Slc41a2 (solute carrier family 41 member 2) - Rat Genome Database

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Gene: Slc41a2 (solute carrier family 41 member 2) Rattus norvegicus
Analyze
Symbol: Slc41a2
Name: solute carrier family 41 member 2
RGD ID: 1307292
Description: Predicted to enable inorganic cation transmembrane transporter activity. Predicted to be involved in metal ion transport. Predicted to act upstream of or within metal ion transport. Predicted to be active in plasma membrane. Orthologous to human SLC41A2 (solute carrier family 41 member 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362861; solute carrier family 41 (magnesium transporter), member 2; solute carrier family 41, member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,271,298 - 22,378,764 (+)NCBIGRCr8
mRatBN7.2720,383,714 - 20,491,178 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,383,757 - 20,491,166 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,348,186 - 22,455,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,510,946 - 24,618,527 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,287,953 - 24,395,538 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,522,314 - 26,607,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,522,314 - 26,607,861 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,651,682 - 26,734,269 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,583,232 - 22,669,674 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,600,108 - 22,687,614 (+)NCBI
Celera717,567,910 - 17,673,805 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (EXP)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (ISO)
dopamine  (EXP)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
fenoldopam  (EXP)
fenthion  (ISO)
flutamide  (EXP)
furan  (EXP,ISO)
gentamycin  (EXP)
glafenine  (EXP)
inulin  (ISO)
lead(0)  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
oxycodone  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
ritodrine  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15809054  


Genomics

Comparative Map Data
Slc41a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,271,298 - 22,378,764 (+)NCBIGRCr8
mRatBN7.2720,383,714 - 20,491,178 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,383,757 - 20,491,166 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,348,186 - 22,455,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,510,946 - 24,618,527 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,287,953 - 24,395,538 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,522,314 - 26,607,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,522,314 - 26,607,861 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,651,682 - 26,734,269 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,583,232 - 22,669,674 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,600,108 - 22,687,614 (+)NCBI
Celera717,567,910 - 17,673,805 (+)NCBICelera
Cytogenetic Map7q13NCBI
SLC41A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,801,801 - 104,958,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,801,801 - 104,958,744 (-)EnsemblGRCh38hg38GRCh38
GRCh3712105,195,579 - 105,352,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,722,491 - 103,846,562 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412103,700,830 - 103,824,900NCBI
Celera12104,861,914 - 104,987,145 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12102,256,271 - 102,381,704 (-)NCBIHuRef
CHM1_112105,163,071 - 105,288,259 (-)NCBICHM1_1
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBIT2T-CHM13v2.0
Slc41a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391083,066,712 - 83,174,657 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1083,066,712 - 83,173,746 (-)EnsemblGRCm39 Ensembl
GRCm381083,230,848 - 83,338,037 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1083,230,848 - 83,337,882 (-)EnsemblGRCm38mm10GRCm38
MGSCv371082,693,884 - 82,800,562 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,660,938 - 82,767,616 (-)NCBIMGSCv36mm8
Celera1085,219,356 - 85,326,265 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.03NCBI
Slc41a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540539,178,611 - 39,280,839 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540539,181,396 - 39,280,789 (-)NCBIChiLan1.0ChiLan1.0
SLC41A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,867,604 - 113,024,405 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,864,244 - 113,020,784 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,379,820 - 102,536,622 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,775,458 - 105,918,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,778,076 - 105,918,041 (-)Ensemblpanpan1.1panPan2
SLC41A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,404,968 - 33,519,146 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,410,561 - 33,515,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,318,238 - 33,437,432 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01034,240,808 - 34,360,505 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,240,757 - 34,357,705 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11033,975,963 - 34,095,691 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,259,839 - 34,379,294 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,453,302 - 34,572,802 (+)NCBIUU_Cfam_GSD_1.0
Slc41a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,711,334 - 16,837,311 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,721,134 - 9,847,726 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,721,564 - 9,845,004 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC41A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,593,915 - 79,720,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,593,913 - 79,721,599 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,991,320 - 83,121,500 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC41A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111100,031,092 - 100,137,481 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11100,068,637 - 100,163,592 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037144,850,129 - 144,990,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc41a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,103,622 - 4,193,574 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,103,372 - 4,195,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc41a2
953 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:185
Interacting mature miRNAs:210
Transcripts:ENSRNOT00000011572
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat

Markers in Region
RH139734  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,490,826 - 20,491,035 (+)MAPPERmRatBN7.2
Rnor_6.0726,607,796 - 26,608,004NCBIRnor6.0
Rnor_5.0726,734,204 - 26,734,412UniSTSRnor5.0
RGSC_v3.4722,669,609 - 22,669,817UniSTSRGSC3.4
Celera717,673,740 - 17,673,948UniSTS
RH 3.4 Map7115.9UniSTS
Cytogenetic Map7q13UniSTS
AI013202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,488,116 - 20,488,312 (+)MAPPERmRatBN7.2
Rnor_6.0726,605,086 - 26,605,281NCBIRnor6.0
Rnor_5.0726,731,494 - 26,731,689UniSTSRnor5.0
RGSC_v3.4722,666,899 - 22,667,094UniSTSRGSC3.4
Celera717,671,030 - 17,671,225UniSTS
RH 3.4 Map7117.05UniSTS
Cytogenetic Map7q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 15 13 13 50 12
Low 2 32 16 2 19 2 7 8 22 35 26 11 7
Below cutoff 11 26 26 26 1 3 2 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011572   ⟹   ENSRNOP00000011572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl720,383,757 - 20,491,166 (+)Ensembl
Rnor_6.0 Ensembl726,522,314 - 26,607,861 (+)Ensembl
RefSeq Acc Id: NM_001108742   ⟹   NP_001102212
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,271,313 - 22,378,764 (+)NCBI
mRatBN7.2720,383,714 - 20,491,178 (+)NCBI
Rnor_6.0726,522,314 - 26,607,861 (+)NCBI
Rnor_5.0726,651,682 - 26,734,269 (+)NCBI
RGSC_v3.4722,583,232 - 22,669,674 (+)RGD
Celera717,567,910 - 17,673,805 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401081   ⟹   NP_001388010
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,271,313 - 22,378,764 (+)NCBI
mRatBN7.2720,383,714 - 20,491,178 (+)NCBI
RefSeq Acc Id: NM_001401082   ⟹   NP_001388011
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,271,717 - 22,378,764 (+)NCBI
mRatBN7.2720,384,118 - 20,491,178 (+)NCBI
RefSeq Acc Id: XM_039079422   ⟹   XP_038935350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,282,933 - 22,378,764 (+)NCBI
mRatBN7.2720,395,347 - 20,491,178 (+)NCBI
RefSeq Acc Id: XM_039079423   ⟹   XP_038935351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,280,781 - 22,378,764 (+)NCBI
mRatBN7.2720,393,163 - 20,491,178 (+)NCBI
RefSeq Acc Id: XM_039079426   ⟹   XP_038935354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,280,769 - 22,378,764 (+)NCBI
mRatBN7.2720,393,163 - 20,491,178 (+)NCBI
RefSeq Acc Id: XM_039079427   ⟹   XP_038935355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,282,925 - 22,378,764 (+)NCBI
mRatBN7.2720,395,341 - 20,491,178 (+)NCBI
RefSeq Acc Id: XM_039079428   ⟹   XP_038935356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,282,923 - 22,370,724 (+)NCBI
mRatBN7.2720,395,339 - 20,483,132 (+)NCBI
RefSeq Acc Id: XM_063263757   ⟹   XP_063119827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,271,298 - 22,370,724 (+)NCBI
RefSeq Acc Id: XM_063263758   ⟹   XP_063119828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,280,768 - 22,370,724 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102212   ⟸   NM_001108742
- Peptide Label: isoform 2
- UniProtKB: A6IFH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011572   ⟸   ENSRNOT00000011572
RefSeq Acc Id: XP_038935351   ⟸   XM_039079423
- Peptide Label: isoform X1
- UniProtKB: D4A7D4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935354   ⟸   XM_039079426
- Peptide Label: isoform X1
- UniProtKB: D4A7D4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935356   ⟸   XM_039079428
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935355   ⟸   XM_039079427
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935350   ⟸   XM_039079422
- Peptide Label: isoform X1
- UniProtKB: D4A7D4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388010   ⟸   NM_001401081
- Peptide Label: isoform 1
- UniProtKB: D4A7D4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388011   ⟸   NM_001401082
- Peptide Label: isoform 1
- UniProtKB: D4A7D4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119827   ⟸   XM_063263757
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119828   ⟸   XM_063263758
- Peptide Label: isoform X2
Protein Domains
SLC41A/MgtE integral membrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7D4-F1-model_v2 AlphaFold D4A7D4 1-548 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307292 AgrOrtholog
BioCyc Gene G2FUF-34581 BioCyc
Ensembl Genes ENSRNOG00000008713 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011572 ENTREZGENE
  ENSRNOT00000011572.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.20 UniProtKB/TrEMBL
InterPro MgtE_Mg_transptr_membr UniProtKB/TrEMBL
  SLC41_membr_dom_sf UniProtKB/TrEMBL
  SLC41A1-3 UniProtKB/TrEMBL
KEGG Report rno:362861 UniProtKB/TrEMBL
NCBI Gene 362861 ENTREZGENE
PANTHER PTHR16228 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 41 MEMBER 2 UniProtKB/TrEMBL
Pfam MgtE UniProtKB/TrEMBL
PhenoGen Slc41a2 PhenoGen
RatGTEx ENSRNOG00000008713 RatGTEx
Superfamily-SCOP SSF161093 UniProtKB/TrEMBL
UniProt A6IFH1 ENTREZGENE, UniProtKB/TrEMBL
  D4A7D4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc41a2  solute carrier family 41 member 2  Slc41a2  solute carrier family 41 (magnesium transporter), member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc41a2  solute carrier family 41 (magnesium transporter), member 2  Slc41a2  solute carrier family 41, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Slc41a2  solute carrier family 41, member 2   Slc41a2_predicted  solute carrier family 41, member 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc41a2_predicted  solute carrier family 41, member 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED