Rbm26 (RNA binding motif protein 26) - Rat Genome Database

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Gene: Rbm26 (RNA binding motif protein 26) Rattus norvegicus
Analyze
Symbol: Rbm26
Name: RNA binding motif protein 26
RGD ID: 1308297
Description: Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be active in nucleus. Orthologous to human RBM26 (RNA binding motif protein 26); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306137; RGD1308297; RNA-binding protein 26; similar to CG10084-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81588,299,378 - 88,379,365 (-)NCBIGRCr8
mRatBN7.21581,884,783 - 81,964,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1581,887,219 - 81,964,118 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1585,879,855 - 85,950,880 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01587,006,454 - 87,077,671 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01583,930,401 - 84,001,430 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01589,262,683 - 89,339,323 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1589,266,710 - 89,339,323 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01592,753,570 - 92,831,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41589,173,025 - 89,246,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11589,187,355 - 89,260,660 (-)NCBI
Celera1581,013,870 - 81,085,087 (-)NCBICelera
Cytogenetic Map15q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19389623   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rbm26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81588,299,378 - 88,379,365 (-)NCBIGRCr8
mRatBN7.21581,884,783 - 81,964,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1581,887,219 - 81,964,118 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1585,879,855 - 85,950,880 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01587,006,454 - 87,077,671 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01583,930,401 - 84,001,430 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01589,262,683 - 89,339,323 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1589,266,710 - 89,339,323 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01592,753,570 - 92,831,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41589,173,025 - 89,246,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11589,187,355 - 89,260,660 (-)NCBI
Celera1581,013,870 - 81,085,087 (-)NCBICelera
Cytogenetic Map15q22NCBI
RBM26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381379,311,827 - 79,406,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1379,311,824 - 79,406,477 (-)EnsemblGRCh38hg38GRCh38
GRCh371379,893,003 - 79,980,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361378,792,090 - 78,877,924 (-)NCBINCBI36Build 36hg18NCBI36
Build 341378,792,099 - 78,877,924NCBI
Celera1360,793,978 - 60,881,186 (-)NCBICelera
Cytogenetic Map13q31.1NCBI
HuRef1360,597,273 - 60,682,935 (-)NCBIHuRef
CHM1_11379,861,881 - 79,947,419 (-)NCBICHM1_1
T2T-CHM13v2.01378,540,087 - 78,634,324 (-)NCBIT2T-CHM13v2.0
Rbm26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914105,344,187 - 105,418,475 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14105,344,187 - 105,414,763 (-)EnsemblGRCm39 Ensembl
GRCm3814105,106,751 - 105,181,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14105,106,751 - 105,177,327 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714105,513,736 - 105,576,544 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614104,001,814 - 104,062,943 (-)NCBIMGSCv36mm8
Celera14103,728,470 - 103,791,263 (-)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1455.36NCBI
Rbm26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540428,114,576 - 28,198,856 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540428,116,009 - 28,198,878 (+)NCBIChiLan1.0ChiLan1.0
RBM26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21480,895,279 - 80,994,511 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11379,489,594 - 79,588,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01360,547,197 - 60,642,551 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11379,576,833 - 79,671,485 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1379,585,632 - 79,670,999 (-)Ensemblpanpan1.1panPan2
RBM26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12232,579,401 - 32,664,370 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2232,581,825 - 32,664,714 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2232,379,448 - 32,465,565 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02232,904,179 - 32,990,299 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2232,907,038 - 32,990,285 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12232,563,823 - 32,649,925 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02232,608,075 - 32,694,183 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02232,675,519 - 32,761,678 (-)NCBIUU_Cfam_GSD_1.0
Rbm26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945126,759,165 - 126,835,670 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365112,175,374 - 2,249,195 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365112,175,192 - 2,252,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1151,339,629 - 51,420,512 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11151,337,388 - 51,421,746 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21156,088,993 - 56,173,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1358,366,214 - 58,457,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl358,371,352 - 58,457,535 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604614,612,415 - 14,707,042 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475121,028,021 - 21,119,329 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475121,027,984 - 21,122,153 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbm26
121 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:98
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000013255, ENSRNOT00000013297, ENSRNOT00000066433
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)157630609990088744Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat

Markers in Region
AU017719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21581,909,114 - 81,909,210 (+)MAPPERmRatBN7.2
Rnor_6.01589,284,330 - 89,284,425NCBIRnor6.0
Rnor_5.01592,776,881 - 92,776,976UniSTSRnor5.0
RGSC_v3.41589,188,143 - 89,188,238UniSTSRGSC3.4
Celera1581,029,920 - 81,030,015UniSTS
Cytogenetic Map15q22UniSTS
RH131185  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21581,894,075 - 81,894,265 (+)MAPPERmRatBN7.2
Rnor_6.01589,269,294 - 89,269,483NCBIRnor6.0
Rnor_5.01592,761,845 - 92,762,034UniSTSRnor5.0
RGSC_v3.41589,173,107 - 89,173,296UniSTSRGSC3.4
Celera1581,014,884 - 81,015,073UniSTS
RH 3.4 Map15549.0UniSTS
Cytogenetic Map15q22UniSTS
BE109259  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21581,914,005 - 81,914,166 (+)MAPPERmRatBN7.2
Rnor_6.01589,289,221 - 89,289,381NCBIRnor6.0
Rnor_5.01592,781,772 - 92,781,932UniSTSRnor5.0
RGSC_v3.41589,193,034 - 89,193,194UniSTSRGSC3.4
Celera1581,034,811 - 81,034,971UniSTS
Cytogenetic Map15q22UniSTS
MARC_16477-16478:1019839220:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21581,931,527 - 81,931,612 (+)MAPPERmRatBN7.2
mRatBN7.21581,931,527 - 81,932,211 (+)MAPPERmRatBN7.2
Rnor_6.01589,306,751 - 89,307,434NCBIRnor6.0
Rnor_6.01589,306,751 - 89,306,835NCBIRnor6.0
Rnor_5.01592,798,871 - 92,799,554UniSTSRnor5.0
Rnor_5.01592,798,871 - 92,798,955UniSTSRnor5.0
RGSC_v3.41589,210,876 - 89,210,960UniSTSRGSC3.4
RGSC_v3.41589,210,876 - 89,211,559UniSTSRGSC3.4
Celera1581,052,502 - 81,053,185UniSTS
Celera1581,052,502 - 81,052,586UniSTS
Cytogenetic Map15q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 50 34 19 34 8 8 74 34 41 11 8
Low 7 7 7 7 3 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_009612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC082039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN801746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013255   ⟹   ENSRNOP00000013255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1581,887,219 - 81,964,118 (-)Ensembl
Rnor_6.0 Ensembl1589,266,710 - 89,339,037 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000013297   ⟹   ENSRNOP00000013297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1581,893,062 - 81,964,118 (-)Ensembl
Rnor_6.0 Ensembl1589,268,280 - 89,339,323 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095729   ⟹   ENSRNOP00000077211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1581,893,998 - 81,964,118 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103445   ⟹   ENSRNOP00000089116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1581,893,998 - 81,964,118 (-)Ensembl
RefSeq Acc Id: NM_001277160   ⟹   NP_001264089
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,307,637 - 88,378,686 (-)NCBI
mRatBN7.21581,893,062 - 81,964,118 (-)NCBI
Rnor_6.01589,268,280 - 89,339,323 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Celera1581,013,870 - 81,085,087 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252425   ⟹   XP_006252487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,299,378 - 88,378,807 (-)NCBI
mRatBN7.21581,884,783 - 81,964,245 (-)NCBI
Rnor_6.01589,262,683 - 89,338,986 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093404   ⟹   XP_038949332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,307,049 - 88,379,365 (-)NCBI
mRatBN7.21581,892,060 - 81,964,244 (-)NCBI
RefSeq Acc Id: XM_063274336   ⟹   XP_063130406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,306,638 - 88,378,806 (-)NCBI
RefSeq Acc Id: XM_063274337   ⟹   XP_063130407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,299,378 - 88,378,806 (-)NCBI
RefSeq Acc Id: XM_063274338   ⟹   XP_063130408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,307,049 - 88,378,806 (-)NCBI
RefSeq Acc Id: XM_063274339   ⟹   XP_063130409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,299,378 - 88,378,806 (-)NCBI
RefSeq Acc Id: XM_063274340   ⟹   XP_063130410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,335,357 - 88,378,809 (-)NCBI
RefSeq Acc Id: XM_063274341   ⟹   XP_063130411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,335,272 - 88,378,807 (-)NCBI
RefSeq Acc Id: XR_010057829
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,302,367 - 88,378,807 (-)NCBI
RefSeq Acc Id: XR_010057830
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81588,335,289 - 88,378,809 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001264089   ⟸   NM_001277160
- UniProtKB: A0A8I5Y1B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252487   ⟸   XM_006252425
- Peptide Label: isoform X3
- UniProtKB: D3ZRG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013297   ⟸   ENSRNOT00000013297
RefSeq Acc Id: ENSRNOP00000013255   ⟸   ENSRNOT00000013255
RefSeq Acc Id: XP_038949332   ⟸   XM_039093404
- Peptide Label: isoform X1
- UniProtKB: D3ZRC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089116   ⟸   ENSRNOT00000103445
RefSeq Acc Id: ENSRNOP00000077211   ⟸   ENSRNOT00000095729
RefSeq Acc Id: XP_063130409   ⟸   XM_063274339
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063130407   ⟸   XM_063274337
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063130406   ⟸   XM_063274336
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063130408   ⟸   XM_063274338
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063130411   ⟸   XM_063274341
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063130410   ⟸   XM_063274340
- Peptide Label: isoform X7
Protein Domains
C3H1-type   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRG7-F1-model_v2 AlphaFold D3ZRG7 1-1007 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699866
Promoter ID:EPDNEW_R10389
Type:initiation region
Name:Rbm26_1
Description:RNA binding motif protein 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01589,339,410 - 89,339,470EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308297 AgrOrtholog
BioCyc Gene G2FUF-12630 BioCyc
Ensembl Genes ENSRNOG00000009836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013255.8 UniProtKB/TrEMBL
  ENSRNOT00000013297 ENTREZGENE
  ENSRNOT00000013297.8 UniProtKB/TrEMBL
  ENSRNOT00000095729.1 UniProtKB/TrEMBL
  ENSRNOT00000103445.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  PWI domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131439 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PWI UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM26-like_RRM2 UniProtKB/TrEMBL
  RBM26/27 UniProtKB/TrEMBL
  RBM26_RRM1 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
MGC_CLONE MGC:95182 IMAGE-MGC_LOAD
NCBI Gene RGD1308297 ENTREZGENE
PANTHER PTHR14398 UniProtKB/TrEMBL
  PTHR14398:SF2 UniProtKB/TrEMBL
Pfam PWI UniProtKB/TrEMBL
PhenoGen Rbm26 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009836 RatGTEx
SMART RRM UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I5Y1B1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB29_RAT UniProtKB/TrEMBL
  D3ZRC3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRG7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Rbm26  RNA binding motif protein 26  RGD1308297  similar to CG10084-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308297  similar to CG10084-PA  RGD1308297_predicted  similar to CG10084-PA (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308297_predicted  similar to CG10084-PA (predicted)  LOC306137_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306137_predicted  similar to CG10084-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL