Tfcp2 (transcription factor CP2) - Rat Genome Database

Name: Tfcp2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tfcp2 (transcription factor CP2) Rattus norvegicus

Analyze

Symbol:

Tfcp2

Name:

transcription factor CP2

RGD ID:

1306738

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in mRNA transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Orthologous to human TFCP2 (transcription factor CP2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha-globin transcription factor CP2; LOC315309; MGC187831; Tcfcp2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TFCP2 (transcription factor CP2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tfcp2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tfcp2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TFCP2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TFCP2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tfcp2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TFCP2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TFCP2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tfcp2 (transcription factor CP2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HNRNPUL2 (heterogeneous nuclear ribonucleoprotein U like 2)	HGNC	OMA
Homo sapiens (human):	HNRNPUL2-BSCL2 (HNRNPUL2-BSCL2 readthrough (NMD candidate))	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TFCP2 (transcription factor CP2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tfcp2 (transcription factor CP2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tfcp2 (transcription factor CP2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gem	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tfcp2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	133,495,577 - 133,537,799 (-)	NCBI		GRCr8
mRatBN7.2	7	131,616,777 - 131,658,995 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	131,616,785 - 131,658,939 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	133,419,070 - 133,460,849 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	135,644,645 - 135,686,424 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	135,558,095 - 135,599,915 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	142,138,836 - 142,181,036 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	142,138,844 - 142,180,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	139,946,303 - 139,988,508 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	139,254,024 - 139,295,978 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	139,332,056 - 139,372,152 (-)	NCBI
Celera	7	128,094,014 - 128,135,941 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

beta-carotene (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

cadmium atom (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenvalerate (EXP)

fonofos (ISO)

gentamycin (EXP)

geraniol (ISO)

hydralazine (ISO)

indometacin (ISO)

irinotecan (ISO)

isoflavones (ISO)

ivermectin (ISO)

leflunomide (EXP)

methimazole (EXP)

methotrexate (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

sodium fluoride (ISO)

sulfadimethoxine (EXP)

terbufos (ISO)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

triphenyl phosphate (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA transcription by RNA polymerase II (ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

regulation of transcription by RNA polymerase II (ISO)

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

protein-containing complex (ISO)

Molecular Function

cis-regulatory region sequence-specific DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IBA,ISO)

protein binding (IPI,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	The Fe65 adaptor protein interacts through its PID1 domain with the transcription factor CP2/LSF/LBP1.	Zambrano N, etal., J Biol Chem. 1998 Aug 7;273(32):20128-33.

Additional References at PubMed

PMID:8889548	PMID:11003662	PMID:12477932	PMID:15232220	PMID:15273251	PMID:16263792	PMID:18629613

Genomics

Comparative Map Data

Tfcp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	133,495,577 - 133,537,799 (-)	NCBI		GRCr8
mRatBN7.2	7	131,616,777 - 131,658,995 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	131,616,785 - 131,658,939 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	133,419,070 - 133,460,849 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	135,644,645 - 135,686,424 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	135,558,095 - 135,599,915 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	142,138,836 - 142,181,036 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	142,138,844 - 142,180,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	139,946,303 - 139,988,508 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	139,254,024 - 139,295,978 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	139,332,056 - 139,372,152 (-)	NCBI
Celera	7	128,094,014 - 128,135,941 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

TFCP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	51,093,656 - 51,173,135 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	51,093,656 - 51,173,135 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	51,487,439 - 51,566,918 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	49,774,887 - 49,852,931 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	49,774,887 - 49,852,931	NCBI
Celera	12	50,288,768 - 50,369,062 (-)	NCBI		Celera
Cytogenetic Map	12	q13.12-q13.13	NCBI
HuRef	12	48,519,794 - 48,599,541 (-)	NCBI		HuRef
CHM1_1	12	51,453,744 - 51,533,155 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	51,056,573 - 51,136,022 (-)	NCBI		T2T-CHM13v2.0

Tfcp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	100,395,083 - 100,449,896 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	100,395,893 - 100,449,889 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	100,497,781 - 100,552,014 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	100,498,012 - 100,552,008 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	100,333,227 - 100,382,378 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	100,330,830 - 100,379,981 (-)	NCBI		MGSCv36	mm8
Celera	15	102,655,055 - 102,704,214 (-)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	56.33	NCBI

Tfcp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955547	1,604,461 - 1,675,856 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955547	1,608,631 - 1,675,331 (-)	NCBI	ChiLan1.0	ChiLan1.0

TFCP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	43,012,574 - 43,092,254 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	43,009,336 - 43,089,016 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	37,580,263 - 37,659,680 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	38,486,340 - 38,563,300 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	38,486,340 - 38,563,299 (+)	Ensembl	panpan1.1		panPan2

TFCP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	3,677,470 - 3,738,322 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	3,677,465 - 3,737,292 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	42,517,912 - 42,578,637 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	3,724,686 - 3,785,721 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	3,724,686 - 3,785,210 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	3,691,769 - 3,752,481 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	3,678,917 - 3,739,849 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	42,914,279 - 42,975,638 (-)	NCBI		UU_Cfam_GSD_1.0

Tfcp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	64,377,873 - 64,446,252 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	8,716,042 - 8,787,201 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	8,718,578 - 8,786,957 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TFCP2
(Sus scrofa - pig)

No map positions available.

TFCP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	47,303,801 - 47,373,724 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	47,303,796 - 47,373,344 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	198,725,239 - 198,795,967 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tfcp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	1,082,794 - 1,137,091 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	1,082,788 - 1,137,096 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tfcp2
161 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	762
Count of miRNA genes:	318
Interacting mature miRNAs:	408
Transcripts:	ENSRNOT00000037447
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Markers in Region

BF405593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	131,617,278 - 131,617,481 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	142,139,338 - 142,139,540	NCBI	Rnor6.0
Rnor_5.0	7	139,946,809 - 139,947,011	UniSTS	Rnor5.0
RGSC_v3.4	7	139,254,519 - 139,254,721	UniSTS	RGSC3.4
Celera	7	128,094,509 - 128,094,711	UniSTS
RH 3.4 Map	7	1076.9	UniSTS
Cytogenetic Map	7	q36	UniSTS

RH134575

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	131,627,768 - 131,627,948 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	142,149,828 - 142,150,007	NCBI	Rnor6.0
Rnor_5.0	7	139,957,299 - 139,957,478	UniSTS	Rnor5.0
RGSC_v3.4	7	139,265,009 - 139,265,188	UniSTS	RGSC3.4
Celera	7	128,105,001 - 128,105,180	UniSTS
RH 3.4 Map	7	1052.6	UniSTS
Cytogenetic Map	7	q36	UniSTS

AI179648

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	131,616,799 - 131,616,986 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	142,138,859 - 142,139,045	NCBI	Rnor6.0
Rnor_5.0	7	139,946,330 - 139,946,516	UniSTS	Rnor5.0
RGSC_v3.4	7	139,254,040 - 139,254,226	UniSTS	RGSC3.4
Celera	7	128,094,030 - 128,094,216	UniSTS
RH 3.4 Map	7	1076.3	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	22	37	21	18	21			74	35	36	11
Low	2	21	20	20	1	20	8	11			5		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF418890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK475611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK841330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000037447 ⟹ ENSRNOP00000037251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	131,616,785 - 131,658,741 (-)	Ensembl
Rnor_6.0 Ensembl	7	142,138,844 - 142,180,794 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087632 ⟹ ENSRNOP00000068740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	131,616,788 - 131,658,939 (-)	Ensembl
Rnor_6.0 Ensembl	7	142,139,303 - 142,180,997 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117066 ⟹ ENSRNOP00000091135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	131,623,952 - 131,658,741 (-)	Ensembl

RefSeq Acc Id:

NM_001134714 ⟹ NP_001128186

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,495,577 - 133,537,531 (-)	NCBI
mRatBN7.2	7	131,616,784 - 131,658,741 (-)	NCBI
Rnor_6.0	7	142,138,843 - 142,180,794 (-)	NCBI
Rnor_5.0	7	139,946,303 - 139,988,508 (-)	NCBI
RGSC_v3.4	7	139,254,024 - 139,295,978 (-)	RGD
Celera	7	128,094,014 - 128,135,941 (-)	RGD

Sequence:

show sequence

GAGGGGCCGCTCGGAGCGGCCAGCGTGCTGCGCGTCTCTGCTTTGAGGCTGAGCGGAGGACGCT
GAGCGGCGGGTGGGCTTGGGAGAGCCGGAGTCGGGCTGAGGTCTGGCGGGACCCGGCGCCTCAC
GCCCCCGAGAGCGGAACGGGAGGGTTTCCTGTCACCGGGGCACCTGAGGAGCAGCTAGGGTACA
GCCCGTAGGTCAGGCTTGGGGTGCTGCGCGAGGAGCCGGGTTTGTAGTTGACTACTACTGTGTT
GTCTGCCGGGTAGAGTTACAGTGCGCGCCTTTGTACCGGAGCCGGCGCCTGCTGGGGCAGGGAA
GGAGCCGGAATGGCCTGGGCTCTGAAGCTGCCGCTAGCTGACGAAGTGATCGAGTCGGGGCTGG
TGCAGGACTTTGATGCTAGCCTGTCGGGCATTGGCCAGGAGCTGGGAGCTGGTGCTTATAGTAT
GAGTGATGTCCTTGCATTGCCTATTTTTAAGCAAGAAGAGTCAAGTTTGCCTCCTGAAAATGAG
AACGAGATCCTGCCTTTTCAGTACGTCCTCTGTGCCGCCACCTCGCCAGCAGTGAAGCTCCACG
ATGAGACCCTGACCTACCTCAATCAAGGACAGTCTTATGAAATCCGAATGCTAGACAATAGAAA
ACTGGGAGAACTACCGGAAATCAACGGCAAGTTAGTGAAGAGCATCTTCCGTGTAGTGTTCCAC
GACAGGAGACTGCAGTACACTGAGCACCAGCAGCTGGAGGGCTGGAGGTGGAACCGGCCAGGAG
ACAGGATACTGGACATCGATATCCCAATGTCTGTGGGTGTAATTGATCCCAGGGCCAATCCTAC
CCAGCTAAACACAGTGGAGTTCCTGTGGGACCCTGCAAAGAGGACATCTGTGTTTATTCAGGTG
CACTGCATCAGCACTGAGTTCACTATGAGGAAGCACGGTGGGGAAAAGGGGGTGCCCTTCCGAG
TGCAGATCGATACCTTCAAGGAGAACGAGAATGGAGAGTACACGGAGCACTTGCACTCGGCCAG
CTGCCAGATCAAAGTCTTCAAGCCTAAAGGTGCAGACAGAAAACAAAAGATAGATAGAGAGAAG
ATGGAGAAACGGACGCCCCATGAAAAGGAGAAATACCAGCCTTCTTATGAGACAACCATACTCA
CAGAGTGTTCTCCGTGGCCTGAGATCACCTACGTCAGCAATTCCCCATCGCCTGGCTTCAACAG
CTCCCACAGCAGTTTCTCTCTTGGGGAAGGAAACGGCTCGCCCAACCACCAGCCAGAGCCACCC
CCTCCAGTCACGGACAACCTCTTGCCAACAACCACGCCTCAGGAAGCCCAGCAGTGGCTGCATC
GAAACCGGTTTTCCACGTTCACGAGGCTTTTCACCAACTTCTCAGGGGCAGACTTACTGAAACT
AACTAGAGATGACGTGATCCAAATCTGTGGCCCTGCAGATGGAATCCGGCTCTTCAACGCATTG
AAAGGCCGGATGGTGCGTCCAAGGCTGACCATTTATGTCTGTCAGGAGTCGTTGCAGTTGAGGG
AGCAGCCACAGCAGCCGCAGCCGCAGCAGAAGCAGGAGGACGGAGATTCAAATGTGTACCATGC
TATCTATCTAGAGGAGCTGACAGCTGTTGAATTAACAGAAAAAATTGCTCAGCTTTTCAGTATT
TCTCCTCAGCAGATCAGCCAGATTTACAAGCAAGGGCCGACCGGAATCCATGTGCTCATCAGCG
ATGAGATGGTACAGAACTTTCAGGAAGAAGCCTGCTTTATTCTGGACACAATGGAAGCGGAAAC
CAGTGATAGCTATCATGTCATTCTCAAGTAGGACAAGCCTCTCACATTCGATGGCTGCCGCTGC
CTTCACCTCCGACGACTGCCCTTTTGAAGGGGACATGACTGGAGATTAAAGGTCTTCAAGAACC
TGGCACATCTGAATGTTGGGGAGGGGGGTGTCCAGTGCAGGGCGAGCAGGCCCTAAAGTGGAAT
CCCAGACCCTTGTATTGGCCCCTGCTGTATGACGTCTTCAGATCACTGGCCAGACGTGGAGTTC
AGTGTTTCCCTAGGTTCTGGGTGCTGGTGACAGCGGTGAGAAGCCTGGCCCTTGGGGTTTGTAG
AGGGCAGAGTGATAATGGGAGTCGTGCGATGTCTTCTGGAAAGAAGTTTAATTTTGTGATATAG
AGCTCTGACATTTTCCTAACATAAAAGTGAACATCTGTCTTCATAAAACCAAGCTATCTCTTTT
ATATCAAGTCTGTTGTCAGCTCTGCTCTGTTCACAATGTGGTGAGGAGAAACAGAATCTCTCCT
CACCTTCTTTTTGAGACAGGGTCACATGTTCTTGCTTCTACCTCCCAAGAGCTGGGATTACAAG
CTTTTGCCACCTGCTCCGTTTCTGCAGTGCTGGGCTTGAACCCAGAGCACGGCCTCCAACTGAG
CTCCAGCAGGCCCTTCCCTGTGTTCAGACCGTCTCTGGATTTCTAACTTGGTTCACCTGCAGTA
CCACAACTGAGAGTGATTTTGGCTAATATGTATTGGGAGAGACCAAGTGATAAATCCTGTGGGT
GGATTATCTTGTTTTATCCCCTTAATAAACTCAAAACAACTGGGGAAAAGTGACTTGAGGATAA
GGAAACGCAGATGAAGTGTGGGAGGGGGTGGATTGATGCCACCAGATGCTACCCTGTGTGCCTG
TGCTCACCATTAGTTCTTTCTGGGGCTATGCTGGAAACTGATGGACAAGCCACAGAAGGAGGCA
AACACCTAAATATAACCACAGTCGAGTCCCATAGAGCAGATGACACCCGGTGTCCCCAACCTCA
AGCACAGAGCTGGAGGTGAGGGACAAGTGTGTCCGACTCCAAGTTCATTGTTCTTGAGTGATAT
CCTCAAGCTGTTTAAGTAAATGGCGACTCTTCCGTGCTCTTCCCTACCCTCCCCTGTCTTGTTT
TGGCCTAGTGGTTTTTTTTTTTTTAATGTAAGTTTTATAAAAAATACATTCTTTCCCCTTCAAA
TTCATGCTGTGTTTATTTTTCTGCCTTTCTTCAAATAATTGTGTATCTGTGTGCATGTGCAGAA
TTTTAAAGCACTTGGGTCCTCCTTTTTCACATGTATAGTTTGTTTTGGCTTGGTTTTCCAAAAA
TAACATTTCTCTGTGTAGCCCCGGCTGTCCTGGAACTCACACTGTAGACAAGGCTGGCCTCAAA
CTCCAAGATCCCCCTTCCAAGTGCTGGGACTAAAGGTGTGCGCCACCAGCGTCAGGACACATGT
AAAGTTTTGCCAGAAATTTCCTTAAATTTTGTTGAGATGAACAAAGATAATTAGAGATTCTGTA
CTGAATTTGAATTTGTGTGTGTTTTGATAAAGCTTAGATTTTTTATAAGAGTTTTCAGTTGTTG
TTGCTGTCCATTAAAATCAGCCTGTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242341 ⟹ XP_006242403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,495,577 - 133,537,799 (-)	NCBI
mRatBN7.2	7	131,616,777 - 131,658,995 (-)	NCBI
Rnor_6.0	7	142,138,836 - 142,181,036 (-)	NCBI
Rnor_5.0	7	139,946,303 - 139,988,508 (-)	NCBI

Sequence:

show sequence

TGGTTGGCGCTGGGGGTTTGCGGCGGAGTCTGCGCCGAACTTTCGCTGTCCACGCTTCCAGGCG
GTCGTGGGGGACTAAGGAGGGCGTGGGGACTGCTCCGCAGAACCCGGGAGTTACAGTGCGCGCC
TTTGTACCGGAGCCGGCGCCTGCTGGGGCAGGGAAGGAGCCGGAATGGCCTGGGCTCTGAAGCT
GCCGCTAGCTGACGAAGTGATCGAGTCGGGGCTGGTGCAGGACTTTGATGCTAGCCTGTCGGGC
ATTGGCCAGGAGCTGGGAGCTGGTGCTTATAGTATGAGTGATGTCCTTGCATTGCCTATTTTTA
AGCAAGAAGAGTCAAGTTTGCCTCCTGAAAATGAGAACGAGATCCTGCCTTTTCAGTACGTCCT
CTGTGCCGCCACCTCGCCAGCAGTGAAGCTCCACGATGAGACCCTGACCTACCTCAATCAAGGA
CAGTCTTATGAAATCCGAATGCTAGACAATAGAAAACTGGGAGAACTACCGGAAATCAACGGCA
AGTTAGTGAAGAGCATCTTCCGTGTAGTGTTCCACGACAGGAGACTGCAGTACACTGAGCACCA
GCAGCTGGAGGGCTGGAGGTGGAACCGGCCAGGAGACAGGATACTGGACATCGATATCCCAATG
TCTGTGGGTGTAATTGATCCCAGGGCCAATCCTACCCAGCTAAACACAGTGGAGTTCCTGTGGG
ACCCTGCAAAGAGGACATCTGTGTTTATTCAGGTGCACTGCATCAGCACTGAGTTCACTATGAG
GAAGCACGGTGGGGAAAAGGGGGTGCCCTTCCGAGTGCAGATCGATACCTTCAAGGAGAACGAG
AATGGAGAGTACACGGAGCACTTGCACTCGGCCAGCTGCCAGATCAAAGTCTTCAAGCCTAAAG
GTGCAGACAGAAAACAAAAGATAGATAGAGAGAAGATGGAGAAACGGACGCCCCATGAAAAGGA
GAAATACCAGCCTTCTTATGAGACAACCATACTCACAGAGTGTTCTCCGTGGCCTGAGATCACC
TACGTCAGCAATTCCCCATCGCCTGGCTTCAACAGCTCCCACAGCAGTTTCTCTCTTGGGGAAG
GAAACGGCTCGCCCAACCACCAGCCAGAGCCACCCCCTCCAGTCACGGACAACCTCTTGCCAAC
AACCACGCCTCAGGAAGCCCAGCAGTGGCTGCATCGAAACCGGTTTTCCACGTTCACGAGGCTT
TTCACCAACTTCTCAGGGGCAGACTTACTGAAACTAACTAGAGATGACGTGATCCAAATCTGTG
GCCCTGCAGATGGAATCCGGCTCTTCAACGCATTGAAAGGCCGGATGGTGCGTCCAAGGCTGAC
CATTTATGTCTGTCAGGAGTCGTTGCAGTTGAGGGAGCAGCCACAGCAGCCGCAGCCGCAGCAG
AAGCAGGAGGACGGAGATTCAAATGGTACTTTCTTTGTGTACCATGCTATCTATCTAGAGGAGC
TGACAGCTGTTGAATTAACAGAAAAAATTGCTCAGCTTTTCAGTATTTCTCCTCAGCAGATCAG
CCAGATTTACAAGCAAGGGCCGACCGGAATCCATGTGCTCATCAGCGATGAGATGGTACAGAAC
TTTCAGGAAGAAGCCTGCTTTATTCTGGACACAATGGAAGCGGAAACCAGTGATAGCTATCATG
TCATTCTCAAGTAGGACAAGCCTCTCACATTCGATGGCTGCCGCTGCCTTCACCTCCGACGACT
GCCCTTTTGAAGGGGACATGACTGGAGATTAAAGGTCTTCAAGAACCTGGCACATCTGAATGTT
GGGGAGGGGGGTGTCCAGTGCAGGGCGAGCAGGCCCTAAAGTGGAATCCCAGACCCTTGTATTG
GCCCCTGCTGTATGACGTCTTCAGATCACTGGCCAGACGTGGAGTTCAGTGTTTCCCTAGGTTC
TGGGTGCTGGTGACAGCGGTGAGAAGCCTGGCCCTTGGGGTTTGTAGAGGGCAGAGTGATAATG
GGAGTCGTGCGATGTCTTCTGGAAAGAAGTTTAATTTTGTGATATAGAGCTCTGACATTTTCCT
AACATAAAAGTGAACATCTGTCTTCATAAAACCAAGCTATCTCTTTTATATCAAGTCTGTTGTC
AGCTCTGCTCTGTTCACAATGTGGTGAGGAGAAACAGAATCTCTCCTCACCTTCTTTTTGAGAC
AGGGTCACATGTTCTTGCTTCTACCTCCCAAGAGCTGGGATTACAAGCTTTTGCCACCTGCTCC
GTTTCTGCAGTGCTGGGCTTGAACCCAGAGCACGGCCTCCAACTGAGCTCCAGCAGGCCCTTCC
CTGTGTTCAGACCGTCTCTGGATTTCTAACTTGGTTCACCTGCAGTACCACAACTGAGAGTGAT
TTTGGCTAATATGTATTGGGAGAGACCAAGTGATAAATCCTGTGGGTGGATTATCTTGTTTTAT
CCCCTTAATAAACTCAAAACAACTGGGGAAAAGTGACTTGAGGATAAGGAAACGCAGATGAAGT
GTGGGAGGGGGTGGATTGATGCCACCAGATGCTACCCTGTGTGCCTGTGCTCACCATTAGTTCT
TTCTGGGGCTATGCTGGAAACTGATGGACAAGCCACAGAAGGAGGCAAACACCTAAATATAACC
ACAGTCGAGTCCCATAGAGCAGATGACACCCGGTGTCCCCAACCTCAAGCACAGAGCTGGAGGT
GAGGGACAAGTGTGTCCGACTCCAAGTTCATTGTTCTTGAGTGATATCCTCAAGCTGTTTAAGT
AAATGGCGACTCTTCCGTGCTCTTCCCTACCCTCCCCTGTCTTGTTTTGGCCTAGTGGTTTTTT
TTTTTTTTTTAATGTAAGTTTTATAAAAAATACATTCTTTCCCCTTCAAATTCATGCTGTGTTT
ATTTTTCTGCCTTTCTTCAAATAATTGTGTATCTGTGTGCATGTGCAGAATTTTAAAGCACTTG
GGTCCTCCTTTTTCACATGTATAGTTTGTTTTGGCTTGGTTTTCCAAAAATAACATTTCTCTGT
GTAGCCCCGGCTGTCCTGGAACTCACACTGTAGACAAGGCTGGCCTCAAACTCCAAGATCCCCC
TTCCAAGTGCTGGGACTAAAGGTGTGCGCCACCAGCGTCAGGACACATGTAAAGTTTTGCCAGA
AATTTCCTTAAATTTTGTTGAGATGAACAAAGATAATTAGAGATTCTGTACTGAATTTGAATTT
GTGTGTGTTTTGATAAAGCTTAGATTTTTTATAAGAGTTTTCAGTTGTTGTTGCTGTCCATTAA
AATCAGCCTGTAGTTTGGG

hide sequence

RefSeq Acc Id:

XM_017594895 ⟹ XP_017450384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,495,577 - 133,537,622 (-)	NCBI
mRatBN7.2	7	131,616,777 - 131,658,834 (-)	NCBI
Rnor_6.0	7	142,138,836 - 142,180,885 (-)	NCBI

Sequence:

show sequence

ACGGGTGACCGGATGTTATCTGACTGACCGGAAGCGGGGCCTGAGGGAAAGTGCGGATACCCGG
AGGGAGGAGCTTTCCGAAGAAGGGGCGGAGGGGCCGCTCGGAGCGGCCAGCGTGCTGCGCGTCT
CTGCTTTGAGGCTGAGCGGAGGACGCTGAGCGGCGGGTGGGCTTGGGAGAGCCGGAGTCGGGCT
GAGGTCTGGCGGGACCCGGCGCCTCACGCCCCCGAGAGCGGAACGGGAGGGTTTCCTGTCACCG
GGGCACCTGAGGAGCAGCTAGGGTACAGCCCGTAGGTCAGGCTTGGGGTGCTGCGCGAGGAGCC
GGGTTTGTAGTTGACTACTACTGTGTTGTCTGCCGGGTAGAGTTACAGTGCGCGCCTTTGTACC
GGAGCCGGCGCCTGCTGGGGCAGGGAAGGAGCCGGAATGGCCTGGGCTCTGAAGCTGCCGCTAG
CTGACGAAGTGATCGAGTCGGGGCTGGTGCAGGACTTTGATGCTAGCCTGTCGGGCATTGGCCA
GGAGCTGGGAGCTGGTGCTTATAGTATGAGTGATGTCCTTGCATTGCCTATTTTTAAGCAAGAA
GAGTCAAGTTTGCCTCCTGAAAATGAGAACGAGATCCTGCCTTTTCAGTACGTCCTCTGTGCCG
CCACCTCGCCAGCAGTGAAGCTCCACGATGAGACCCTGACCTACCTCAATCAAGGACAGTCTTA
TGAAATCCGAATGCTAGACAATAGAAAACTGGGAGAACTACCGGAAATCAACGGCAAGTTAGTG
AAGAGCATCTTCCGTGTAGTGTTCCACGACAGGAGACTGCAGTACACTGAGCACCAGCAGCTGG
AGGGCTGGAGGTGGAACCGGCCAGGAGACAGGATACTGGACATCGATATCCCAATGTCTGTGGG
TGTAATTGATCCCAGGGCCAATCCTACCCAGCTAAACACAGTGGAGTTCCTGTGGGACCCTGCA
AAGAGGACATCTGTGTTTATTCAGGTGCACTGCATCAGCACTGAGTTCACTATGAGGAAGCACG
GTGGGGAAAAGGGGGTGCCCTTCCGAGTGCAGATCGATACCTTCAAGGAGAACGAGAATGGAGA
GTACACGGAGCACTTGCACTCGGCCAGCTGCCAGATCAAAGTCTTCAAGCCTAAAGGTGCAGAC
AGAAAACAAAAGATAGATAGAGAGAAGATGGAGAAACGGACGCCCCATGAAAAGGAGAAATACC
AGCCTTCTTATGAGACAACCATACTCACAGAGTGTTCTCCGTGGCCTGAGATCACCTACGTCAG
CAATTCCCCATCGCCTGGCTTCAACAGCTCCCACAGCAGTTTCTCTCTTGGGGAAGGAAACGGC
TCGCCCAACCACCAGCCAGAGCCACCCCCTCCAGTCACGGACAACCTCTTGCCAACAACCACGC
CTCAGGAAGCCCAGCAGTGGCTGCATCGAAACCGGTTTTCCACGTTCACGAGGCTTTTCACCAA
CTTCTCAGGGGCAGACTTACTGAAACTAACTAGAGATGACGTGATCCAAATCTGTGGCCCTGCA
GATGGAATCCGGCTCTTCAACGCATTGAAAGGCCGGATGGTGCGTCCAAGGCTGACCATTTATG
TCTGTCAGGAGTCGTTGCAGTTGAGGGAGCAGCCACAGCAGCCGCAGCCGCAGCAGAAGCAGGA
GGACGGAGATTCAAATGGTACTTTCTTTGTGTACCATGCTATCTATCTAGAGGAGCTGACAGCT
GTTGAATTAACAGAAAAAATTGCTCAGCTTTTCAGTATTTCTCCTCAGCAGATCAGCCAGATTT
ACAAGCAAGGGCCGACCGGAATCCATGTGCTCATCAGCGATGAGATGGTACAGAACTTTCAGGA
AGAAGCCTGCTTTATTCTGGACACAATGGAAGCGGAAACCAGTGATAGCTATCATGTCATTCTC
AAGTAGGACAAGCCTCTCACATTCGATGGCTGCCGCTGCCTTCACCTCCGACGACTGCCCTTTT
GAAGGGGACATGACTGGAGATTAAAGGTCTTCAAGAACCTGGCACATCTGAATGTTGGGGAGGG
GGGTGTCCAGTGCAGGGCGAGCAGGCCCTAAAGTGGAATCCCAGACCCTTGTATTGGCCCCTGC
TGTATGACGTCTTCAGATCACTGGCCAGACGTGGAGTTCAGTGTTTCCCTAGGTTCTGGGTGCT
GGTGACAGCGGTGAGAAGCCTGGCCCTTGGGGTTTGTAGAGGGCAGAGTGATAATGGGAGTCGT
GCGATGTCTTCTGGAAAGAAGTTTAATTTTGTGATATAGAGCTCTGACATTTTCCTAACATAAA
AGTGAACATCTGTCTTCATAAAACCAAGCTATCTCTTTTATATCAAGTCTGTTGTCAGCTCTGC
TCTGTTCACAATGTGGTGAGGAGAAACAGAATCTCTCCTCACCTTCTTTTTGAGACAGGGTCAC
ATGTTCTTGCTTCTACCTCCCAAGAGCTGGGATTACAAGCTTTTGCCACCTGCTCCGTTTCTGC
AGTGCTGGGCTTGAACCCAGAGCACGGCCTCCAACTGAGCTCCAGCAGGCCCTTCCCTGTGTTC
AGACCGTCTCTGGATTTCTAACTTGGTTCACCTGCAGTACCACAACTGAGAGTGATTTTGGCTA
ATATGTATTGGGAGAGACCAAGTGATAAATCCTGTGGGTGGATTATCTTGTTTTATCCCCTTAA
TAAACTCAAAACAACTGGGGAAAAGTGACTTGAGGATAAGGAAACGCAGATGAAGTGTGGGAGG
GGGTGGATTGATGCCACCAGATGCTACCCTGTGTGCCTGTGCTCACCATTAGTTCTTTCTGGGG
CTATGCTGGAAACTGATGGACAAGCCACAGAAGGAGGCAAACACCTAAATATAACCACAGTCGA
GTCCCATAGAGCAGATGACACCCGGTGTCCCCAACCTCAAGCACAGAGCTGGAGGTGAGGGACA
AGTGTGTCCGACTCCAAGTTCATTGTTCTTGAGTGATATCCTCAAGCTGTTTAAGTAAATGGCG
ACTCTTCCGTGCTCTTCCCTACCCTCCCCTGTCTTGTTTTGGCCTAGTGGTTTTTTTTTTTTTT
TTAATGTAAGTTTTATAAAAAATACATTCTTTCCCCTTCAAATTCATGCTGTGTTTATTTTTCT
GCCTTTCTTCAAATAATTGTGTATCTGTGTGCATGTGCAGAATTTTAAAGCACTTGGGTCCTCC
TTTTTCACATGTATAGTTTGTTTTGGCTTGGTTTTCCAAAAATAACATTTCTCTGTGTAGCCCC
GGCTGTCCTGGAACTCACACTGTAGACAAGGCTGGCCTCAAACTCCAAGATCCCCCTTCCAAGT
GCTGGGACTAAAGGTGTGCGCCACCAGCGTCAGGACACATGTAAAGTTTTGCCAGAAATTTCCT
TAAATTTTGTTGAGATGAACAAAGATAATTAGAGATTCTGTACTGAATTTGAATTTGTGTGTGT
TTTGATAAAGCTTAGATTTTTTATAAGAGTTTTCAGTTGTTGTTGCTGTCCATTAAAATCAGCC
TGTAGTTTGGG

hide sequence

RefSeq Acc Id:

XM_017594896 ⟹ XP_017450385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,495,577 - 133,537,770 (-)	NCBI
mRatBN7.2	7	131,616,777 - 131,658,995 (-)	NCBI
Rnor_6.0	7	142,138,836 - 142,181,036 (-)	NCBI

Sequence:

show sequence

TGGTTGGCGCTGGGGGTTTGCGGCGGAGTCTGCGCCGAACTTTCGCTGTCCACGCTTCCAGGCG
GTCGTGGGGGACTAAGGAGGGCGTGGGGACTGCTCCGCAGAACCCGGGAGTTACAGTGCGCGCC
TTTGTACCGGAGCCGGCGCCTGCTGGGGCAGGGAAGGAGCCGGAATGGCCTGGGCTCTGAAGCT
GCCGCTAGCTGACGAAGTGATCGAGTCGGGGCTGGTGCAGGACTTTGATGCTAGCCTGTCGGGC
ATTGGCCAGGAGCTGGGAGCTGGTGCTTATAGTATGAGTGATGTCCTTGCATTGCCTATTTTTA
AGCAAGAAGAGTCAAGTTTGCCTCCTGAAAATGAGAACGAGATCCTGCCTTTTCAGTACGTCCT
CTGTGCCGCCACCTCGCCAGCAGTGAAGCTCCACGATGAGACCCTGACCTACCTCAATCAAGGA
CAGTCTTATGAAATCCGAATGCTAGACAATAGAAAACTGGGAGAACTACCGGAAATCAACGGCA
AGTTAGTGAAGAGCATCTTCCGTGTAGTGTTCCACGACAGGAGACTGCAGTACACTGAGCACCA
GCAGCTGGAGGGCTGGAGGTGGAACCGGCCAGGAGACAGGATACTGGACATCGATATCCCAATG
TCTGTGGGTGTAATTGATCCCAGGGCCAATCCTACCCAGCTAAACACAGTGGAGTTCCTGTGGG
ACCCTGCAAAGAGGACATCTGTGTTTATTCAGGTGCACTGCATCAGCACTGAGTTCACTATGAG
GAAGCACGGTGGGGAAAAGGGGGTGCCCTTCCGAGTGCAGATCGATACCTTCAAGGAGAACGAG
AATGGAGAGTACACGGAGCACTTGCACTCGGCCAGCTGCCAGATCAAAGTCTTCAAGCCTAAAG
GTGCAGACAGAAAACAAAAGATAGATAGAGAGAAGATGGAGAAACGGACGCCCCATGAAAAGGA
GAAATACCAGCCTTCTTATGAGACAACCATACTCACAGAGTGTTCTCCGTGGCCTGAGATCACC
TACGTCAGCAATTCCCCATCGCCTGGCTTCAACAGCTCCCACAGCAGTTTCTCTCTTGGGGAAG
GAAACGGCTCGCCCAACCACCAGCCAGAGCCACCCCCTCCAGTCACGGACAACCTCTTGCCAAC
AACCACGCCTCAGGAAGCCCAGCAGTGGCTGCATCGAAACCGGTTTTCCACGTTCACGAGGCTT
TTCACCAACTTCTCAGGGGCAGACTTACTGAAACTAACTAGAGATGACGTGATCCAAATCTGTG
GCCCTGCAGATGGAATCCGGCTCTTCAACGCATTGAAAGGCCGGATGGTGCGTCCAAGGCTGAC
CATTTATGTCTGTCAGGAGTCGTTGCAGTTGAGGGAGCAGCCACAGCAGCCGCAGCCGCAGCAG
AAGCAGGAGGACGGAGATTCAAATGTGTACCATGCTATCTATCTAGAGGAGCTGACAGCTGTTG
AATTAACAGAAAAAATTGCTCAGCTTTTCAGTATTTCTCCTCAGCAGATCAGCCAGATTTACAA
GCAAGGGCCGACCGGAATCCATGTGCTCATCAGCGATGAGATGGTACAGAACTTTCAGGAAGAA
GCCTGCTTTATTCTGGACACAATGGAAGCGGAAACCAGTGATAGCTATCATGTCATTCTCAAGT
AGGACAAGCCTCTCACATTCGATGGCTGCCGCTGCCTTCACCTCCGACGACTGCCCTTTTGAAG
GGGACATGACTGGAGATTAAAGGTCTTCAAGAACCTGGCACATCTGAATGTTGGGGAGGGGGGT
GTCCAGTGCAGGGCGAGCAGGCCCTAAAGTGGAATCCCAGACCCTTGTATTGGCCCCTGCTGTA
TGACGTCTTCAGATCACTGGCCAGACGTGGAGTTCAGTGTTTCCCTAGGTTCTGGGTGCTGGTG
ACAGCGGTGAGAAGCCTGGCCCTTGGGGTTTGTAGAGGGCAGAGTGATAATGGGAGTCGTGCGA
TGTCTTCTGGAAAGAAGTTTAATTTTGTGATATAGAGCTCTGACATTTTCCTAACATAAAAGTG
AACATCTGTCTTCATAAAACCAAGCTATCTCTTTTATATCAAGTCTGTTGTCAGCTCTGCTCTG
TTCACAATGTGGTGAGGAGAAACAGAATCTCTCCTCACCTTCTTTTTGAGACAGGGTCACATGT
TCTTGCTTCTACCTCCCAAGAGCTGGGATTACAAGCTTTTGCCACCTGCTCCGTTTCTGCAGTG
CTGGGCTTGAACCCAGAGCACGGCCTCCAACTGAGCTCCAGCAGGCCCTTCCCTGTGTTCAGAC
CGTCTCTGGATTTCTAACTTGGTTCACCTGCAGTACCACAACTGAGAGTGATTTTGGCTAATAT
GTATTGGGAGAGACCAAGTGATAAATCCTGTGGGTGGATTATCTTGTTTTATCCCCTTAATAAA
CTCAAAACAACTGGGGAAAAGTGACTTGAGGATAAGGAAACGCAGATGAAGTGTGGGAGGGGGT
GGATTGATGCCACCAGATGCTACCCTGTGTGCCTGTGCTCACCATTAGTTCTTTCTGGGGCTAT
GCTGGAAACTGATGGACAAGCCACAGAAGGAGGCAAACACCTAAATATAACCACAGTCGAGTCC
CATAGAGCAGATGACACCCGGTGTCCCCAACCTCAAGCACAGAGCTGGAGGTGAGGGACAAGTG
TGTCCGACTCCAAGTTCATTGTTCTTGAGTGATATCCTCAAGCTGTTTAAGTAAATGGCGACTC
TTCCGTGCTCTTCCCTACCCTCCCCTGTCTTGTTTTGGCCTAGTGGTTTTTTTTTTTTTTTTAA
TGTAAGTTTTATAAAAAATACATTCTTTCCCCTTCAAATTCATGCTGTGTTTATTTTTCTGCCT
TTCTTCAAATAATTGTGTATCTGTGTGCATGTGCAGAATTTTAAAGCACTTGGGTCCTCCTTTT
TCACATGTATAGTTTGTTTTGGCTTGGTTTTCCAAAAATAACATTTCTCTGTGTAGCCCCGGCT
GTCCTGGAACTCACACTGTAGACAAGGCTGGCCTCAAACTCCAAGATCCCCCTTCCAAGTGCTG
GGACTAAAGGTGTGCGCCACCAGCGTCAGGACACATGTAAAGTTTTGCCAGAAATTTCCTTAAA
TTTTGTTGAGATGAACAAAGATAATTAGAGATTCTGTACTGAATTTGAATTTGTGTGTGTTTTG
ATAAAGCTTAGATTTTTTATAAGAGTTTTCAGTTGTTGTTGCTGTCCATTAAAATCAGCCTGTA
GTTTGGG

hide sequence

RefSeq Acc Id:

XM_063263676 ⟹ XP_063119746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,506,683 - 133,537,623 (-)	NCBI

RefSeq Acc Id:

XR_010052986

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,504,039 - 133,537,622 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128186	(Get FASTA)	NCBI Sequence Viewer
	XP_006242403	(Get FASTA)	NCBI Sequence Viewer
	XP_017450384	(Get FASTA)	NCBI Sequence Viewer
	XP_017450385	(Get FASTA)	NCBI Sequence Viewer
	XP_063119746	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68176	(Get FASTA)	NCBI Sequence Viewer
	EDL86940	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037251
	ENSRNOP00000037251.5
	ENSRNOP00000068740
	ENSRNOP00000068740.1
	ENSRNOP00000091135
	ENSRNOP00000091135.1

RefSeq Acc Id:

NP_001128186 ⟸ NM_001134714

- UniProtKB:

G3V969 (UniProtKB/TrEMBL), B4F788 (UniProtKB/TrEMBL), A0A8I6AB07 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPENENEI
LPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRR
LQYTEHQQLEGWRWNRPGDRILDIDIPMSVGVIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCI
STEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGADRKQKIDREKMEK
RTPHEKEKYQPSYETTILTECSPWPEITYVSNSPSPGFNSSHSSFSLGEGNGSPNHQPEPPPPV
TDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSGADLLKLTRDDVIQICGPADGIRLFNALKGR
MVRPRLTIYVCQESLQLREQPQQPQPQQKQEDGDSNVYHAIYLEELTAVELTEKIAQLFSISPQ
QISQIYKQGPTGIHVLISDEMVQNFQEEACFILDTMEAETSDSYHVILK

hide sequence

RefSeq Acc Id:	XP_006242403 ⟸ XM_006242341
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTJ9 (UniProtKB/TrEMBL), A6KCK2 (UniProtKB/TrEMBL), A0A8I6AB07 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPENENEI LPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRR LQYTEHQQLEGWRWNRPGDRILDIDIPMSVGVIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCI STEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGADRKQKIDREKMEK RTPHEKEKYQPSYETTILTECSPWPEITYVSNSPSPGFNSSHSSFSLGEGNGSPNHQPEPPPPV TDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSGADLLKLTRDDVIQICGPADGIRLFNALKGR MVRPRLTIYVCQESLQLREQPQQPQPQQKQEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFS ISPQQISQIYKQGPTGIHVLISDEMVQNFQEEACFILDTMEAETSDSYHVILK hide sequence

RefSeq Acc Id:	XP_017450385 ⟸ XM_017594896
- Peptide Label:	isoform X2
- UniProtKB:	G3V969 (UniProtKB/TrEMBL), B4F788 (UniProtKB/TrEMBL), A0A8I6AB07 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPENENEI LPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRR LQYTEHQQLEGWRWNRPGDRILDIDIPMSVGVIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCI STEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGADRKQKIDREKMEK RTPHEKEKYQPSYETTILTECSPWPEITYVSNSPSPGFNSSHSSFSLGEGNGSPNHQPEPPPPV TDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSGADLLKLTRDDVIQICGPADGIRLFNALKGR MVRPRLTIYVCQESLQLREQPQQPQPQQKQEDGDSNVYHAIYLEELTAVELTEKIAQLFSISPQ QISQIYKQGPTGIHVLISDEMVQNFQEEACFILDTMEAETSDSYHVILK hide sequence

RefSeq Acc Id:	XP_017450384 ⟸ XM_017594895
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTJ9 (UniProtKB/TrEMBL), A6KCK2 (UniProtKB/TrEMBL), A0A8I6AB07 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPENENEI LPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRR LQYTEHQQLEGWRWNRPGDRILDIDIPMSVGVIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCI STEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGADRKQKIDREKMEK RTPHEKEKYQPSYETTILTECSPWPEITYVSNSPSPGFNSSHSSFSLGEGNGSPNHQPEPPPPV TDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSGADLLKLTRDDVIQICGPADGIRLFNALKGR MVRPRLTIYVCQESLQLREQPQQPQPQQKQEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFS ISPQQISQIYKQGPTGIHVLISDEMVQNFQEEACFILDTMEAETSDSYHVILK hide sequence

RefSeq Acc Id:

ENSRNOP00000068740 ⟸ ENSRNOT00000087632

RefSeq Acc Id:

ENSRNOP00000037251 ⟸ ENSRNOT00000037447

RefSeq Acc Id:

ENSRNOP00000091135 ⟸ ENSRNOT00000117066

RefSeq Acc Id:	XP_063119746 ⟸ XM_063263676
- Peptide Label:	isoform X3

Protein Domains

Grh/CP2 DB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JTJ9-F1-model_v2	AlphaFold	A0A0G2JTJ9	1-501	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695660

Promoter ID:

EPDNEW_R6183

Type:

multiple initiation site

Name:

Tfcp2_1

Description:

transcription factor CP2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6184

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	142,180,773 - 142,180,833	EPDNEW

RGD ID:

13695670

Promoter ID:

EPDNEW_R6184

Type:

multiple initiation site

Name:

Tfcp2_2

Description:

transcription factor CP2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6183

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	142,180,983 - 142,181,043	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306738	AgrOrtholog
BioCyc Gene	G2FUF-32018	BioCyc
Ensembl Genes	ENSRNOG00000032395	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037447	ENTREZGENE
	ENSRNOT00000037447.7	UniProtKB/TrEMBL
	ENSRNOT00000087632.2	UniProtKB/TrEMBL
	ENSRNOT00000117066.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
InterPro	CP2	UniProtKB/TrEMBL
	SAM/pointed	UniProtKB/TrEMBL
	SAM_3	UniProtKB/TrEMBL
	TF_CP2-like	UniProtKB/TrEMBL
	TFCP2_SAM	UniProtKB/TrEMBL
KEGG Report	rno:315309	UniProtKB/TrEMBL
NCBI Gene	315309	ENTREZGENE
PANTHER	ALPHA-GLOBIN TRANSCRIPTION FACTOR CP2	UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR CP2	UniProtKB/TrEMBL
Pfam	CP2	UniProtKB/TrEMBL
	SAM_3	UniProtKB/TrEMBL
PhenoGen	Tfcp2	PhenoGen
PROSITE	GRH_CP2_DB	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000032395	RatGTEx
Superfamily-SCOP	SAM_homology	UniProtKB/TrEMBL
UniProt	A0A0G2JTJ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AB07	ENTREZGENE, UniProtKB/TrEMBL
	A6KCK2	ENTREZGENE, UniProtKB/TrEMBL
	B4F788	ENTREZGENE
	G3V969	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B4F788	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-16	Tfcp2	transcription factor CP2	Tcfcp2	transcription factor CP2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Tcfcp2	transcription factor CP2	Tcfcp2_predicted	transcription factor CP2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tcfcp2_predicted	transcription factor CP2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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