatGTEx
UniProt	A0A0G2K376	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZW26	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZXH8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A5J2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QNW1	ENTREZGENE, UniProtKB/TrEMBL
	A6JD16_RAT	UniProtKB/TrEMBL
	A6JD17_RAT	UniProtKB/TrEMBL
	A6JD18_RAT	UniProtKB/TrEMBL
	B6RIU0	ENTREZGENE, UniProtKB/TrEMBL
	FIP1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-07-09	Fip1l1	factor interacting with PAPOLA and CPSF1	Fip1l1	FIP1 like 1 (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Fip1l1	FIP1 like 1 (S. cerevisiae)	Fip1l1_predicted	FIP1 like 1 (S. cerevisiae) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Fip1l1_predicted	FIP1 like 1 (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)