Dnajb6 (DnaJ heat shock protein family (Hsp40) member B6) - Rat Genome Database

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Gene: Dnajb6 (DnaJ heat shock protein family (Hsp40) member B6) Rattus norvegicus
Analyze
Symbol: Dnajb6
Name: DnaJ heat shock protein family (Hsp40) member B6
RGD ID: 1308207
Description: Predicted to enable several functions, including ATPase activator activity; identical protein binding activity; and unfolded protein binding activity. Predicted to be involved in several processes, including chaperone-mediated protein folding; intermediate filament organization; and negative regulation of inclusion body assembly. Predicted to act upstream of or within several processes, including chorion development; labyrinthine layer development; and negative regulation of DNA-templated transcription. Predicted to be located in several cellular components, including Z disc; nucleoplasm; and perinuclear region of cytoplasm. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 1. Orthologous to human DNAJB6 (DnaJ heat shock protein family (Hsp40) member B6); INTERACTS WITH 2,4-dinitrotoluene; 3-chloropropane-1,2-diol; 3-methylcholanthrene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DnaJ (Hsp40) homolog, subfamily B, member 6; dnaJ homolog subfamily B member 6; heat shock protein J2; HSJ-2; hsp40 homolog; LOC108350642; LOC362293; MRJ; MSJ-1; uncharacterized LOC108350642
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Dnajb6-ps10  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr846,010,081 - 6,232,052 (-)NCBIGRCr8
mRatBN7.245,452,683 - 5,556,679 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl45,452,683 - 5,556,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx410,490,284 - 10,553,833 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.046,304,520 - 6,368,070 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.044,650,656 - 4,714,210 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.042,711,329 - 2,774,969 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl42,711,385 - 2,774,890 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.042,761,321 - 2,825,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44732,491 - 796,237 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14732,490 - 796,237 (-)NCBI
Celera44,760,011 - 4,823,483 (+)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
1H-pyrazole  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
7,12-dimethyltetraphene  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-naphthoflavone  (EXP)
alpha-pinene  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bezafibrate  (ISO)
bisphenol A  (EXP)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
captan  (ISO)
carbamazepine  (ISO)
chenodeoxycholic acid  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
deoxycholic acid  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenofibrate  (ISO)
fenthion  (ISO)
folic acid  (ISO)
folpet  (ISO)
gallic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
isobutanol  (ISO)
isoflavones  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
maneb  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
motexafin gadolinium  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
nonanoic acid  (ISO)
ochratoxin A  (EXP)
organoselenium compound  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
phlorizin  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
thioacetamide  (EXP)
toluene 2,4-diisocyanate  (ISO)
triphenyl phosphate  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10021343   PMID:10954706   PMID:11896048   PMID:16260608   PMID:18373498   PMID:19946888   PMID:20889486   PMID:21231916   PMID:21630459   PMID:21972064   PMID:22366786   PMID:26476842  
PMID:30053369   PMID:35352799  


Genomics

Comparative Map Data
Dnajb6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr846,010,081 - 6,232,052 (-)NCBIGRCr8
mRatBN7.245,452,683 - 5,556,679 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl45,452,683 - 5,556,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx410,490,284 - 10,553,833 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.046,304,520 - 6,368,070 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.044,650,656 - 4,714,210 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.042,711,329 - 2,774,969 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl42,711,385 - 2,774,890 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.042,761,321 - 2,825,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44732,491 - 796,237 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14732,490 - 796,237 (-)NCBI
Celera44,760,011 - 4,823,483 (+)NCBICelera
Cytogenetic Map4q11NCBI
DNAJB6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387157,337,004 - 157,417,439 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7157,335,381 - 157,417,439 (+)EnsemblGRCh38hg38GRCh38
GRCh377157,129,698 - 157,210,133 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367156,822,471 - 156,902,894 (+)NCBINCBI36Build 36hg18NCBI36
Build 347156,629,186 - 156,709,608NCBI
Celera7151,556,757 - 151,637,136 (+)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7150,859,705 - 150,940,410 (+)NCBIHuRef
CHM1_17157,138,219 - 157,218,641 (+)NCBICHM1_1
T2T-CHM13v2.07158,524,848 - 158,605,388 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27156,359,018 - 156,439,320 (+)NCBI
Dnajb6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39529,940,896 - 29,991,476 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl529,940,686 - 30,023,132 (+)EnsemblGRCm39 Ensembl
GRCm38529,735,898 - 29,786,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl529,735,688 - 29,818,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,062,438 - 30,113,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,066,727 - 30,117,265 (+)NCBIMGSCv36mm8
Celera527,252,388 - 27,302,966 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map515.27NCBI
Dnajb6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955579240,058 - 298,592 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955579240,058 - 298,592 (+)NCBIChiLan1.0ChiLan1.0
DNAJB6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26193,779,306 - 193,862,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1745,789,621 - 45,872,471 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07148,952,823 - 149,034,578 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17160,646,321 - 160,726,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7160,646,321 - 160,726,447 (+)Ensemblpanpan1.1panPan2
DNAJB6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11619,792,957 - 19,849,299 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1619,768,639 - 19,848,139 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1620,343,419 - 20,416,692 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01621,506,648 - 21,580,260 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1621,506,604 - 21,580,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11619,875,287 - 19,947,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01620,457,639 - 20,531,095 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01620,509,879 - 20,583,663 (+)NCBIUU_Cfam_GSD_1.0
Dnajb6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051181,604,578 - 1,649,003 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936797332,962 - 377,397 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJB6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl181,444,739 - 1,499,887 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1181,444,737 - 1,499,904 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2181,404,687 - 1,481,281 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJB6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121125,455,782 - 125,544,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21125,469,957 - 125,544,820 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607221,697,024 - 21,781,071 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajb6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248001,175,679 - 1,234,951 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248001,174,703 - 1,234,661 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnajb6
344 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:568
Count of miRNA genes:277
Interacting mature miRNAs:360
Transcripts:ENSRNOT00000035996
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat

Markers in Region
RH132724  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.245,493,075 - 5,493,225 (-)MAPPERmRatBN7.2
Rnor_6.042,774,785 - 2,774,934NCBIRnor6.0
Rnor_5.042,825,190 - 2,825,339UniSTSRnor5.0
RGSC_v3.44732,448 - 732,597UniSTSRGSC3.4
Celera44,823,377 - 4,823,526UniSTS
Cytogenetic Map4q11UniSTS
RH143603  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera44,823,242 - 4,823,425UniSTS
Cytogenetic Map4q11UniSTS
RH138190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.245,539,536 - 5,539,706 (-)MAPPERmRatBN7.2
Rnor_6.042,728,307 - 2,728,476NCBIRnor6.0
Rnor_5.042,778,712 - 2,778,881UniSTSRnor5.0
RGSC_v3.44778,906 - 779,075UniSTSRGSC3.4
Celera44,776,942 - 4,777,111UniSTS
Cytogenetic Map4q11UniSTS
RH140222  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01230,524,704 - 230,524,892UniSTSRnor5.0
Rnor_5.042,799,437 - 2,799,627UniSTSRnor5.0
RGSC_v3.44758,160 - 758,350UniSTSRGSC3.4
RGSC_v3.41210,490,707 - 210,490,895UniSTSRGSC3.4
Celera44,797,633 - 4,797,823UniSTS
Celera660,295,525 - 60,295,709UniSTS
Celera1202,516,329 - 202,516,517UniSTS
RH 3.4 Map51155.1UniSTS
Cytogenetic Map4q11UniSTS
Cytogenetic Map1q43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC078908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000035996   ⟹   ENSRNOP00000041883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl45,493,128 - 5,556,655 (-)Ensembl
Rnor_6.0 Ensembl42,711,385 - 2,774,890 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095089   ⟹   ENSRNOP00000081472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl45,497,793 - 5,556,659 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110545   ⟹   ENSRNOP00000080886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl45,494,035 - 5,556,655 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111440   ⟹   ENSRNOP00000078131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl45,518,653 - 5,556,659 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112530   ⟹   ENSRNOP00000079539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl45,452,683 - 5,556,623 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118469   ⟹   ENSRNOP00000093872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl45,536,723 - 5,556,646 (-)Ensembl
RefSeq Acc Id: NM_001013209   ⟹   NP_001013227
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,168,497 - 6,232,004 (-)NCBI
mRatBN7.245,493,119 - 5,556,631 (-)NCBI
Rnor_6.042,711,385 - 2,774,891 (+)NCBI
Rnor_5.042,761,321 - 2,825,374 (+)NCBI
RGSC_v3.44732,491 - 796,237 (-)RGD
Celera44,760,011 - 4,823,483 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235864   ⟹   XP_006235926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,168,502 - 6,232,040 (-)NCBI
mRatBN7.245,497,648 - 5,556,671 (-)NCBI
Rnor_6.042,711,333 - 2,770,362 (+)NCBI
Rnor_5.042,761,321 - 2,825,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107734   ⟹   XP_038963662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,212,086 - 6,232,040 (-)NCBI
mRatBN7.245,536,781 - 5,556,671 (-)NCBI
RefSeq Acc Id: XM_063286214   ⟹   XP_063142284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,168,502 - 6,232,052 (-)NCBI
RefSeq Acc Id: XM_063286216   ⟹   XP_063142286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,168,502 - 6,232,040 (-)NCBI
RefSeq Acc Id: XM_063286217   ⟹   XP_063142287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,168,502 - 6,232,040 (-)NCBI
RefSeq Acc Id: XM_063286218   ⟹   XP_063142288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,026,552 - 6,232,040 (-)NCBI
RefSeq Acc Id: XM_063286219   ⟹   XP_063142289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,010,081 - 6,232,040 (-)NCBI
RefSeq Acc Id: XM_063286220   ⟹   XP_063142290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,194,025 - 6,232,033 (-)NCBI
RefSeq Acc Id: XR_010065652
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,128,070 - 6,232,040 (-)NCBI
RefSeq Acc Id: XR_010065653
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr846,128,070 - 6,232,040 (-)NCBI
RefSeq Acc Id: NP_001013227   ⟸   NM_001013209
- UniProtKB: Q6AYU3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235926   ⟸   XM_006235864
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000041883   ⟸   ENSRNOT00000035996
RefSeq Acc Id: XP_038963662   ⟸   XM_039107734
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AML5 (UniProtKB/TrEMBL),   A6KJM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000081472   ⟸   ENSRNOT00000095089
RefSeq Acc Id: ENSRNOP00000079539   ⟸   ENSRNOT00000112530
RefSeq Acc Id: ENSRNOP00000078131   ⟸   ENSRNOT00000111440
RefSeq Acc Id: ENSRNOP00000093872   ⟸   ENSRNOT00000118469
RefSeq Acc Id: ENSRNOP00000080886   ⟸   ENSRNOT00000110545
RefSeq Acc Id: XP_063142289   ⟸   XM_063286219
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063142288   ⟸   XM_063286218
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063142284   ⟸   XM_063286214
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142287   ⟸   XM_063286217
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063142286   ⟸   XM_063286216
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142290   ⟸   XM_063286220
- Peptide Label: isoform X7
Protein Domains
J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYU3-F1-model_v2 AlphaFold Q6AYU3 1-357 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692775
Promoter ID:EPDNEW_R3299
Type:initiation region
Name:Dnajb6_1
Description:DnaJ heat shock protein family member B6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.042,711,387 - 2,711,447EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308207 AgrOrtholog
BioCyc Gene G2FUF-46173 BioCyc
Ensembl Genes ENSRNOG00000010353 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035996 ENTREZGENE
  ENSRNOT00000035996.4 UniProtKB/Swiss-Prot
  ENSRNOT00000095089.1 UniProtKB/TrEMBL
  ENSRNOT00000110545.1 UniProtKB/TrEMBL
  ENSRNOT00000111440.1 UniProtKB/TrEMBL
  ENSRNOT00000112530.1 UniProtKB/TrEMBL
  ENSRNOT00000118469.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113862 IMAGE-MGC_LOAD
InterPro DnaJ_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNJB2/6-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  J_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362293 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93667 IMAGE-MGC_LOAD
NCBI Gene 362293 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SIMILAR TO DNAJ HOMOLOG SUBFAMILY B MEMBER 6 (HEAT SHOCK PROTEIN J2) (HSJ-2) (MRJ) (MDJ4) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dnajb6 PhenoGen
PRINTS JDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010353 RatGTEx
SMART DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y9Y0_RAT UniProtKB/TrEMBL
  A0A8I5ZT18_RAT UniProtKB/TrEMBL
  A0A8I5ZTZ6_RAT UniProtKB/TrEMBL
  A0A8I6AML5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G3F8_RAT UniProtKB/TrEMBL
  A6KJM7_RAT UniProtKB/TrEMBL
  A6KJM9 ENTREZGENE, UniProtKB/TrEMBL
  DNJB6_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Dnajb6  DnaJ heat shock protein family (Hsp40) member B6  LOC108350642  uncharacterized LOC108350642  Data merged from RGD:11496124 737654 PROVISIONAL
2016-08-02 LOC108350642  uncharacterized LOC108350642      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-11-25 Dnajb6  DnaJ heat shock protein family (Hsp40) member B6  Dnajb6  DnaJ (Hsp40) homolog, subfamily B, member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Dnajb6  DnaJ (Hsp40) homolog, subfamily B, member 6  Dnajb6_predicted  DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dnajb6_predicted  DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED