Cep15 (centrosomal protein 15) - Rat Genome Database

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Gene: Cep15 (centrosomal protein 15) Rattus norvegicus
Analyze
Symbol: Cep15 (Ensembl: RGD1306063)
Name: centrosomal protein 15 (Ensembl:similar to HT021)
RGD ID: 1306063
Description: Orthologous to human CEP15 (centrosomal protein 15); INTERACTS WITH (+)-schisandrin B; 3,3',5-triiodo-L-thyronine; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC289928; LOC289928; RGD1306063; similar to HT021; uncharacterized protein C3orf14 homolog; uncharacterized protein LOC289928
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81515,247,627 - 15,265,560 (-)NCBIGRCr8
mRatBN7.21512,815,159 - 12,835,115 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1512,818,385 - 12,833,838 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1514,947,101 - 14,963,772 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01515,905,554 - 15,922,225 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01514,160,353 - 14,177,024 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01512,869,217 - 12,889,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1512,872,408 - 12,889,108 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01516,899,627 - 16,916,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41514,395,450 - 14,412,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11514,395,422 - 14,412,124 (-)NCBI
Celera1512,815,624 - 12,832,290 (-)NCBICelera
Cytogenetic Map15p15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Cep15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81515,247,627 - 15,265,560 (-)NCBIGRCr8
mRatBN7.21512,815,159 - 12,835,115 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1512,818,385 - 12,833,838 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1514,947,101 - 14,963,772 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01515,905,554 - 15,922,225 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01514,160,353 - 14,177,024 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01512,869,217 - 12,889,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1512,872,408 - 12,889,108 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01516,899,627 - 16,916,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41514,395,450 - 14,412,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11514,395,422 - 14,412,124 (-)NCBI
Celera1512,815,624 - 12,832,290 (-)NCBICelera
Cytogenetic Map15p15NCBI
CEP15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38362,319,022 - 62,336,213 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl362,319,015 - 62,336,213 (+)EnsemblGRCh38hg38GRCh38
GRCh37362,304,697 - 62,321,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36362,280,436 - 62,294,361 (+)NCBINCBI36Build 36hg18NCBI36
Build 34362,280,435 - 62,294,361NCBI
Celera362,322,488 - 62,336,413 (+)NCBICelera
Cytogenetic Map3p14.2NCBI
HuRef362,403,438 - 62,417,387 (+)NCBIHuRef
CHM1_1362,256,503 - 62,270,432 (+)NCBICHM1_1
T2T-CHM13v2.0362,362,532 - 62,379,727 (+)NCBIT2T-CHM13v2.0
Cep15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391410,147,278 - 10,185,610 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1410,166,532 - 10,185,590 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1410,145,309 - 10,185,787 (-)EnsemblGRCm39 Ensembl
GRCm381412,284,153 - 12,324,492 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1412,284,173 - 12,303,231 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1412,283,976 - 12,324,454 (+)EnsemblGRCm38mm10GRCm38
MGSCv371413,116,723 - 13,135,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361411,077,500 - 11,096,498 (+)NCBIMGSCv36mm8
Celera147,913,753 - 7,932,612 (+)NCBICelera
Cytogenetic Map14A1NCBI
cM Map146.34NCBI
Cep15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555173,475,540 - 3,490,163 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555173,475,345 - 3,489,911 (-)NCBIChiLan1.0ChiLan1.0
CEP15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2262,262,790 - 62,277,506 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1362,267,577 - 62,282,293 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0362,242,198 - 62,256,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1363,629,641 - 63,646,877 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl363,629,711 - 63,646,877 (+)Ensemblpanpan1.1panPan2
CEP15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12028,744,910 - 28,759,706 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2028,745,182 - 28,759,397 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2028,673,315 - 28,687,937 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02028,979,947 - 28,994,577 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12028,465,625 - 28,480,242 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02028,823,579 - 28,838,199 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02028,923,635 - 28,938,262 (-)NCBIUU_Cfam_GSD_1.0
Cep15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118165,678,353 - 165,711,207 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366374,085,967 - 4,100,745 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366374,086,706 - 4,100,751 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1343,898,265 - 43,915,145 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11343,897,392 - 43,914,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21347,901,215 - 47,918,049 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12223,392,380 - 23,407,052 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2223,392,390 - 23,408,712 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041143,457,638 - 143,472,902 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248883,501,027 - 3,515,041 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cep15
84 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:27
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000061214
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat

Markers in Region
RH131113  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,833,020 - 12,833,204 (+)MAPPERmRatBN7.2
Rnor_6.01512,887,075 - 12,887,258NCBIRnor6.0
Rnor_5.01516,914,294 - 16,914,477UniSTSRnor5.0
RGSC_v3.41514,410,089 - 14,410,272UniSTSRGSC3.4
Celera1512,830,263 - 12,830,446UniSTS
RH 3.4 Map15110.42UniSTS
Cytogenetic Map15p16UniSTS
RH143598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,830,608 - 12,830,711 (+)MAPPERmRatBN7.2
Rnor_6.01512,884,663 - 12,884,765NCBIRnor6.0
Rnor_5.01516,911,882 - 16,911,984UniSTSRnor5.0
RGSC_v3.41514,407,677 - 14,407,779UniSTSRGSC3.4
Celera1512,827,851 - 12,827,953UniSTS
RH 3.4 Map15108.6UniSTS
Cytogenetic Map15p16UniSTS
BE108434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,824,773 - 12,824,960 (+)MAPPERmRatBN7.2
Rnor_6.01512,878,828 - 12,879,014NCBIRnor6.0
Rnor_5.01516,906,047 - 16,906,233UniSTSRnor5.0
RGSC_v3.41514,401,842 - 14,402,028UniSTSRGSC3.4
Celera1512,822,016 - 12,822,202UniSTS
RH 3.4 Map15108.9UniSTS
Cytogenetic Map15p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000061214   ⟹   ENSRNOP00000057927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1512,872,439 - 12,889,102 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084687   ⟹   ENSRNOP00000069161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,818,385 - 12,833,838 (-)Ensembl
Rnor_6.0 Ensembl1512,872,408 - 12,889,108 (-)Ensembl
RefSeq Acc Id: NM_001106026   ⟹   NP_001099496
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,248,809 - 15,265,475 (-)NCBI
mRatBN7.21512,818,382 - 12,835,048 (-)NCBI
Rnor_6.01512,872,436 - 12,889,102 (-)NCBI
Rnor_5.01516,899,627 - 16,916,353 (-)NCBI
RGSC_v3.41514,395,450 - 14,412,116 (-)RGD
Celera1512,815,624 - 12,832,290 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251730   ⟹   XP_006251792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,516 (-)NCBI
mRatBN7.21512,815,159 - 12,835,115 (-)NCBI
Rnor_6.01512,869,217 - 12,889,144 (-)NCBI
Rnor_5.01516,899,627 - 16,916,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251731   ⟹   XP_006251793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,517 (-)NCBI
mRatBN7.21512,815,159 - 12,835,090 (-)NCBI
Rnor_6.01512,869,217 - 12,889,144 (-)NCBI
Rnor_5.01516,899,627 - 16,916,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251732   ⟹   XP_006251794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,461 (-)NCBI
mRatBN7.21512,815,159 - 12,835,013 (-)NCBI
Rnor_6.01512,869,217 - 12,889,075 (-)NCBI
Rnor_5.01516,899,627 - 16,916,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251733   ⟹   XP_006251795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,483 (-)NCBI
mRatBN7.21512,815,159 - 12,835,060 (-)NCBI
Rnor_6.01512,869,217 - 12,889,062 (-)NCBI
Rnor_5.01516,899,627 - 16,916,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251736   ⟹   XP_006251798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,536 (-)NCBI
mRatBN7.21512,815,159 - 12,835,114 (-)NCBI
Rnor_6.01512,869,217 - 12,889,144 (-)NCBI
Rnor_5.01516,899,627 - 16,916,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599609   ⟹   XP_017455098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,264,937 (-)NCBI
mRatBN7.21512,815,159 - 12,834,910 (-)NCBI
Rnor_6.01512,869,217 - 12,888,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093086   ⟹   XP_038949014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,529 (-)NCBI
mRatBN7.21512,818,382 - 12,835,090 (-)NCBI
RefSeq Acc Id: XM_039093088   ⟹   XP_038949016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,560 (-)NCBI
mRatBN7.21512,815,159 - 12,835,090 (-)NCBI
RefSeq Acc Id: XM_063274071   ⟹   XP_063130141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,264,937 (-)NCBI
RefSeq Acc Id: XM_063274073   ⟹   XP_063130143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,494 (-)NCBI
RefSeq Acc Id: XM_063274074   ⟹   XP_063130144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,264,937 (-)NCBI
RefSeq Acc Id: XM_063274075   ⟹   XP_063130145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,478 (-)NCBI
RefSeq Acc Id: XM_063274076   ⟹   XP_063130146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,265,461 (-)NCBI
RefSeq Acc Id: XM_063274077   ⟹   XP_063130147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,264,937 (-)NCBI
RefSeq Acc Id: XM_063274078   ⟹   XP_063130148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,247,627 - 15,264,937 (-)NCBI
RefSeq Acc Id: XM_063274079   ⟹   XP_063130149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,256,755 - 15,265,516 (-)NCBI
RefSeq Acc Id: XM_063274080   ⟹   XP_063130150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,253,191 - 15,265,516 (-)NCBI
RefSeq Acc Id: XM_063274081   ⟹   XP_063130151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,256,951 - 15,265,516 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099496 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251792 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251793 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251794 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251795 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251798 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455098 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949014 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949016 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130141 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130143 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130144 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130145 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130146 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130147 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130148 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130149 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130150 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130151 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68755 (Get FASTA)   NCBI Sequence Viewer  
  EDL94137 (Get FASTA)   NCBI Sequence Viewer  
  EDL94138 (Get FASTA)   NCBI Sequence Viewer  
  EDL94139 (Get FASTA)   NCBI Sequence Viewer  
  EDL94140 (Get FASTA)   NCBI Sequence Viewer  
  EDL94141 (Get FASTA)   NCBI Sequence Viewer  
  EDL94142 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069161
  ENSRNOP00000069161.1
RefSeq Acc Id: NP_001099496   ⟸   NM_001106026
- UniProtKB: B5DEQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251793   ⟸   XM_006251731
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006251798   ⟸   XM_006251736
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JUN2 (UniProtKB/TrEMBL),   A6K091 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251792   ⟸   XM_006251730
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006251795   ⟸   XM_006251733
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006251794   ⟸   XM_006251732
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455098   ⟸   XM_017599609
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000069161   ⟸   ENSRNOT00000084687
RefSeq Acc Id: ENSRNOP00000057927   ⟸   ENSRNOT00000061214
RefSeq Acc Id: XP_038949016   ⟸   XM_039093088
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JUN2 (UniProtKB/TrEMBL),   A6K091 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949014   ⟸   XM_039093086
- Peptide Label: isoform X2
- UniProtKB: B5DEQ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130143   ⟸   XM_063274073
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063130145   ⟸   XM_063274075
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130146   ⟸   XM_063274076
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130148   ⟸   XM_063274078
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130141   ⟸   XM_063274071
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130144   ⟸   XM_063274074
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063130147   ⟸   XM_063274077
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130150   ⟸   XM_063274080
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063130149   ⟸   XM_063274079
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063130151   ⟸   XM_063274081
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEQ1-F1-model_v2 AlphaFold B5DEQ1 1-126 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699585
Promoter ID:EPDNEW_R10108
Type:multiple initiation site
Name:RGD1306063_1
Description:similar to HT021
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01512,889,123 - 12,889,183EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306063 AgrOrtholog
BioCyc Gene G2FUF-14351 BioCyc
Ensembl Genes ENSRNOG00000039871 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084687.2 UniProtKB/TrEMBL
InterPro DUF4570 UniProtKB/TrEMBL
KEGG Report rno:289928 UniProtKB/TrEMBL
NCBI Gene 289928 ENTREZGENE
PANTHER PTHR14286 UniProtKB/TrEMBL
  RGD1306063 PROTEIN UniProtKB/TrEMBL
Pfam DUF4570 UniProtKB/TrEMBL
PhenoGen Cep15 PhenoGen
RatGTEx ENSRNOG00000039871 RatGTEx
UniProt A0A0G2JUN2 ENTREZGENE, UniProtKB/TrEMBL
  A6K091 ENTREZGENE, UniProtKB/TrEMBL
  B5DEQ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-18 Cep15  centrosomal protein 15  RGD1306063  similar to HT021  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306063  similar to HT021   RGD1306063_predicted  similar to HT021 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306063_predicted  similar to HT021 (predicted)  LOC289928_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289928_predicted  similar to HT021 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL