Carf (calcium responsive transcription factor) - Rat Genome Database

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Gene: Carf (calcium responsive transcription factor) Rattus norvegicus
Analyze
Symbol: Carf
Name: calcium responsive transcription factor
RGD ID: 1306822
Description: Enables DNA binding activity and DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in cellular response to calcium ion. Located in nucleus. Orthologous to human CARF (calcium responsive transcription factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Als2cr8; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8; amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein; calcium response factor; calcium-response factor; calcium-responsive transcription factor; LOC301446
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,996,419 - 69,046,480 (+)NCBIGRCr8
mRatBN7.2961,502,368 - 61,552,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,506,956 - 61,550,462 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx970,003,754 - 70,051,035 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0975,119,315 - 75,166,596 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,438,022 - 73,485,304 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,878,526 - 66,928,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,888,393 - 66,926,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,692,215 - 66,742,322 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,642,178 - 58,689,313 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,799,001 - 58,836,295 (+)NCBI
Celera958,934,642 - 58,981,655 (+)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
granular component  (IEA,ISO)
nucleus  (IBA,IDA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. A calcium-responsive transcription factor, CaRF, that regulates neuronal activity-dependent expression of BDNF. Tao X, etal., Neuron. 2002 Jan 31;33(3):383-95.
Additional References at PubMed
PMID:12154087   PMID:22174809  


Genomics

Comparative Map Data
Carf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,996,419 - 69,046,480 (+)NCBIGRCr8
mRatBN7.2961,502,368 - 61,552,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,506,956 - 61,550,462 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx970,003,754 - 70,051,035 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0975,119,315 - 75,166,596 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,438,022 - 73,485,304 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,878,526 - 66,928,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,888,393 - 66,926,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,692,215 - 66,742,322 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,642,178 - 58,689,313 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,799,001 - 58,836,295 (+)NCBI
Celera958,934,642 - 58,981,655 (+)NCBICelera
Cytogenetic Map9q32NCBI
CARF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382202,912,275 - 202,988,263 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2202,912,214 - 202,988,263 (+)EnsemblGRCh38hg38GRCh38
GRCh372203,776,998 - 203,852,986 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,485,223 - 203,559,305 (+)NCBINCBI36Build 36hg18NCBI36
Build 342203,602,963 - 203,674,418NCBI
Celera2197,529,656 - 197,603,774 (+)NCBICelera
Cytogenetic Map2q33.2NCBI
HuRef2195,623,816 - 195,698,676 (+)NCBIHuRef
CHM1_12203,783,594 - 203,857,698 (+)NCBICHM1_1
T2T-CHM13v2.02203,393,728 - 203,469,790 (+)NCBIT2T-CHM13v2.0
Carf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39160,137,380 - 60,193,112 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl160,137,406 - 60,193,112 (+)EnsemblGRCm39 Ensembl
GRCm38160,098,221 - 60,153,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl160,098,247 - 60,153,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv37160,155,125 - 60,207,878 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36160,042,827 - 60,095,580 (+)NCBIMGSCv36mm8
Celera160,614,042 - 60,666,816 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.45NCBI
Carf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545711,896,492 - 11,936,229 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545711,853,256 - 11,947,909 (-)NCBIChiLan1.0ChiLan1.0
CARF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213105,514,952 - 105,596,010 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B105,529,986 - 105,611,406 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B90,145,504 - 90,224,042 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,291,738 - 208,368,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,291,742 - 208,367,028 (+)Ensemblpanpan1.1panPan2
CARF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,786,976 - 11,884,644 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,787,078 - 11,848,893 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,670,481 - 12,767,767 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03711,723,938 - 11,821,651 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,724,583 - 11,802,891 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,680,125 - 11,778,004 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,651,505 - 11,749,155 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,645,422 - 11,743,112 (+)NCBIUU_Cfam_GSD_1.0
Carf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,988,251 - 160,040,680 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367261,922,060 - 2,010,981 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367261,958,561 - 2,010,972 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,410,491 - 106,466,799 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,410,245 - 106,482,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,859,334 - 117,949,120 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CARF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11088,650,436 - 88,735,369 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1088,651,152 - 88,735,384 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040110,652,266 - 110,735,944 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Carf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476513,431,825 - 13,466,969 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476513,370,578 - 13,504,485 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Carf
177 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:31
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000023536
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96138143465691299Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat

Markers in Region
AU049192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,507,883 - 61,508,018 (+)MAPPERmRatBN7.2
Rnor_6.0966,883,884 - 66,884,018NCBIRnor6.0
Rnor_5.0966,697,548 - 66,697,682UniSTSRnor5.0
RGSC_v3.4958,647,511 - 58,647,645UniSTSRGSC3.4
Celera958,939,976 - 58,940,110UniSTS
Cytogenetic Map9q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 2 29 8 23 4
Low 3 43 53 41 17 41 8 11 45 27 18 7 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000023536   ⟹   ENSRNOP00000023536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,512,393 - 61,549,698 (+)Ensembl
Rnor_6.0 Ensembl966,888,393 - 66,925,923 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087194   ⟹   ENSRNOP00000072606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,506,956 - 61,550,462 (+)Ensembl
Rnor_6.0 Ensembl966,889,028 - 66,926,377 (+)Ensembl
RefSeq Acc Id: NM_001106915   ⟹   NP_001100385
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,996,599 - 69,043,745 (+)NCBI
mRatBN7.2961,502,550 - 61,549,698 (+)NCBI
Rnor_6.0966,878,551 - 66,925,923 (+)NCBI
Rnor_5.0966,692,215 - 66,742,322 (+)NCBI
RGSC_v3.4958,642,178 - 58,689,313 (+)RGD
Celera958,934,642 - 58,981,655 (+)RGD
Sequence:
RefSeq Acc Id: XM_006244971   ⟹   XP_006245033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,996,423 - 69,046,480 (+)NCBI
mRatBN7.2961,502,368 - 61,552,433 (+)NCBI
Rnor_6.0966,878,541 - 66,928,658 (+)NCBI
Rnor_5.0966,692,215 - 66,742,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244974   ⟹   XP_006245036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,006,349 - 69,046,480 (+)NCBI
mRatBN7.2961,510,096 - 61,552,433 (+)NCBI
Rnor_6.0966,887,696 - 66,928,658 (+)NCBI
Rnor_5.0966,692,215 - 66,742,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596367   ⟹   XP_017451856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,027,439 - 69,046,480 (+)NCBI
mRatBN7.2961,533,390 - 61,552,433 (+)NCBI
Rnor_6.0966,909,645 - 66,928,658 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083318   ⟹   XP_038939246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,996,419 - 69,046,480 (+)NCBI
mRatBN7.2961,502,368 - 61,552,433 (+)NCBI
RefSeq Acc Id: XM_039083319   ⟹   XP_038939247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,997,262 - 69,046,480 (+)NCBI
mRatBN7.2961,503,251 - 61,552,433 (+)NCBI
RefSeq Acc Id: XM_039083320   ⟹   XP_038939248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,023,530 - 69,046,480 (+)NCBI
mRatBN7.2961,529,472 - 61,552,433 (+)NCBI
RefSeq Acc Id: XM_039083321   ⟹   XP_038939249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,021,521 - 69,046,480 (+)NCBI
mRatBN7.2961,527,450 - 61,552,433 (+)NCBI
RefSeq Acc Id: NP_001100385   ⟸   NM_001106915
- UniProtKB: D4A7U2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245033   ⟸   XM_006244971
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006245036   ⟸   XM_006244974
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451856   ⟸   XM_017596367
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000023536   ⟸   ENSRNOT00000023536
RefSeq Acc Id: ENSRNOP00000072606   ⟸   ENSRNOT00000087194
RefSeq Acc Id: XP_038939246   ⟸   XM_039083318
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939247   ⟸   XM_039083319
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K3E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939249   ⟸   XM_039083321
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038939248   ⟸   XM_039083320
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7U2-F1-model_v2 AlphaFold D4A7U2 1-587 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306822 AgrOrtholog
BioCyc Gene G2FUF-27384 BioCyc
Ensembl Genes ENSRNOG00000017491 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055024257 UniProtKB/Swiss-Prot
  ENSRNOG00060020577 UniProtKB/Swiss-Prot
  ENSRNOG00065029095 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023536 ENTREZGENE
  ENSRNOT00000023536.7 UniProtKB/Swiss-Prot
  ENSRNOT00000087194.2 UniProtKB/TrEMBL
  ENSRNOT00055041677 UniProtKB/Swiss-Prot
  ENSRNOT00060035772 UniProtKB/Swiss-Prot
  ENSRNOT00065050303 UniProtKB/Swiss-Prot
InterPro CaRF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:301446 UniProtKB/Swiss-Prot
NCBI Gene 301446 ENTREZGENE
PANTHER CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14694 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ALS2CR8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Carf PhenoGen
RatGTEx ENSRNOG00000017491 RatGTEx
  ENSRNOG00055024257 RatGTEx
  ENSRNOG00060020577 RatGTEx
  ENSRNOG00065029095 RatGTEx
UniProt A0A0G2K3E6 ENTREZGENE, UniProtKB/TrEMBL
  CARTF_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Carf  calcium responsive transcription factor  Als2cr8  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-01-06 Als2cr8  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8  Carf  calcium response factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Carf  calcium response factor   Carf_predicted  calcium response factor (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Carf_predicted  calcium response factor (predicted)      Symbol and Name status set to approved 70820 APPROVED