Klf7 (KLF transcription factor 7) - Rat Genome Database

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Gene: Klf7 (KLF transcription factor 7) Rattus norvegicus
Analyze
Symbol: Klf7
Name: KLF transcription factor 7
RGD ID: 1306029
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including negative regulation of adipose tissue development; negative regulation of insulin secretion involved in cellular response to glucose stimulus; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within axon guidance; dendrite morphogenesis; and positive regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleoplasm. Orthologous to human KLF7 (KLF transcription factor 7); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Krueppel-like factor 7; Kruppel like factor 7; Kruppel-like factor 7 (ubiquitous); LOC363243
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,927,485 - 73,020,167 (-)NCBIGRCr8
mRatBN7.2965,433,683 - 65,526,372 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl965,437,167 - 65,526,261 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx973,952,187 - 74,039,273 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0979,089,971 - 79,177,093 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0977,480,973 - 77,568,080 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0970,740,480 - 70,787,913 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl970,740,480 - 70,787,913 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0971,787,156 - 71,834,589 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4962,690,536 - 62,738,089 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1962,837,684 - 62,931,073 (-)NCBI
Celera962,847,936 - 62,895,117 (-)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
divanadium pentaoxide  (ISO)
fenthion  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
furan  (EXP)
geraniol  (ISO)
hydroquinone  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
morphine  (ISO)
naloxone  (ISO)
ozone  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
Soman  (EXP)
sotorasib  (ISO)
styrene  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trametinib  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9774444   PMID:15964824   PMID:16339272   PMID:20580711   PMID:27714571   PMID:28916725   PMID:33969678   PMID:35321971   PMID:36566916  


Genomics

Comparative Map Data
Klf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,927,485 - 73,020,167 (-)NCBIGRCr8
mRatBN7.2965,433,683 - 65,526,372 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl965,437,167 - 65,526,261 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx973,952,187 - 74,039,273 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0979,089,971 - 79,177,093 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0977,480,973 - 77,568,080 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0970,740,480 - 70,787,913 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl970,740,480 - 70,787,913 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0971,787,156 - 71,834,589 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4962,690,536 - 62,738,089 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1962,837,684 - 62,931,073 (-)NCBI
Celera962,847,936 - 62,895,117 (-)NCBICelera
Cytogenetic Map9q32NCBI
KLF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382207,074,137 - 207,173,851 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2207,074,137 - 207,173,856 (-)EnsemblGRCh38hg38GRCh38
GRCh372207,938,861 - 208,031,970 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362207,653,774 - 207,738,859 (-)NCBINCBI36Build 36hg18NCBI36
Build 342207,771,034 - 207,856,120NCBI
Celera2201,706,987 - 201,792,085 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2199,788,743 - 199,882,048 (-)NCBIHuRef
CHM1_12207,944,767 - 208,037,841 (-)NCBICHM1_1
T2T-CHM13v2.02207,556,313 - 207,657,581 (-)NCBIT2T-CHM13v2.0
Klf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,068,607 - 64,161,504 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,068,606 - 64,161,441 (-)EnsemblGRCm39 Ensembl
GRCm38164,029,448 - 64,122,345 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,029,447 - 64,122,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv37164,082,237 - 64,167,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,969,939 - 64,055,665 (-)NCBIMGSCv36mm8
Celera164,551,954 - 64,637,590 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.31NCBI

Variants

.
Variants in Klf7
356 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:81
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000017901, ENSRNOT00000072007
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96138143465691299Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat

Markers in Region
AI229204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2965,439,254 - 65,439,453 (+)MAPPERmRatBN7.2
Rnor_6.0970,742,200 - 70,742,398NCBIRnor6.0
Rnor_5.0971,832,671 - 71,832,869UniSTSRnor5.0
RGSC_v3.4962,692,256 - 62,692,454UniSTSRGSC3.4
Celera962,849,656 - 62,849,854UniSTS
RH 3.4 Map9536.8UniSTS
Cytogenetic Map9q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 66 6 11
Low 3 43 52 37 18 37 8 11 8 35 33 8
Below cutoff 4 4 4 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000072007   ⟹   ENSRNOP00000067389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl965,437,167 - 65,526,261 (-)Ensembl
Rnor_6.0 Ensembl970,740,480 - 70,787,913 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099684   ⟹   ENSRNOP00000084533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl965,437,167 - 65,485,330 (-)Ensembl
RefSeq Acc Id: NM_001399681   ⟹   NP_001386610
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8972,933,136 - 73,020,056 (-)NCBI
mRatBN7.2965,439,337 - 65,526,261 (-)NCBI
RefSeq Acc Id: XM_039084860   ⟹   XP_038940788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8972,927,485 - 73,020,167 (-)NCBI
mRatBN7.2965,433,683 - 65,526,372 (-)NCBI
RefSeq Acc Id: XM_063267384   ⟹   XP_063123454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8972,927,485 - 73,020,165 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001386610 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940788 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123454 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98884 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067389
  ENSRNOP00000067389.2
  ENSRNOP00000084533
  ENSRNOP00000084533.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000067389   ⟸   ENSRNOT00000072007
RefSeq Acc Id: ENSRNOP00000084533   ⟸   ENSRNOT00000099684
RefSeq Acc Id: XP_038940788   ⟸   XM_039084860
- Peptide Label: isoform X1
- UniProtKB: M0RCR2 (UniProtKB/TrEMBL),   A0A8I5ZZK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386610   ⟸   NM_001399681
RefSeq Acc Id: XP_063123454   ⟸   XM_063267384
- Peptide Label: isoform X2
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RCR2-F1-model_v2 AlphaFold M0RCR2 1-94 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306029 AgrOrtholog
BioCyc Gene G2FUF-27332 BioCyc
Ensembl Genes ENSRNOG00000046242 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072007.3 UniProtKB/TrEMBL
  ENSRNOT00000099684 ENTREZGENE
  ENSRNOT00000099684.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene 363243 ENTREZGENE
PANTHER KRUEPPEL-LIKE FACTOR 7 UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Klf7 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046242 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZZK8 ENTREZGENE, UniProtKB/TrEMBL
  M0RCR2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-03 Klf7  KLF transcription factor 7  Klf7  Kruppel like factor 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-06-08 Klf7  Kruppel like factor 7  Klf7  Kruppel-like factor 7 (ubiquitous)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Klf7  Kruppel-like factor 7 (ubiquitous)   Klf7_predicted  Kruppel-like factor 7 (ubiquitous) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Klf7_predicted  Kruppel-like factor 7 (ubiquitous) (predicted)      Symbol and Name status set to approved 70820 APPROVED