Cpne4 (copine 4) - Rat Genome Database

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Gene: Cpne4 (copine 4) Rattus norvegicus
Analyze
Symbol: Cpne4
Name: copine 4
RGD ID: 1308844
Description: Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE4 (copine 4); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: copine IV; copine-4; LOC367160
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,056,152 - 114,531,855 (+)NCBIGRCr8
mRatBN7.28105,177,376 - 105,653,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8110,825,452 - 111,296,952 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,024,637 - 109,496,208 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,867,355 - 107,338,883 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,105,814 - 113,586,429 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,105,814 - 113,586,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08112,491,426 - 112,972,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48109,627,862 - 110,112,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18109,783,095 - 110,130,738 (+)NCBI
Celera8104,538,791 - 105,009,664 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23533145   PMID:36307995  


Genomics

Comparative Map Data
Cpne4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,056,152 - 114,531,855 (+)NCBIGRCr8
mRatBN7.28105,177,376 - 105,653,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8110,825,452 - 111,296,952 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,024,637 - 109,496,208 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,867,355 - 107,338,883 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,105,814 - 113,586,429 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,105,814 - 113,586,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08112,491,426 - 112,972,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48109,627,862 - 110,112,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18109,783,095 - 110,130,738 (+)NCBI
Celera8104,538,791 - 105,009,664 (+)NCBICelera
Cytogenetic Map8q32NCBI
CPNE4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,533,569 - 132,039,606 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,533,555 - 132,285,410 (-)EnsemblGRCh38hg38GRCh38
GRCh373131,252,413 - 131,758,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,736,262 - 133,236,534 (-)NCBINCBI36Build 36hg18NCBI36
Build 343132,736,276 - 133,236,542NCBI
Celera3129,679,587 - 130,180,523 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,638,347 - 129,138,815 (-)NCBIHuRef
CHM1_13131,216,983 - 131,716,871 (-)NCBICHM1_1
T2T-CHM13v2.03134,277,285 - 134,784,042 (-)NCBIT2T-CHM13v2.0
Cpne4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399104,443,900 - 104,911,747 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9104,424,485 - 104,911,743 (+)EnsemblGRCm39 Ensembl
GRCm389104,566,701 - 105,034,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9104,547,286 - 105,034,544 (+)EnsemblGRCm38mm10GRCm38
MGSCv379104,472,118 - 104,936,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369104,427,888 - 104,892,644 (+)NCBIMGSCv36mm8
Celera9104,134,331 - 104,618,066 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Cpne4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555016,493,225 - 6,941,914 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555016,473,669 - 6,941,617 (+)NCBIChiLan1.0ChiLan1.0
CPNE4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22129,492,400 - 130,238,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13129,497,127 - 130,243,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03128,615,410 - 129,096,612 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13135,937,563 - 136,438,885 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,936,137 - 136,436,888 (-)Ensemblpanpan1.1panPan2
CPNE4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,621,511 - 29,077,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,622,845 - 29,077,642 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,596,461 - 29,052,657 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02329,129,540 - 29,591,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2329,129,545 - 29,591,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12328,828,685 - 29,157,354 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02328,886,402 - 29,341,755 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02329,135,984 - 29,465,001 (-)NCBIUU_Cfam_GSD_1.0
Cpne4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560268,183,810 - 68,644,919 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365294,944,915 - 5,386,249 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPNE4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13367,651 - 963,773 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113367,801 - 963,775 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213566,282 - 742,613 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPNE4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11558,199,223 - 58,703,663 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604131,199,582 - 31,710,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpne4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247307,548,099 - 7,944,326 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247307,546,501 - 8,079,183 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cpne4
3850 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:399
Count of miRNA genes:218
Interacting mature miRNAs:253
Transcripts:ENSRNOT00000016749
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat

Markers in Region
D8Mgh2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,647,037 - 105,647,297 (+)MAPPERmRatBN7.2
Rnor_6.08113,580,387 - 113,580,646NCBIRnor6.0
Rnor_5.08112,967,014 - 112,967,273UniSTSRnor5.0
RGSC_v3.48110,106,272 - 110,106,532RGDRGSC3.4
RGSC_v3.48110,106,273 - 110,106,532UniSTSRGSC3.4
RGSC_v3.18110,125,728 - 110,125,987RGD
Celera8105,003,685 - 105,003,944UniSTS
RH 3.4 Map81152.4UniSTS
RH 3.4 Map81152.4RGD
RH 2.0 Map8875.2RGD
Cytogenetic Map8q32UniSTS
D8Mgh11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,647,049 - 105,647,213 (+)MAPPERmRatBN7.2
Rnor_6.08113,580,399 - 113,580,562NCBIRnor6.0
Rnor_5.08112,967,026 - 112,967,189UniSTSRnor5.0
RGSC_v3.48110,106,284 - 110,106,448RGDRGSC3.4
RGSC_v3.48110,106,285 - 110,106,448UniSTSRGSC3.4
RGSC_v3.18110,125,739 - 110,125,903RGD
Celera8105,003,697 - 105,003,860UniSTS
RH 3.4 Map81145.3UniSTS
RH 3.4 Map81145.3RGD
RH 2.0 Map8871.2RGD
Cytogenetic Map8q32UniSTS
D8Rat65  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,406,630 - 105,406,857 (+)MAPPERmRatBN7.2
Rnor_6.08113,334,360 - 113,334,638NCBIRnor6.0
Rnor_5.08112,719,810 - 112,720,088UniSTSRnor5.0
RGSC_v3.48109,862,358 - 109,862,585RGDRGSC3.4
RGSC_v3.48109,862,359 - 109,862,585UniSTSRGSC3.4
RGSC_v3.18109,881,814 - 109,882,040RGD
Celera8104,766,660 - 104,766,889UniSTS
RH 3.4 Map81148.7RGD
RH 3.4 Map81148.7UniSTS
RH 2.0 Map8870.0RGD
SHRSP x BN Map866.31RGD
Cytogenetic Map8q32UniSTS
D8Arb28  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,495,002 - 105,495,062 (+)MAPPERmRatBN7.2
Rnor_6.08113,418,665 - 113,418,724NCBIRnor6.0
Rnor_5.08112,806,121 - 112,806,180UniSTSRnor5.0
RGSC_v3.48109,954,771 - 109,954,831RGDRGSC3.4
RGSC_v3.48109,954,772 - 109,954,831UniSTSRGSC3.4
RGSC_v3.18109,974,226 - 109,974,286RGD
Celera8104,853,382 - 104,853,441UniSTS
RH 3.4 Map81152.3RGD
RH 3.4 Map81152.3UniSTS
RH 2.0 Map8877.0RGD
FHH x ACI Map876.84RGD
Cytogenetic Map8q32UniSTS
D8Got166  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,366,332 - 105,366,513 (+)MAPPERmRatBN7.2
Rnor_6.08113,293,546 - 113,293,724NCBIRnor6.0
Rnor_5.08112,678,828 - 112,679,006UniSTSRnor5.0
RGSC_v3.48109,818,023 - 109,818,202RGDRGSC3.4
RGSC_v3.48109,818,024 - 109,818,202UniSTSRGSC3.4
RGSC_v3.18109,837,479 - 109,837,657RGD
Celera8104,726,664 - 104,726,836UniSTS
RH 3.4 Map81153.4UniSTS
RH 3.4 Map81153.4RGD
RH 2.0 Map8871.8RGD
Cytogenetic Map8q32UniSTS
BF402747  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,652,539 - 105,652,730 (+)MAPPERmRatBN7.2
Rnor_6.08113,585,890 - 113,586,080NCBIRnor6.0
Rnor_5.08112,972,063 - 112,972,253UniSTSRnor5.0
RGSC_v3.48110,112,407 - 110,112,597UniSTSRGSC3.4
Celera8105,009,136 - 105,009,326UniSTS
RH 3.4 Map81151.8UniSTS
Cytogenetic Map8q32UniSTS
AU048287  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,563,021 - 105,563,173 (+)MAPPERmRatBN7.2
Rnor_6.08113,496,186 - 113,496,337NCBIRnor6.0
Rnor_5.08112,882,828 - 112,882,979UniSTSRnor5.0
RGSC_v3.48110,022,228 - 110,022,379UniSTSRGSC3.4
Celera8104,919,724 - 104,919,869UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 37
Low 3 16 8 16 8 31 24 20 10
Below cutoff 24 13 5 3 5 6 6 6 11 18 1 6

Sequence


RefSeq Acc Id: ENSRNOT00000016749   ⟹   ENSRNOP00000016749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)Ensembl
Rnor_6.0 Ensembl8113,105,814 - 113,586,418 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099083   ⟹   ENSRNOP00000094413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8105,194,444 - 105,653,068 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102050   ⟹   ENSRNOP00000080435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8105,216,078 - 105,653,068 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113078   ⟹   ENSRNOP00000092538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)Ensembl
RefSeq Acc Id: NM_001109003   ⟹   NP_001102473
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,056,152 - 114,531,855 (+)NCBI
mRatBN7.28105,177,376 - 105,653,068 (+)NCBI
Rnor_6.08113,105,814 - 113,586,418 (+)NCBI
Rnor_5.08112,491,426 - 112,972,602 (+)NCBI
RGSC_v3.48109,627,862 - 110,112,935 (+)RGD
Celera8104,538,791 - 105,009,664 (+)RGD
Sequence:
RefSeq Acc Id: XM_017595789   ⟹   XP_017451278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,072,997 - 114,531,853 (+)NCBI
mRatBN7.28105,194,187 - 105,653,075 (+)NCBI
Rnor_6.08113,122,931 - 113,586,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595791   ⟹   XP_017451280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,075,959 - 114,531,853 (+)NCBI
mRatBN7.28105,197,185 - 105,652,807 (+)NCBI
Rnor_6.08113,125,765 - 113,586,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081885   ⟹   XP_038937813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,061,492 - 114,531,853 (+)NCBI
mRatBN7.28105,182,705 - 105,652,807 (+)NCBI
RefSeq Acc Id: XM_039081886   ⟹   XP_038937814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,063,260 - 114,531,853 (+)NCBI
mRatBN7.28105,184,413 - 105,652,807 (+)NCBI
RefSeq Acc Id: NP_001102473   ⟸   NM_001109003
- UniProtKB: F1M0Z3 (UniProtKB/TrEMBL),   A6I2M2 (UniProtKB/TrEMBL),   A0A8I6AVT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451278   ⟸   XM_017595789
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GKR1 (UniProtKB/TrEMBL),   A0A8I6AVT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451280   ⟸   XM_017595791
- Peptide Label: isoform X2
- UniProtKB: H1UBM8 (UniProtKB/TrEMBL),   A0A8I6AVT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016749   ⟸   ENSRNOT00000016749
RefSeq Acc Id: XP_038937813   ⟸   XM_039081885
- Peptide Label: isoform X2
- UniProtKB: H1UBM8 (UniProtKB/TrEMBL),   A0A8I6AVT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937814   ⟸   XM_039081886
- Peptide Label: isoform X2
- UniProtKB: H1UBM8 (UniProtKB/TrEMBL),   A0A8I6AVT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000092538   ⟸   ENSRNOT00000113078
RefSeq Acc Id: ENSRNOP00000080435   ⟸   ENSRNOT00000102050
RefSeq Acc Id: ENSRNOP00000094413   ⟸   ENSRNOT00000099083
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0Z3-F1-model_v2 AlphaFold F1M0Z3 1-567 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308844 AgrOrtholog
BioCyc Gene G2FUF-29281 BioCyc
Ensembl Genes ENSRNOG00000026577 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016749 ENTREZGENE
  ENSRNOT00000016749.7 UniProtKB/TrEMBL
  ENSRNOT00000099083.1 UniProtKB/TrEMBL
  ENSRNOT00000102050.1 UniProtKB/TrEMBL
  ENSRNOT00000113078.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2B_Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report rno:367160 UniProtKB/TrEMBL
NCBI Gene 367160 ENTREZGENE
PANTHER COPINE-4 UniProtKB/TrEMBL
  PTHR10857 UniProtKB/TrEMBL
Pfam Copine UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PhenoGen Cpne4 PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026577 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A8I5ZPL3_RAT UniProtKB/TrEMBL
  A0A8I6AVT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKR1 ENTREZGENE, UniProtKB/TrEMBL
  A6I2M2 ENTREZGENE, UniProtKB/TrEMBL
  F1M0Z3 ENTREZGENE, UniProtKB/TrEMBL
  H1UBM8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-03 Cpne4  copine 4  Cpne4  copine IV  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cpne4  copine IV   Cpne4_predicted  copine IV (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cpne4_predicted  copine IV (predicted)      Symbol and Name status set to approved 70820 APPROVED