Cse1l (chromosome segregation 1 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cse1l (chromosome segregation 1 like) Rattus norvegicus
Analyze
Symbol: Cse1l
Name: chromosome segregation 1 like
RGD ID: 1307536
Description: Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus and protein import into nucleus. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nuclear envelope. Orthologous to human CSE1L (chromosome segregation 1 like); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chromosome segregation 1-like; chromosome segregation 1-like (S. cerevisiae) ; CSE1 chromosome segregation 1 like; CSE1 chromosome segregation 1-like; CSE1 chromosome segregation 1-like (yeast); exportin-2; LOC362273
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83176,060,183 - 176,097,909 (+)NCBIGRCr8
mRatBN7.23155,641,104 - 155,678,866 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3155,641,166 - 155,678,865 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3159,442,696 - 159,480,332 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03167,941,670 - 167,979,302 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03165,683,366 - 165,720,994 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03163,664,074 - 163,702,074 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3163,664,136 - 163,702,060 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03169,824,936 - 169,862,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,061,678 - 158,100,065 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13157,967,713 - 158,005,990 (+)NCBI
Celera3154,222,746 - 154,260,352 (+)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4-amino-2,6-dinitrotoluene  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
dieldrin  (EXP)
dioxygen  (ISO)
disulfiram  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
ivermectin  (ISO)
kojic acid  (ISO)
L-methionine  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel dichloride  (EXP)
ozone  (ISO)
p-menthan-3-ol  (ISO)
pentachlorophenol  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
silicon dioxide  (ISO)
sirolimus  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachlorohydroquinone  (ISO)
thioacetamide  (EXP)
thiophenes  (ISO)
tolcapone  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
tunicamycin  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)
nuclear envelope  (IBA)
nucleoplasm  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19056867   PMID:19946888   PMID:20458337   PMID:24625528   PMID:25002582  


Genomics

Comparative Map Data
Cse1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83176,060,183 - 176,097,909 (+)NCBIGRCr8
mRatBN7.23155,641,104 - 155,678,866 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3155,641,166 - 155,678,865 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3159,442,696 - 159,480,332 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03167,941,670 - 167,979,302 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03165,683,366 - 165,720,994 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03163,664,074 - 163,702,074 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3163,664,136 - 163,702,060 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03169,824,936 - 169,862,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,061,678 - 158,100,065 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13157,967,713 - 158,005,990 (+)NCBI
Celera3154,222,746 - 154,260,352 (+)NCBICelera
Cytogenetic Map3q42NCBI
CSE1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382049,046,312 - 49,096,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2049,046,246 - 49,096,960 (+)EnsemblGRCh38hg38GRCh38
GRCh372047,662,849 - 47,713,486 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,096,245 - 47,146,893 (+)NCBINCBI36Build 36hg18NCBI36
Celera2044,367,453 - 44,418,132 (+)NCBICelera
Cytogenetic Map20q13.13NCBI
HuRef2044,412,660 - 44,463,086 (+)NCBIHuRef
CHM1_12047,567,020 - 47,617,675 (+)NCBICHM1_1
T2T-CHM13v2.02050,815,816 - 50,866,450 (+)NCBIT2T-CHM13v2.0
Cse1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392166,747,961 - 166,788,309 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2166,747,960 - 166,788,309 (+)EnsemblGRCm39 Ensembl
GRCm382166,906,041 - 166,946,389 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2166,906,040 - 166,946,389 (+)EnsemblGRCm38mm10GRCm38
MGSCv372166,731,596 - 166,771,889 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362166,597,301 - 166,637,468 (+)NCBIMGSCv36mm8
Celera2172,845,501 - 172,885,798 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map287.22NCBI
Cse1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554459,013,297 - 9,040,813 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554459,012,953 - 9,053,852 (-)NCBIChiLan1.0ChiLan1.0
CSE1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22154,789,329 - 54,839,825 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12054,782,436 - 54,832,932 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02045,386,124 - 45,436,283 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12046,452,485 - 46,502,202 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2046,452,485 - 46,502,207 (+)Ensemblpanpan1.1panPan2
CSE1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12435,759,556 - 35,806,090 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2435,759,598 - 35,805,769 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,002,354 - 35,048,962 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02436,464,206 - 36,510,927 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2436,464,779 - 36,510,769 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12435,705,442 - 35,752,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02435,839,162 - 35,886,060 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02436,380,413 - 36,427,068 (+)NCBIUU_Cfam_GSD_1.0
Cse1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,659,220 - 189,703,923 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365145,110,186 - 5,157,584 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365145,112,961 - 5,157,584 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSE1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1750,744,910 - 50,797,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11750,744,896 - 50,796,835 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21757,095,214 - 57,256,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSE1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,891,230 - 14,938,425 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl214,891,665 - 14,938,377 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605063,392,835 - 63,440,285 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cse1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247906,239,496 - 6,280,394 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247906,238,702 - 6,280,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cse1l
164 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:52
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000010210
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat

Markers in Region
YWHAB  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23155,661,998 - 155,662,100 (+)MAPPERmRatBN7.2
mRatBN7.23155,661,998 - 155,662,100 (-)MAPPERmRatBN7.2
Rnor_6.03163,696,038 - 163,696,139NCBIRnor6.0
Rnor_6.03163,684,953 - 163,685,054NCBIRnor6.0
Rnor_5.03169,845,819 - 169,845,920UniSTSRnor5.0
RGSC_v3.43158,082,494 - 158,082,595UniSTSRGSC3.4
RGSC_v3.43158,094,043 - 158,094,144UniSTSRGSC3.4
Celera3154,243,565 - 154,243,666UniSTS
Cytogenetic Map3q42UniSTS
RH125698  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23155,678,677 - 155,678,837 (+)MAPPERmRatBN7.2
Rnor_6.03163,701,883 - 163,702,042NCBIRnor6.0
Rnor_5.03169,862,390 - 169,862,549UniSTSRnor5.0
RGSC_v3.43158,099,888 - 158,100,047UniSTSRGSC3.4
Celera3154,260,175 - 154,260,334UniSTS
Cytogenetic Map3q42UniSTS
BE109633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23155,678,268 - 155,678,377 (+)MAPPERmRatBN7.2
Rnor_6.03163,701,474 - 163,701,582NCBIRnor6.0
Rnor_5.03169,861,981 - 169,862,089UniSTSRnor5.0
RGSC_v3.43158,099,479 - 158,099,587UniSTSRGSC3.4
Celera3154,259,766 - 154,259,874UniSTS
RH 3.4 Map31470.7UniSTS
Cytogenetic Map3q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010210   ⟹   ENSRNOP00000010210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3155,641,166 - 155,678,865 (+)Ensembl
Rnor_6.0 Ensembl3163,664,136 - 163,702,060 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111061   ⟹   ENSRNOP00000077056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3155,641,166 - 155,678,865 (+)Ensembl
RefSeq Acc Id: NM_001108607   ⟹   NP_001102077
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,060,238 - 176,097,909 (+)NCBI
mRatBN7.23155,641,179 - 155,678,855 (+)NCBI
Rnor_6.03163,664,136 - 163,702,060 (+)NCBI
Rnor_5.03169,824,936 - 169,862,578 (+)NCBI
RGSC_v3.43158,061,678 - 158,100,065 (+)RGD
Celera3154,222,746 - 154,260,352 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235648   ⟹   XP_006235710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,060,189 - 176,097,802 (+)NCBI
mRatBN7.23155,641,114 - 155,678,862 (+)NCBI
Rnor_6.03163,664,074 - 163,702,074 (+)NCBI
Rnor_5.03169,824,936 - 169,862,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063284225   ⟹   XP_063140295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,060,183 - 176,097,802 (+)NCBI
RefSeq Acc Id: XM_063284226   ⟹   XP_063140296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,060,786 - 176,097,802 (+)NCBI
RefSeq Acc Id: XM_063284227   ⟹   XP_063140297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,060,189 - 176,097,802 (+)NCBI
RefSeq Acc Id: XM_063284228   ⟹   XP_063140298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,060,603 - 176,097,802 (+)NCBI
RefSeq Acc Id: XM_063284229   ⟹   XP_063140299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,060,603 - 176,097,802 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102077   ⟸   NM_001108607
- UniProtKB: D3ZPR0 (UniProtKB/TrEMBL),   A6JXI1 (UniProtKB/TrEMBL),   A0A8I5XVR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235710   ⟸   XM_006235648
- Peptide Label: isoform X2
- UniProtKB: D3ZPR0 (UniProtKB/TrEMBL),   A6JXI1 (UniProtKB/TrEMBL),   A0A8I5XVR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010210   ⟸   ENSRNOT00000010210
RefSeq Acc Id: ENSRNOP00000077056   ⟸   ENSRNOT00000111061
RefSeq Acc Id: XP_063140295   ⟸   XM_063284225
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140297   ⟸   XM_063284227
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140298   ⟸   XM_063284228
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140299   ⟸   XM_063284229
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140296   ⟸   XM_063284226
- Peptide Label: isoform X1
Protein Domains
Importin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPR0-F1-model_v2 AlphaFold D3ZPR0 1-971 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692686
Promoter ID:EPDNEW_R3211
Type:initiation region
Name:Cse1l_1
Description:chromosome segregation 1 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03163,664,096 - 163,664,156EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307536 AgrOrtholog
BioCyc Gene G2FUF-46761 BioCyc
Ensembl Genes ENSRNOG00000007665 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010210 ENTREZGENE
  ENSRNOT00000010210.5 UniProtKB/TrEMBL
  ENSRNOT00000111061.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CAS_CSE1_C UniProtKB/TrEMBL
  Exportin/Importin_Cse1-like UniProtKB/TrEMBL
  Importin-b_N UniProtKB/TrEMBL
KEGG Report rno:362273 UniProtKB/TrEMBL
NCBI Gene 362273 ENTREZGENE
PANTHER EXPORTIN-2 UniProtKB/TrEMBL
  IMPORTIN-7, 8, 11 UniProtKB/TrEMBL
Pfam CAS_CSE1 UniProtKB/TrEMBL
  Cse1 UniProtKB/TrEMBL
  IBN_N UniProtKB/TrEMBL
PhenoGen Cse1l PhenoGen
PROSITE IMPORTIN_B_NT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007665 RatGTEx
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I5XVR1 ENTREZGENE, UniProtKB/TrEMBL
  A6JXI1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPR0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 Cse1l  chromosome segregation 1 like  Cse1l  CSE1 chromosome segregation 1 like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-13 Cse1l  CSE1 chromosome segregation 1 like  Cse1l  CSE1 chromosome segregation 1-like (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-02-04 Cse1l  CSE1 chromosome segregation 1-like (yeast)  Cse1l  chromosome segregation 1-like (S. cerevisiae)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cse1l  chromosome segregation 1-like (S. cerevisiae)   Cse1l_predicted  chromosome segregation 1-like (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cse1l_predicted  chromosome segregation 1-like (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED