Tmem237 (transmembrane protein 237)

Gene: Tmem237 (transmembrane protein 237) Rattus norvegicus

Analyze

Symbol:

Tmem237

Name:

transmembrane protein 237

RGD ID:

1306705

Description:

Predicted to be involved in cilium assembly and regulation of Wnt signaling pathway. Predicted to be located in cone photoreceptor outer segment; photoreceptor connecting cilium; and rod photoreceptor outer segment. Predicted to be active in ciliary transition zone. Human ortholog(s) of this gene implicated in Joubert syndrome and Joubert syndrome 14. Orthologous to human TMEM237 (transmembrane protein 237); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Als2cr4; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4; LOC316412

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM237 (transmembrane protein 237)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Tmem237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem237 (transmembrane protein 237)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TMEM237 (transmembrane protein 237)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmem237 (transmembrane protein 237)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem237b (transmembrane protein 237b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem237a (transmembrane protein 237a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	jbts-14	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG14186	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tmem237	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,027,481 - 68,066,731 (-)	NCBI		GRCr8
mRatBN7.2	9	60,533,348 - 60,569,253 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	60,535,233 - 60,572,567 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	69,031,671 - 69,063,867 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	74,147,630 - 74,179,830 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	72,465,914 - 72,498,107 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	65,882,063 - 65,917,424 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	65,882,054 - 65,917,132 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	65,688,765 - 65,725,024 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	57,663,702 - 57,696,158 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	57,804,978 - 57,843,466 (-)	NCBI
Celera	9	57,975,459 - 58,006,983 (-)	NCBI		Celera
Cytogenetic Map	9	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune lymphoproliferative syndrome type 2B (ISO)

Autoimmune Lymphoproliferative Syndrome, Type V (ISO)

common variable immunodeficiency 1 (ISO)

genetic disease (ISO)

Hereditary Spastic Paralysis, Infantile Onset Ascending (ISO)

Joubert syndrome (ISO)

Joubert syndrome 1 (ISO)

Joubert syndrome 14 (ISO)

Meckel syndrome (ISO)

Neurodevelopmental Disorders (ISO)

Primary Pulmonary Hypertension, 1 (ISO)

Pulmonary Arterial Hypertension (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

folic acid (ISO)

FR900359 (ISO)

indometacin (ISO)

inulin (ISO)

L-methionine (ISO)

lead(0) (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IBA,ISO)

regulation of Wnt signaling pathway (ISO)

Cellular Component

ciliary transition zone (IBA,ISO)

cone photoreceptor outer segment (ISO)

membrane (IEA)

photoreceptor connecting cilium (ISO)

rod photoreceptor outer segment (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	TMEM237 is mutated in individuals with a Joubert syndrome related disorder and expands the role of the TMEM family at the ciliary transition zone.	Huang L, etal., Am J Hum Genet. 2011 Dec 9;89(6):713-30. doi: 10.1016/j.ajhg.2011.11.005.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19946888	PMID:20375344

Genomics

Comparative Map Data

Tmem237
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,027,481 - 68,066,731 (-)	NCBI		GRCr8
mRatBN7.2	9	60,533,348 - 60,569,253 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	60,535,233 - 60,572,567 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	69,031,671 - 69,063,867 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	74,147,630 - 74,179,830 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	72,465,914 - 72,498,107 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	65,882,063 - 65,917,424 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	65,882,054 - 65,917,132 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	65,688,765 - 65,725,024 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	57,663,702 - 57,696,158 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	57,804,978 - 57,843,466 (-)	NCBI
Celera	9	57,975,459 - 58,006,983 (-)	NCBI		Celera
Cytogenetic Map	9	q31	NCBI

TMEM237
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	201,620,186 - 201,643,503 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	201,620,184 - 201,643,570 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	202,484,909 - 202,508,226 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	202,193,152 - 202,216,469 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	202,313,928 - 202,333,173	NCBI
Celera	2	196,236,809 - 196,260,126 (-)	NCBI		Celera
Cytogenetic Map	2	q33.1	NCBI
HuRef	2	194,333,023 - 194,356,370 (-)	NCBI		HuRef
CHM1_1	2	202,491,420 - 202,514,771 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	202,100,839 - 202,124,155 (-)	NCBI		T2T-CHM13v2.0

Tmem237
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	59,139,743 - 59,159,567 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	59,139,749 - 59,159,567 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	59,100,584 - 59,120,422 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	59,100,590 - 59,120,408 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	59,157,437 - 59,176,940 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	59,045,139 - 59,064,642 (-)	NCBI		MGSCv36	mm8
Celera	1	59,616,880 - 59,636,334 (-)	NCBI		Celera
Cytogenetic Map	1	C1.3	NCBI
cM Map	1	29.2	NCBI

Tmem237
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	148,183 - 172,386 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	148,181 - 173,350 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM237
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	104,242,783 - 104,266,015 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	104,257,783 - 104,281,108 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	88,873,362 - 88,896,689 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	207,028,061 - 207,051,388 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	207,028,061 - 207,051,206 (-)	Ensembl	panpan1.1		panPan2

TMEM237
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	10,691,010 - 10,709,632 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	10,691,743 - 10,709,606 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	11,574,959 - 11,593,576 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	10,596,157 - 10,614,774 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	10,596,158 - 10,614,800 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	10,577,092 - 10,595,709 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	10,555,642 - 10,574,273 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	10,549,365 - 10,567,982 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem237
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	158,902,214 - 158,921,881 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	869,238 - 891,283 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	872,368 - 892,185 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM237
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	105,252,479 - 105,276,970 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	105,255,485 - 105,276,624 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM237
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	87,307,141 - 87,326,618 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	87,307,903 - 87,327,299 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	112,083,373 - 112,106,810 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem237
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624899	206,878 - 238,737 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624899	209,810 - 239,404 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem237
201 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	389
Count of miRNA genes:	219
Interacting mature miRNAs:	253
Transcripts:	ENSRNOT00000031866
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	23754024	61381613	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	49968546	71098346	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat

Markers in Region

RH140025

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	60,536,635 - 60,536,840 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	65,885,351 - 65,885,555	NCBI	Rnor6.0
Rnor_5.0	9	65,692,048 - 65,692,252	UniSTS	Rnor5.0
RGSC_v3.4	9	57,663,807 - 57,664,011	UniSTS	RGSC3.4
Celera	9	57,975,564 - 57,975,768	UniSTS
RH 3.4 Map	9	494.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

AI105082

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	60,569,412 - 60,569,513 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	65,917,596 - 65,917,696	NCBI	Rnor6.0
Rnor_5.0	9	65,724,829 - 65,724,929	UniSTS	Rnor5.0
RGSC_v3.4	9	57,696,622 - 57,696,722	UniSTS	RGSC3.4
Celera	9	58,007,447 - 58,007,547	UniSTS
RH 3.4 Map	9	475.59	UniSTS
Cytogenetic Map	9	q31	UniSTS

AI176040

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	60,568,442 - 60,568,602 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	65,916,626 - 65,916,785	NCBI	Rnor6.0
Rnor_5.0	9	65,723,859 - 65,724,018	UniSTS	Rnor5.0
RGSC_v3.4	9	57,695,652 - 57,695,811	UniSTS	RGSC3.4
Celera	9	58,006,477 - 58,006,636	UniSTS
RH 3.4 Map	9	494.69	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									70	14	31	4
Low	3	43	57	41	19	41	8	11	4	21	10	7	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000031866 ⟹ ENSRNOP00000036108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	60,536,531 - 60,568,949 (-)	Ensembl
Rnor_6.0 Ensembl	9	65,885,246 - 65,917,132 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077483 ⟹ ENSRNOP00000074197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	60,535,233 - 60,568,591 (-)	Ensembl
Rnor_6.0 Ensembl	9	65,882,054 - 65,916,949 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119394 ⟹ ENSRNOP00000078512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	60,535,233 - 60,572,567 (-)	Ensembl

RefSeq Acc Id:

NM_001108220 ⟹ NP_001101690

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,030,664 - 68,063,082 (-)	NCBI
mRatBN7.2	9	60,536,531 - 60,568,949 (-)	NCBI
Rnor_6.0	9	65,885,246 - 65,917,132 (-)	NCBI
Rnor_5.0	9	65,688,765 - 65,725,024 (-)	NCBI
RGSC_v3.4	9	57,663,702 - 57,696,158 (-)	RGD
Celera	9	57,975,459 - 58,006,983 (-)	RGD

Sequence:

show sequence

GACACCTCTGGGCGGCTCTCGGCTGCAGGCAAAGCGGGAGAGGAGGCTGTTTCCGGTGGGAGCT
TGAATCCTGGTCTGGTCAAGCGGTGCTCATCCCCACGCAAATCGTGATGACCTCCCGGGAAACT
GTGGGTGAACCCCCTCCGCTCCTGGGGACGTCGACATACGCTGAGCGTCCTCCGCGAGCACTTC
CACCTGTGCCAAGATGAGATTCCACTTAGTCATCCTAAGAAAAAGAAATCCAGAACAAAGAGCA
CACCAGCTCCTGCTTCTTCAGAAGGCCTTGCTGAGCCCGTTGTTAACAGGAGGGCTGAGGGCAG
TGAGCCACCAGCTGCAGAACTCAAGGAGTACCCAGAGGCTCCTGTTCAAAGGAAACAGAAGAAG
ATAAGACCACCTCCTGAGTTGGAGACTTCCTTCACTGAAAAGCCATCCAGTCCGTCTTTACTAC
GGAATGAAAACGGCATGGACGTGGAGCCTCGTGAGGAAGTGGTTATTCCAAAACCTCGAAGGAA
GGCGAAGAAAATGCAGCCAGCGGAACCACAGTATGCCAGCGAGCTAGGGGTAGAAGATGAAGAC
GTAATTACGGATGAGCAGAGCACTCTAGAACACCACTCTAGGTTCACCGCACCCACCGGAGTCA
GCCAGCCTGTTGGCAAAATATTTGTGGAAAAAAGCCGGAGATTTCAGGCGGCGGACCGTTCGGA
GTTGATAAAGACCACAGAAAACGTAGATGTGTCAATGGACATGAAGCCATCTTGGACTACCCGC
GATGTGGCACTTTCCGTGCACCGAGCTTTCAGGATGATCGGCCTCTTCTCTCACGGCTTCTTGG
CTGGCTGTGCTGTGTGGAATATTGTTGTGATCTGTGTTCTCGCGGGAGACCAGTTCTCTAATGT
CTCCAACCTTCTGCAGCAGTACAAGCCCTTGGCATATCCCTTCCAGAGCCTTCTTTACTTGCTT
TTGGCTCTAAGTACAGTTTCAGCATTTGACAGGATCGACTTTGCTAAAACCTCAGTAGCAATCC
GGAACTTTTTGGCCCTGGAGCCAACAGCTTTAGCCTCTTTCTTGTATTTTACTGCTCTAACACT
ATCTCTGAGTCAGCAAATGACAAGTGACAGAATCTACCTTTACGAACCTTCTGTCAATGGAAGC
CTCTGGCCAGCAGAAGTGGAGGAACCGGTTCTCATGCCATGGGTCATAGTGAATCTGGTGGTGG
CGCTTCTGGTTGGATTAGCCTGGCTCTTTTTGTCTTACAGGCCAGGCATGGATCTTAGTGAAGA
GTTGATGTTCTTTTCTGATGTGGACGAGTACCCCGAGAGAGGAGTCAAAGCGTCTCCGTAGCGC
CGGCCGGCTCCGTCCCTGCAGTGACGGCCTGCGTTCCCCACTCCCGTTTTTAAGTGTATTTTTA
TAAGATACATGTATTTATAATCGAGCTTTTGTTACATAATGCTGAAATGCTACTGTAGATTGTA
AATTATATCTGGTCTTTATACCAAATATTAGGGTCTTTATTATTTTCACCTTAGTGACACAGGA
GATAATGAGCTAAAACAAACAAACAAACAAACAAAAAAACACAGCAGGTGATGTGTTTGTTTCC
TGTCCTTTCAAATTTGCAAAATTCATGATTATTATTAGCTAAAGAGCACCAATTTAGAAAAGCC
TTAACCTCAGTGTTATAAAATATACATCAAGTTTAAATGTAAATTTAGTGAATGGGGAAGATGG
AAAAATGTCTTCATTTTATATTTTTGATGTCTTCTTATGGAACACTGCAGGATGTGATTTGTTT
TCTCTGAATCTGGCTAGTGTTATAGCTCATATAATAATTATTTGCCATTTGAATTGAAAGATGC
TTTATAGCTAATAAAACAGAAATACCTATCTTTGA

hide sequence

RefSeq Acc Id:

XM_006244975 ⟹ XP_006245037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,027,481 - 68,063,876 (-)	NCBI
mRatBN7.2	9	60,533,348 - 60,569,062 (-)	NCBI
Rnor_6.0	9	65,882,063 - 65,917,094 (-)	NCBI
Rnor_5.0	9	65,688,765 - 65,725,024 (-)	NCBI

Sequence:

show sequence

AGAGGAGGCTGTTTCCGGTGGGAGCTTGAATCCTGGTCTGGTCAAGCGGTGCTCATCCCCACGC
AAATCGTGATGACCTCCCGGGAAACTGTGGGTGAACCCCCTCCGCTCCTGGGGACGTCGACATA
CGCTGAGCGTCCTCCGCGAGCACTTCCACCTGTGCCAAGTGCTATCCAAGATGAGATTCCACTT
AGTCATCCTAAGAAAAAGAAATCCAGAACAAAGAGCACACCAGCTCCTGCTTCTTCAGAAGGCC
TTGCTGAGCCCGTTGTTAACAGGAGGGCTGAGGGCAGTGAGCCACCAGCTGCAGAACTCAAGGA
GTACCCAGAGGCTCCTGTTCAAAGGAAACAGAAGAAGATAAGACCACCTCCTGAGTTGGAGACT
TCCTTCACTGAAAAGCCATCCAGTCCGTCTTTACTACGGAATGAAAACGGCATGGACGTGGAGC
CTCGTGAGGAAGTGGTTATTCCAAAACCTCGAAGGAAGGCGAAGAAAATGCAGCCAGCGGAACC
ACAGTATGCCAGCGAGCTAGGGGTAGAAGATGAAGACGTAATTACGGATGAGCAGAGCACTCTA
GAACACCACTCTAGGTTCACCGCACCCACCGGAGTCAGCCAGCCTGTTGGCAAAATATTTGTGG
AAAAAAGCCGGAGATTTCAGGCGGCGGACCGTTCGGAGTTGATAAAGACCACAGAAAACGTAGA
TGTGTCAATGGACATGAAGCCATCTTGGACTACCCGCGATGTGGCACTTTCCGTGCACCGAGCT
TTCAGGATGATCGGCCTCTTCTCTCACGGCTTCTTGGCTGGCTGTGCTGTGTGGAATATTGTTG
TGATCTGTGTTCTCGCGGGAGACCAGTTCTCTAATGTCTCCAACCTTCTGCAGCAGTACAAGCC
CTTGGCATATCCCTTCCAGAGCCTTCTTTACTTGCTTTTGGCTCTAAGTACAGTTTCAGCATTT
GACAGGATCGACTTTGCTAAAACCTCAGTAGCAATCCGGAACTTTTTGGCCCTGGAGCCAACAG
CTTTAGCCTCTTTCTTGTATTTTACTGCTCTAACACTATCTCTGAGTCAGCAAATGACAAGTGA
CAGAATCTACCTTTACGAACCTTCTGTCAATGGAAGCCTCTGGCCAGCAGAAGTGGAGGAACCG
GTTCTCATGCCATGGGTCATAGTGAATCTGGTGGTGGCGCTTCTGGTTGGATTAGCCTGGCTCT
TTTTGTCTTACAGGCCAGGCATGGATCTTAGTGAAGAGTTGATGTTCTTTTCTGATGTGGACGA
GTACCCCGAGAGAGGAGTCAAAGCGTCTCCGTAGCGCCGGCCGGCTCCGTCCCTGCAGTGACGG
CCTGCGTTCCCCACTCCCGTTTTTAAGTGTATTTTTATAAGATACATGTATTTATAATCGAGCT
TTTGTTACATAATGCTGAAATGCTACTGTAGATTGTAAATTATATCTGGTCTTTATACCAAATA
TTAGGGTCTTTATTATTTTCACCTTAGTGACACAGGAGATAATGAGCTAAAACAAACAAACAAA
CAAACAAAAAAACACAGCAGGTGATGTGTTTGTTTCCTGTCCTTTCAAATTTGCAAAATTCATG
ATTATTATTAGCTAAAGAGCACCAATTTAGAAAAGCCTTAACCTCAGTGTTATAAAATATACAT
CAAGTTTAAATGTAAATTTAGTGAATGGGGAAGATGGAAAAATGTCTTCATTTTATATTTTTGA
TGTCTTCTTATGGAACACTGCAGGATGTGATTTGTTTTCTCTGAATCTGGCTAGTGTTATAGCT
CATATAATAATTATTTGCCATTTGAATTGAAAGATGCTTTATAGCTAATAAAACAGAAATACCT
ATCTTTGAGAGGCTTTAAAAACTGAAGATTTTTCCTTTTTAAAATCTGCACCAGTTATTCTCCT
GTCTGCTTGCCCCTCAGAATCATGTAGGGAGCTTTGGGAGAATGGCTCACACCTCCTGTAATCT
AGGGCGTGGGAGGCAGAAGCAGGGGATCACGAGGTCATTGCCACCCTCAGCTACTCAGCGAGTT
TGAGTCCAGCCTGAGAGACATGAGAGCCCATTTCTGAAACCAAAAGCAGCAACAACGAAGTCAG
ACAGCAAGGAGAAGCTGGACCAATAGCCAGCTCAGGCGTGTGATCTGGGGCTGACCTCTGAGTC
TCTGCTCTGACTTCGTACAGTTGATGGATTTCAAACCTGGGGTTTTATTCTGGAAGGCAGGGAC
TCTACCACTGAGCCCCCTCCCCAGTCCTTCTGTTTCTGCTAGTTTTCTGAGAAAGGGTCTTGCG
CTGTCTCTCGGACTGACCTTAAACTCTTGATCCTCCTTCCCCAGCCTCTTGAATGCTGCGATCA
AGGGGTTCTTCTTGTGAGTCACGGGAAACATGAATGGAAGGTCACCGTCCTCATTTTCACTCTC
TATCGGATATCTCAGGTTTTTGGAAAATTCCACTCTTGGGGTGGGTTCTGCGTAGAAAAAAAAC
GCTGTCCTAACACATTTCAAATGGTTCTTCAGCTGGTGTCTGTGAGCTTAAGTCCGACAGCTTA
AGTCAGTGAGAAGACCTGCTAGAAGAGAAGGTGACTCAAAGGCTGTTGGACACATCCCCGAAAC
TACTGGGCCTCCCAGATTAGCACACAACTGAATGTTGTATAGAAGATGATGGACGGATTGTTAA
GTGAGGTGGCTGTTCTTGTCTCTGCAGCACCATAGTGAAACTGTCCTTTACTATCTGTAAGGCC
CGAGTTGCTGAACGGGTATTTACCCGTGTTATAGAATTATAAATACATGCAGTTCTGACATTCC
TGCCAGTTTTAGTCTTCACTGATTAGCGGTGATTCTCATGTCGGCAGCAGCTGGAAGTGTAGGA
GTTCATAGTCTGTTTTGCAGCTTCTGCAGGGATGTGCTGAAGTTGACCATATCTGAATTGTGTC
ATCAAGGAGAAATGGGGAAAGGTGCTCTCAGTGTGGGGTTGTTTCTGACTGAGTCATGGCCCCT
CTAATTCCTGGAGTCCACGATAATATGACTTTTCACATCAAAAGTGGTTTTGCAGATGTGAGTA
GGGATAAGAGCCCTGAAATGGGGAGAGTATCCTCCATTGTGAGGTGGCTGATGTTTTCTAAAGG
ATTAAAGAAACCCTTTTATATTTCATCAAAGAGCTGTTGGTCAGTTGTGATATTTCTGCTTATA
AAGGAGGAGGGTCCTTTAGTGACCCGAAAGGCTGGAAACAGACTCTTACTCAGTAGCCAACAGA
AAGGCTGGAAACAGACTCTTACCCAGTAGCCAACAGAGATGGAATTCATGAATTCTATCAAGGA
CAAGCAAGGAATCAGTCCTCCAGGAAGTGGTACCGTCCCTGTGATACTTTGGTTTGGATTCAGT
TATATCTGTACCAGACTTGAAATACAGACAGGTACAGCTTCGTATTAGCCAAGTGGCTAGGTTT
GCTCCAAATGGCATGGAGAATGCAGCCTTGCACTGCGGCTGGAGGAAGCTGACTGTTAATAACG
TCTTAACTGACAGTGGGAGAGTGATCTTTGAATTCTGTCAGGTCTGAGAGAATGACGGAATCTA
CAAGTCCTTCACCACCACAACTCAACAGTGCACGTCAAAGATTCTTTTGACCGTGATTAGGAAA
GTTCTTTACAAGAGCCCCATTGGTTAATTCATGGCCGATTGCTACGATGAGAATATCAGACCTG
TCAAATTGGAATTTTTGAGGATGAAGCCTAGGTTTGTGGGAGCAGCAGGAAGAGAGGATGAGGC
TCTTAATCTACTTAGATCTGGGAATGGAAGGACCTAGAAAAGGTTTGTAGGTGAAGTTAGATGT
AAGCAGAGGCTTTATAAAATGGATCATTTCCTTGTAGAGATGAGTACCAAAAAACCAGAAAGGT
GAATGAGCTTATAACTTGAAAAAACCTTTCATTATAGTCATCATCATCAGTGTGTATAAATGAT
AGGGAAGGGTTTTGTGCCACAGACTCAATATGGAGGTCAAAGGACAACTCTGTGCAGTTGGTTC
TCTCCTTCGTCATTTATATGGGTTCCGGGTATCAAACTTGGGTCGTCAGGCTCGTGCAAGGATG
TTTGTCTGCTGAGCCAGCTCACCAGTTCAGCTCGACATTTAAAAAAATAAAAAAGTTTTATTTT
TATTTACATGAATGTGTGTCCACGCCACATGCATGTGGGTGCCTCTGCAGGCTAGAAGTGTTAG
ATTCCCAGAACTACAAGAAGTTGTCAGCTGTCCAGGGTGGGTACTGAGTACTGAACTTGTCCTC
TGAGACAGCTGCAGATGTTCTTGACCACGCCCAGCATCATCACTGGAGCACGTTTTGGAGATCT
TTTAAAAACACAGAGTTGTGAGATATCAGGTTAGGCTTAATGTTAAACTTTTGAATGCCCCCAA
CTCTTTTTCTTTCAAAATCTTTTCAAGGGAAATTTATTCTAAGACTCGGGGGCATATCTCTAGG
AATGCACAGTAAGTATCATTAAAGCAACTAGAAAAAATAATTCCACGATATTTAAGATCCAGTT
CATTTTTAGAATTTTTCTAGTTGTCCCTCAGATGAAATTTGAGAGACCAAATCTACTTCATCTT
GGGTCTGGCCTCCATCTTAAAAAAAAAAAATCAAAAACAAAACAAAAACAGTCTGAGAACTTGA
CCTACAGCTGAATCCAAGGTGCACCCAAGTACTAGGAAGGGCCCTGGGGTTTGTCCTTGCCCGT
AGCCCAGAGTTACTCCCTAGATACTCCCTAGCAACAGTTAGTTAAGATCAGTCTGATTGTTTCA
GATGTACCTTCAGACTGTTTGTGATGGTATATGGTTTTGCTTCAGAGCCTGTCGGCTTACAGTC
ATTCTACTACTTGCTTGCCAGACTGGACAACCCCTCACTTGCTCCTACTTTCCTATAAAAACTT
ATCCTGTTGAGGGTTCAGGGCTGCTCTGCCTTCCCTTCCCATCCTGCTGTGTCAGGGTTGGGTT
GTAGGAGAGCCCAAGCCTGAGCTTGTAATAAAGAGACCCTAATGCTATTACATCA

hide sequence

RefSeq Acc Id:

XM_006244977 ⟹ XP_006245039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,027,481 - 68,066,731 (-)	NCBI
mRatBN7.2	9	60,533,348 - 60,568,712 (-)	NCBI
Rnor_6.0	9	65,882,063 - 65,916,804 (-)	NCBI
Rnor_5.0	9	65,688,765 - 65,725,024 (-)	NCBI

Sequence:

show sequence

GCGGGGCGGGCGGCCGCTGTTCTCTGTGCTCTACAGCCGTCCCTGGAGACGTGATGGGGAAGAA
GCAAGTGGTTAGCGAGCCTCAGCGTCCTCCGCGAGCACTTCCACCTGTGCCAAGTGCTATCCAA
GATGAGATTCCACTTAGTCATCCTAAGAAAAAGAAATCCAGAACAAAGAGCACACCAGCTCCTG
CTTCTTCAGAAGGCCTTGCTGAGCCCGTTGTTAACAGGAGGGCTGAGGGCAGTGAGCCACCAGC
TGCAGAACTCAAGGAGTACCCAGAGGCTCCTGTTCAAAGGAAACAGAAGAAGATAAGACCACCT
CCTGAGTTGGAGACTTCCTTCACTGAAAAGCCATCCAGTCCGTCTTTACTACGGAATGAAAACG
GCATGGACGTGGAGCCTCGTGAGGAAGTGGTTATTCCAAAACCTCGAAGGAAGGCGAAGAAAAT
GCAGCCAGCGGAACCACAGTATGCCAGCGAGCTAGGGGTAGAAGATGAAGACGTAATTACGGAT
GAGCAGAGCACTCTAGAACACCACTCTAGGTTCACCGCACCCACCGGAGTCAGCCAGCCTGTTG
GCAAAATATTTGTGGAAAAAAGCCGGAGATTTCAGGCGGCGGACCGTTCGGAGTTGATAAAGAC
CACAGAAAACGTAGATGTGTCAATGGACATGAAGCCATCTTGGACTACCCGCGATGTGGCACTT
TCCGTGCACCGAGCTTTCAGGATGATCGGCCTCTTCTCTCACGGCTTCTTGGCTGGCTGTGCTG
TGTGGAATATTGTTGTGATCTGTGTTCTCGCGGGAGACCAGTTCTCTAATGTCTCCAACCTTCT
GCAGCAGTACAAGCCCTTGGCATATCCCTTCCAGAGCCTTCTTTACTTGCTTTTGGCTCTAAGT
ACAGTTTCAGCATTTGACAGGATCGACTTTGCTAAAACCTCAGTAGCAATCCGGAACTTTTTGG
CCCTGGAGCCAACAGCTTTAGCCTCTTTCTTGTATTTTACTGCTCTAACACTATCTCTGAGTCA
GCAAATGACAAGTGACAGAATCTACCTTTACGAACCTTCTGTCAATGGAAGCCTCTGGCCAGCA
GAAGTGGAGGAACCGGTTCTCATGCCATGGGTCATAGTGAATCTGGTGGTGGCGCTTCTGGTTG
GATTAGCCTGGCTCTTTTTGTCTTACAGGCCAGGCATGGATCTTAGTGAAGAGTTGATGTTCTT
TTCTGATGTGGACGAGTACCCCGAGAGAGGAGTCAAAGCGTCTCCGTAGCGCCGGCCGGCTCCG
TCCCTGCAGTGACGGCCTGCGTTCCCCACTCCCGTTTTTAAGTGTATTTTTATAAGATACATGT
ATTTATAATCGAGCTTTTGTTACATAATGCTGAAATGCTACTGTAGATTGTAAATTATATCTGG
TCTTTATACCAAATATTAGGGTCTTTATTATTTTCACCTTAGTGACACAGGAGATAATGAGCTA
AAACAAACAAACAAACAAACAAAAAAACACAGCAGGTGATGTGTTTGTTTCCTGTCCTTTCAAA
TTTGCAAAATTCATGATTATTATTAGCTAAAGAGCACCAATTTAGAAAAGCCTTAACCTCAGTG
TTATAAAATATACATCAAGTTTAAATGTAAATTTAGTGAATGGGGAAGATGGAAAAATGTCTTC
ATTTTATATTTTTGATGTCTTCTTATGGAACACTGCAGGATGTGATTTGTTTTCTCTGAATCTG
GCTAGTGTTATAGCTCATATAATAATTATTTGCCATTTGAATTGAAAGATGCTTTATAGCTAAT
AAAACAGAAATACCTATCTTTGAGAGGCTTTAAAAACTGAAGATTTTTCCTTTTTAAAATCTGC
ACCAGTTATTCTCCTGTCTGCTTGCCCCTCAGAATCATGTAGGGAGCTTTGGGAGAATGGCTCA
CACCTCCTGTAATCTAGGGCGTGGGAGGCAGAAGCAGGGGATCACGAGGTCATTGCCACCCTCA
GCTACTCAGCGAGTTTGAGTCCAGCCTGAGAGACATGAGAGCCCATTTCTGAAACCAAAAGCAG
CAACAACGAAGTCAGACAGCAAGGAGAAGCTGGACCAATAGCCAGCTCAGGCGTGTGATCTGGG
GCTGACCTCTGAGTCTCTGCTCTGACTTCGTACAGTTGATGGATTTCAAACCTGGGGTTTTATT
CTGGAAGGCAGGGACTCTACCACTGAGCCCCCTCCCCAGTCCTTCTGTTTCTGCTAGTTTTCTG
AGAAAGGGTCTTGCGCTGTCTCTCGGACTGACCTTAAACTCTTGATCCTCCTTCCCCAGCCTCT
TGAATGCTGCGATCAAGGGGTTCTTCTTGTGAGTCACGGGAAACATGAATGGAAGGTCACCGTC
CTCATTTTCACTCTCTATCGGATATCTCAGGTTTTTGGAAAATTCCACTCTTGGGGTGGGTTCT
GCGTAGAAAAAAAACGCTGTCCTAACACATTTCAAATGGTTCTTCAGCTGGTGTCTGTGAGCTT
AAGTCCGACAGCTTAAGTCAGTGAGAAGACCTGCTAGAAGAGAAGGTGACTCAAAGGCTGTTGG
ACACATCCCCGAAACTACTGGGCCTCCCAGATTAGCACACAACTGAATGTTGTATAGAAGATGA
TGGACGGATTGTTAAGTGAGGTGGCTGTTCTTGTCTCTGCAGCACCATAGTGAAACTGTCCTTT
ACTATCTGTAAGGCCCGAGTTGCTGAACGGGTATTTACCCGTGTTATAGAATTATAAATACATG
CAGTTCTGACATTCCTGCCAGTTTTAGTCTTCACTGATTAGCGGTGATTCTCATGTCGGCAGCA
GCTGGAAGTGTAGGAGTTCATAGTCTGTTTTGCAGCTTCTGCAGGGATGTGCTGAAGTTGACCA
TATCTGAATTGTGTCATCAAGGAGAAATGGGGAAAGGTGCTCTCAGTGTGGGGTTGTTTCTGAC
TGAGTCATGGCCCCTCTAATTCCTGGAGTCCACGATAATATGACTTTTCACATCAAAAGTGGTT
TTGCAGATGTGAGTAGGGATAAGAGCCCTGAAATGGGGAGAGTATCCTCCATTGTGAGGTGGCT
GATGTTTTCTAAAGGATTAAAGAAACCCTTTTATATTTCATCAAAGAGCTGTTGGTCAGTTGTG
ATATTTCTGCTTATAAAGGAGGAGGGTCCTTTAGTGACCCGAAAGGCTGGAAACAGACTCTTAC
TCAGTAGCCAACAGAAAGGCTGGAAACAGACTCTTACCCAGTAGCCAACAGAGATGGAATTCAT
GAATTCTATCAAGGACAAGCAAGGAATCAGTCCTCCAGGAAGTGGTACCGTCCCTGTGATACTT
TGGTTTGGATTCAGTTATATCTGTACCAGACTTGAAATACAGACAGGTACAGCTTCGTATTAGC
CAAGTGGCTAGGTTTGCTCCAAATGGCATGGAGAATGCAGCCTTGCACTGCGGCTGGAGGAAGC
TGACTGTTAATAACGTCTTAACTGACAGTGGGAGAGTGATCTTTGAATTCTGTCAGGTCTGAGA
GAATGACGGAATCTACAAGTCCTTCACCACCACAACTCAACAGTGCACGTCAAAGATTCTTTTG
ACCGTGATTAGGAAAGTTCTTTACAAGAGCCCCATTGGTTAATTCATGGCCGATTGCTACGATG
AGAATATCAGACCTGTCAAATTGGAATTTTTGAGGATGAAGCCTAGGTTTGTGGGAGCAGCAGG
AAGAGAGGATGAGGCTCTTAATCTACTTAGATCTGGGAATGGAAGGACCTAGAAAAGGTTTGTA
GGTGAAGTTAGATGTAAGCAGAGGCTTTATAAAATGGATCATTTCCTTGTAGAGATGAGTACCA
AAAAACCAGAAAGGTGAATGAGCTTATAACTTGAAAAAACCTTTCATTATAGTCATCATCATCA
GTGTGTATAAATGATAGGGAAGGGTTTTGTGCCACAGACTCAATATGGAGGTCAAAGGACAACT
CTGTGCAGTTGGTTCTCTCCTTCGTCATTTATATGGGTTCCGGGTATCAAACTTGGGTCGTCAG
GCTCGTGCAAGGATGTTTGTCTGCTGAGCCAGCTCACCAGTTCAGCTCGACATTTAAAAAAATA
AAAAAGTTTTATTTTTATTTACATGAATGTGTGTCCACGCCACATGCATGTGGGTGCCTCTGCA
GGCTAGAAGTGTTAGATTCCCAGAACTACAAGAAGTTGTCAGCTGTCCAGGGTGGGTACTGAGT
ACTGAACTTGTCCTCTGAGACAGCTGCAGATGTTCTTGACCACGCCCAGCATCATCACTGGAGC
ACGTTTTGGAGATCTTTTAAAAACACAGAGTTGTGAGATATCAGGTTAGGCTTAATGTTAAACT
TTTGAATGCCCCCAACTCTTTTTCTTTCAAAATCTTTTCAAGGGAAATTTATTCTAAGACTCGG
GGGCATATCTCTAGGAATGCACAGTAAGTATCATTAAAGCAACTAGAAAAAATAATTCCACGAT
ATTTAAGATCCAGTTCATTTTTAGAATTTTTCTAGTTGTCCCTCAGATGAAATTTGAGAGACCA
AATCTACTTCATCTTGGGTCTGGCCTCCATCTTAAAAAAAAAAAATCAAAAACAAAACAAAAAC
AGTCTGAGAACTTGACCTACAGCTGAATCCAAGGTGCACCCAAGTACTAGGAAGGGCCCTGGGG
TTTGTCCTTGCCCGTAGCCCAGAGTTACTCCCTAGATACTCCCTAGCAACAGTTAGTTAAGATC
AGTCTGATTGTTTCAGATGTACCTTCAGACTGTTTGTGATGGTATATGGTTTTGCTTCAGAGCC
TGTCGGCTTACAGTCATTCTACTACTTGCTTGCCAGACTGGACAACCCCTCACTTGCTCCTACT
TTCCTATAAAAACTTATCCTGTTGAGGGTTCAGGGCTGCTCTGCCTTCCCTTCCCATCCTGCTG
TGTCAGGGTTGGGTTGTAGGAGAGCCCAAGCCTGAGCTTGTAATAAAGAGACCCTAATGCTATT
ACATCA

hide sequence

RefSeq Acc Id:

XM_039083614 ⟹ XP_038939542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,027,481 - 68,063,876 (-)	NCBI
mRatBN7.2	9	60,533,348 - 60,569,062 (-)	NCBI

RefSeq Acc Id:

XM_039083615 ⟹ XP_038939543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,034,382 - 68,063,876 (-)	NCBI
mRatBN7.2	9	60,540,249 - 60,569,062 (-)	NCBI

RefSeq Acc Id:

XM_039083616 ⟹ XP_038939544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,027,481 - 68,063,876 (-)	NCBI
mRatBN7.2	9	60,537,008 - 60,569,062 (-)	NCBI

RefSeq Acc Id:

XM_039083617 ⟹ XP_038939545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,027,481 - 68,063,876 (-)	NCBI
mRatBN7.2	9	60,537,016 - 60,569,062 (-)	NCBI

RefSeq Acc Id:

XM_063267179 ⟹ XP_063123249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,027,481 - 68,061,410 (-)	NCBI

RefSeq Acc Id:

XM_063267180 ⟹ XP_063123250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,041,974 - 68,063,876 (-)	NCBI

RefSeq Acc Id:

XR_005488910

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,031,248 - 68,063,876 (-)	NCBI
mRatBN7.2	9	60,533,348 - 60,569,062 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101690	(Get FASTA)	NCBI Sequence Viewer
	XP_006245037	(Get FASTA)	NCBI Sequence Viewer
	XP_006245039	(Get FASTA)	NCBI Sequence Viewer
	XP_038939542	(Get FASTA)	NCBI Sequence Viewer
	XP_038939543	(Get FASTA)	NCBI Sequence Viewer
	XP_038939544	(Get FASTA)	NCBI Sequence Viewer
	XP_038939545	(Get FASTA)	NCBI Sequence Viewer
	XP_063123249	(Get FASTA)	NCBI Sequence Viewer
	XP_063123250	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98961	(Get FASTA)	NCBI Sequence Viewer
	EDL98962	(Get FASTA)	NCBI Sequence Viewer
	EDL98963	(Get FASTA)	NCBI Sequence Viewer
	EDL98964	(Get FASTA)	NCBI Sequence Viewer
	EDL98965	(Get FASTA)	NCBI Sequence Viewer
	EDL98966	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000036108
	ENSRNOP00000036108.5
	ENSRNOP00000074197
	ENSRNOP00000074197.1
	ENSRNOP00000078512.1

RefSeq Acc Id:

NP_001101690 ⟸ NM_001108220

- UniProtKB:

A6IP94 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDVEPREEVVIPKPRRKAKKMQPAEPQYASELGVEDEDVITDEQSTLEHHSRFTAPTGVSQPVG
KIFVEKSRRFQAADRSELIKTTENVDVSMDMKPSWTTRDVALSVHRAFRMIGLFSHGFLAGCAV
WNIVVICVLAGDQFSNVSNLLQQYKPLAYPFQSLLYLLLALSTVSAFDRIDFAKTSVAIRNFLA
LEPTALASFLYFTALTLSLSQQMTSDRIYLYEPSVNGSLWPAEVEEPVLMPWVIVNLVVALLVG
LAWLFLSYRPGMDLSEELMFFSDVDEYPERGVKASP

hide sequence

RefSeq Acc Id:	XP_006245037 ⟸ XM_006244975
- Peptide Label:	isoform X1
- UniProtKB:	D3ZAP8 (UniProtKB/TrEMBL), A0A8I6G323 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRETVGEPPPLLGTSTYAERPPRALPPVPSAIQDEIPLSHPKKKKSRTKSTPAPASSEGLAE PVVNRRAEGSEPPAAELKEYPEAPVQRKQKKIRPPPELETSFTEKPSSPSLLRNENGMDVEPRE EVVIPKPRRKAKKMQPAEPQYASELGVEDEDVITDEQSTLEHHSRFTAPTGVSQPVGKIFVEKS RRFQAADRSELIKTTENVDVSMDMKPSWTTRDVALSVHRAFRMIGLFSHGFLAGCAVWNIVVIC VLAGDQFSNVSNLLQQYKPLAYPFQSLLYLLLALSTVSAFDRIDFAKTSVAIRNFLALEPTALA SFLYFTALTLSLSQQMTSDRIYLYEPSVNGSLWPAEVEEPVLMPWVIVNLVVALLVGLAWLFLS YRPGMDLSEELMFFSDVDEYPERGVKASP hide sequence

RefSeq Acc Id:	XP_006245039 ⟸ XM_006244977
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K7G5 (UniProtKB/TrEMBL), A0A8I6G323 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKQVVSEPQRPPRALPPVPSAIQDEIPLSHPKKKKSRTKSTPAPASSEGLAEPVVNRRAEGS EPPAAELKEYPEAPVQRKQKKIRPPPELETSFTEKPSSPSLLRNENGMDVEPREEVVIPKPRRK AKKMQPAEPQYASELGVEDEDVITDEQSTLEHHSRFTAPTGVSQPVGKIFVEKSRRFQAADRSE LIKTTENVDVSMDMKPSWTTRDVALSVHRAFRMIGLFSHGFLAGCAVWNIVVICVLAGDQFSNV SNLLQQYKPLAYPFQSLLYLLLALSTVSAFDRIDFAKTSVAIRNFLALEPTALASFLYFTALTL SLSQQMTSDRIYLYEPSVNGSLWPAEVEEPVLMPWVIVNLVVALLVGLAWLFLSYRPGMDLSEE LMFFSDVDEYPERGVKASP hide sequence

RefSeq Acc Id:

ENSRNOP00000036108 ⟸ ENSRNOT00000031866

RefSeq Acc Id:

ENSRNOP00000074197 ⟸ ENSRNOT00000077483

RefSeq Acc Id:	XP_038939542 ⟸ XM_039083614
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6G323 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939544 ⟸ XM_039083616
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038939545 ⟸ XM_039083617
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038939543 ⟸ XM_039083615
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSRNOP00000078512 ⟸ ENSRNOT00000119394

RefSeq Acc Id:	XP_063123249 ⟸ XM_063267179
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063123250 ⟸ XM_063267180
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K7G5-F1-model_v2	AlphaFold	A0A0G2K7G5	1-403	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696698

Promoter ID:

EPDNEW_R7223

Type:

multiple initiation site

Name:

Tmem237_1

Description:

transmembrane protein 237

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7224

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	65,916,797 - 65,916,857	EPDNEW

RGD ID:

13696699

Promoter ID:

EPDNEW_R7224

Type:

single initiation site

Name:

Tmem237_2

Description:

transmembrane protein 237

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7223

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	65,917,115 - 65,917,175	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306705	AgrOrtholog
BioCyc Gene	G2FUF-27419	BioCyc
Ensembl Genes	ENSRNOG00000024085	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031866.5	UniProtKB/TrEMBL
	ENSRNOT00000077483.2	UniProtKB/TrEMBL
	ENSRNOT00000119394.1	UniProtKB/TrEMBL
InterPro	TMEM237	UniProtKB/TrEMBL
KEGG Report	rno:316412	UniProtKB/TrEMBL
NCBI Gene	316412	ENTREZGENE
PANTHER	PTHR28388	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 237	UniProtKB/TrEMBL
Pfam	TMEM237	UniProtKB/TrEMBL
PhenoGen	Tmem237	PhenoGen
RatGTEx	ENSRNOG00000024085	RatGTEx
UniProt	A0A0G2K7G5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G323	ENTREZGENE, UniProtKB/TrEMBL
	A6IP94	ENTREZGENE, UniProtKB/TrEMBL
	D3ZAP8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Tmem237	transmembrane protein 237	Als2cr4	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Als2cr4	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	Als2cr4_predicted	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Als2cr4_predicted	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM