Nup133 (nucleoporin 133) - Rat Genome Database

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Pathways
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Gene: Nup133 (nucleoporin 133) Rattus norvegicus
Analyze
Symbol: Nup133
Name: nucleoporin 133
RGD ID: 1307827
Description: Predicted to be a structural constituent of nuclear pore. Predicted to be involved in several processes, including nuclear pore organization; nucleocytoplasmic transport; and transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to act upstream of or within nervous system development; paraxial mesoderm development; and somite development. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore outer ring. Predicted to colocalize with kinetochore. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome and nephrotic syndrome type 18. Orthologous to human NUP133 (nucleoporin 133); PARTICIPATES IN mRNA nuclear export pathway; RNA transport pathway; INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292085; nuclear pore complex protein Nup133
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,789,065 - 68,838,692 (-)NCBIGRCr8
mRatBN7.21951,891,606 - 51,941,243 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,891,629 - 51,941,239 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,683,353 - 58,730,929 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,527,618 - 59,576,724 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,609,788 - 61,657,355 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,681,965 - 56,731,404 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,681,979 - 56,731,372 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,397,793 - 67,447,010 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,089,391 - 54,139,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11954,094,290 - 54,135,731 (-)NCBI
Celera1951,266,261 - 51,315,801 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. The crystal structure of the Ran-Nup153ZnF2 complex: a general Ran docking site at the nuclear pore complex. Schrader N, etal., Structure. 2008 Jul;16(7):1116-25. doi: 10.1016/j.str.2008.03.014.
Additional References at PubMed
PMID:11564755   PMID:11684705   PMID:12477932   PMID:15146057   PMID:15755804   PMID:17098863   PMID:17360435   PMID:17363900   PMID:18539113   PMID:19946888   PMID:30179222  


Genomics

Comparative Map Data
Nup133
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,789,065 - 68,838,692 (-)NCBIGRCr8
mRatBN7.21951,891,606 - 51,941,243 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,891,629 - 51,941,239 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,683,353 - 58,730,929 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,527,618 - 59,576,724 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,609,788 - 61,657,355 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,681,965 - 56,731,404 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,681,979 - 56,731,372 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,397,793 - 67,447,010 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,089,391 - 54,139,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11954,094,290 - 54,135,731 (-)NCBI
Celera1951,266,261 - 51,315,801 (-)NCBICelera
Cytogenetic Map19q12NCBI
NUP133
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381229,440,259 - 229,508,341 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1229,440,259 - 229,508,341 (-)EnsemblGRCh38hg38GRCh38
GRCh371229,576,006 - 229,644,088 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,643,667 - 227,710,711 (-)NCBINCBI36Build 36hg18NCBI36
Build 341225,883,778 - 225,950,823NCBI
Celera1202,845,335 - 202,912,382 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1200,067,994 - 200,134,429 (-)NCBIHuRef
CHM1_11230,849,379 - 230,916,422 (-)NCBICHM1_1
T2T-CHM13v2.01228,818,956 - 228,887,101 (-)NCBIT2T-CHM13v2.0
Nup133
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,623,862 - 124,676,019 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,623,862 - 124,676,004 (-)EnsemblGRCm39 Ensembl
GRCm388123,897,114 - 123,949,265 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,897,123 - 123,949,265 (-)EnsemblGRCm38mm10GRCm38
MGSCv378126,421,023 - 126,473,165 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,785,390 - 126,844,515 (-)NCBIMGSCv36mm8
Celera8128,164,134 - 128,223,740 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.27NCBI
Nup133
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,583,869 - 8,643,433 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554928,583,902 - 8,641,891 (+)NCBIChiLan1.0ChiLan1.0
NUP133
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,703,131 - 19,770,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,895,406 - 19,964,182 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01204,985,690 - 205,053,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,017,649 - 210,084,746 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,017,649 - 210,084,746 (-)Ensemblpanpan1.1panPan2
NUP133
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,751,902 - 9,805,796 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl49,751,986 - 9,805,033 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha49,743,074 - 9,796,954 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.049,782,546 - 9,836,436 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl49,782,546 - 9,837,895 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.149,786,177 - 9,840,080 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.049,900,846 - 9,954,649 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0410,152,904 - 10,207,002 (+)NCBIUU_Cfam_GSD_1.0
Nup133
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,020,333 - 44,066,046 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648420,185,584 - 20,231,352 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648420,185,558 - 20,230,904 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP133
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1460,353,474 - 60,408,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11460,353,420 - 60,404,952 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,175,917 - 65,228,454 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP133
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12566,710,468 - 66,777,672 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605568,563,692 - 68,638,481 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup133
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,589,372 - 19,648,884 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477519,589,496 - 19,647,823 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup133
461 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:60
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000024182
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

Markers in Region
D19Rat58  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,933,342 - 51,933,460 (+)MAPPERmRatBN7.2
Rnor_6.01956,723,500 - 56,723,617NCBIRnor6.0
Rnor_5.01967,439,114 - 67,439,231UniSTSRnor5.0
RGSC_v3.41954,132,090 - 54,132,208RGDRGSC3.4
RGSC_v3.41954,132,091 - 54,132,208UniSTSRGSC3.4
RGSC_v3.11954,136,972 - 54,137,089RGD
Celera1951,307,897 - 51,308,014UniSTS
RH 3.4 Map19737.1RGD
RH 3.4 Map19737.1UniSTS
RH 2.0 Map19707.7RGD
SHRSP x BN Map1943.8598RGD
Cytogenetic Map19q12UniSTS
RH133658  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,892,540 - 51,892,720 (+)MAPPERmRatBN7.2
Rnor_6.01956,682,900 - 56,683,079NCBIRnor6.0
Rnor_5.01967,398,728 - 67,398,907UniSTSRnor5.0
RGSC_v3.41954,090,324 - 54,090,503UniSTSRGSC3.4
Celera1951,267,196 - 51,267,375UniSTS
RH 3.4 Map19723.4UniSTS
Cytogenetic Map19q12UniSTS
RH142038  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,897,869 - 51,898,052 (+)MAPPERmRatBN7.2
Rnor_6.01956,688,229 - 56,688,411NCBIRnor6.0
Rnor_5.01967,404,057 - 67,404,239UniSTSRnor5.0
RGSC_v3.41954,095,653 - 54,095,835UniSTSRGSC3.4
Celera1951,272,525 - 51,272,707UniSTS
RH 3.4 Map19721.7UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 34 18 19 18 1 1 63 22 41 11 1
Low 19 23 23 23 7 10 11 13 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000024182   ⟹   ENSRNOP00000024182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,891,629 - 51,941,228 (-)Ensembl
Rnor_6.0 Ensembl1956,681,979 - 56,731,372 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111578   ⟹   ENSRNOP00000088347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,891,629 - 51,941,228 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118626   ⟹   ENSRNOP00000088052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,891,950 - 51,941,239 (-)Ensembl
RefSeq Acc Id: NM_001400955   ⟹   NP_001387884
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,789,065 - 68,838,692 (-)NCBI
mRatBN7.21951,891,606 - 51,941,239 (-)NCBI
RefSeq Acc Id: XM_008772671   ⟹   XP_008770893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,789,086 - 68,836,243 (-)NCBI
mRatBN7.21951,891,606 - 51,941,230 (-)NCBI
Rnor_6.01956,681,965 - 56,731,402 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098297   ⟹   XP_038954225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,789,086 - 68,813,914 (-)NCBI
mRatBN7.21951,891,606 - 51,916,456 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387884 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770893 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954225 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024182
  ENSRNOP00000024182.6
  ENSRNOP00000088052.1
  ENSRNOP00000088347.1
Reference Protein Sequences
RefSeq Acc Id: XP_008770893   ⟸   XM_008772671
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7P7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024182   ⟸   ENSRNOT00000024182
RefSeq Acc Id: XP_038954225   ⟸   XM_039098297
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000088052   ⟸   ENSRNOT00000118626
RefSeq Acc Id: ENSRNOP00000088347   ⟸   ENSRNOT00000111578
RefSeq Acc Id: NP_001387884   ⟸   NM_001400955
- UniProtKB: D3Z8B2 (UniProtKB/TrEMBL)
Protein Domains
Nucleoporin Nup133/Nup155-like C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8B2-F1-model_v2 AlphaFold D3Z8B2 1-1154 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701243
Promoter ID:EPDNEW_R11755
Type:multiple initiation site
Name:Nup133_1
Description:nucleoporin 133
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01956,731,384 - 56,731,444EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307827 AgrOrtholog
BioCyc Gene G2FUF-5262 BioCyc
Ensembl Genes ENSRNOG00000017919 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024182 ENTREZGENE
  ENSRNOT00000024182.8 UniProtKB/TrEMBL
  ENSRNOT00000111578.1 UniProtKB/TrEMBL
  ENSRNOT00000118626.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1380 UniProtKB/TrEMBL
  1.25.40.700 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro Nucleoporin_Nup133/Nup155_C UniProtKB/TrEMBL
  Nup133-like UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
KEGG Report rno:292085 UniProtKB/TrEMBL
NCBI Gene 292085 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP133 UniProtKB/TrEMBL
  PTHR13405 UniProtKB/TrEMBL
Pfam Nucleoporin UniProtKB/TrEMBL
PhenoGen Nup133 PhenoGen
RatGTEx ENSRNOG00000017919 RatGTEx
Superfamily-SCOP Nucleoporin domain UniProtKB/TrEMBL
UniProt A0A8I6A4B0_RAT UniProtKB/TrEMBL
  A0A8I6A7P7 ENTREZGENE, UniProtKB/TrEMBL
  D3Z8B2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nup133  nucleoporin 133   Nup133_predicted  nucleoporin 133 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nup133_predicted  nucleoporin 133 (predicted)      Symbol and Name status set to approved 70820 APPROVED