Zgrf1 (zinc finger, GRF-type containing 1) - Rat Genome Database

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Gene: Zgrf1 (zinc finger, GRF-type containing 1) Rattus norvegicus
Analyze
Symbol: Zgrf1
Name: zinc finger, GRF-type containing 1
RGD ID: 1305834
Description: Predicted to enable 5'-3' DNA helicase activity. Predicted to be involved in double-strand break repair and recombinational repair. Predicted to be active in nucleus and site of double-strand break. Orthologous to human ZGRF1 (zinc finger GRF-type containing 1); INTERACTS WITH acrylamide; aflatoxin B1; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5'-3' DNA helicase ZGRF1; LOC310880; RGD1305834; similar to hypothetical protein FLJ11331
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82218,687,413 - 218,750,104 (+)NCBIGRCr8
mRatBN7.22216,012,911 - 216,075,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2216,013,005 - 216,074,750 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02231,881,893 - 231,944,760 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2231,884,337 - 231,940,877 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02251,227,261 - 251,289,555 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42224,818,192 - 224,877,373 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12224,802,668 - 224,864,053 (+)NCBI
Celera2208,329,610 - 208,390,952 (+)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zgrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82218,687,413 - 218,750,104 (+)NCBIGRCr8
mRatBN7.22216,012,911 - 216,075,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2216,013,005 - 216,074,750 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02231,881,893 - 231,944,760 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2231,884,337 - 231,940,877 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02251,227,261 - 251,289,555 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42224,818,192 - 224,877,373 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12224,802,668 - 224,864,053 (+)NCBI
Celera2208,329,610 - 208,390,952 (+)NCBICelera
Cytogenetic Map2q42NCBI
ZGRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384112,539,339 - 112,636,909 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4112,539,333 - 112,636,995 (-)EnsemblGRCh38hg38GRCh38
GRCh374113,460,495 - 113,558,065 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364113,730,235 - 113,777,505 (-)NCBINCBI36Build 36hg18NCBI36
Celera4110,754,552 - 110,852,228 (-)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4109,192,191 - 109,286,555 (-)NCBIHuRef
CHM1_14113,437,328 - 113,534,631 (-)NCBICHM1_1
T2T-CHM13v2.04115,847,675 - 115,945,477 (-)NCBIT2T-CHM13v2.0
Zgrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393127,347,080 - 127,411,672 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3127,347,138 - 127,411,672 (+)EnsemblGRCm39 Ensembl
GRCm383127,553,396 - 127,618,023 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3127,553,489 - 127,618,023 (+)EnsemblGRCm38mm10GRCm38
MGSCv373127,256,407 - 127,320,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363127,545,511 - 127,610,045 (+)NCBIMGSCv36mm8
Celera3134,045,836 - 134,107,956 (+)NCBICelera
Cytogenetic Map3G2NCBI
cM Map356.54NCBI
Zgrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545714,200,280 - 14,258,010 (+)NCBIChiLan1.0ChiLan1.0
ZGRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23110,614,394 - 110,714,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14110,902,828 - 111,008,255 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04105,026,069 - 105,128,226 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14115,590,103 - 115,690,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4115,590,311 - 115,686,089 (-)Ensemblpanpan1.1panPan2
ZGRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13232,344,348 - 32,421,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3232,344,791 - 32,418,441 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,610,178 - 9,686,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03232,570,557 - 32,647,405 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3232,570,769 - 32,644,404 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13232,553,455 - 32,630,150 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03232,315,249 - 32,392,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,468,583 - 7,544,830 (+)NCBIUU_Cfam_GSD_1.0
Zgrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053018,454,336 - 8,536,776 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365633,372,603 - 3,455,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZGRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8110,090,001 - 110,168,081 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18110,089,920 - 110,168,086 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28115,057,978 - 115,077,571 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZGRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1760,322,709 - 60,407,026 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl760,322,750 - 60,403,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603739,081,955 - 39,165,872 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Zgrf1
337 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:39
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000014695
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2185876309219753474Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat

Markers in Region
BE108947  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22216,071,611 - 216,071,761 (+)MAPPERmRatBN7.2
Rnor_6.02231,940,767 - 231,940,916NCBIRnor6.0
Rnor_5.02251,286,291 - 251,286,440UniSTSRnor5.0
RGSC_v3.42224,874,643 - 224,874,792UniSTSRGSC3.4
Celera2208,386,959 - 208,387,108UniSTS
RH 3.4 Map21546.5UniSTS
Cytogenetic Map2q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 11 7
Low 3 40 47 37 8 37 8 8 74 33 34 11 8
Below cutoff 3 4 4 4 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ230908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014695   ⟹   ENSRNOP00000014695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2216,013,005 - 216,074,750 (+)Ensembl
Rnor_6.0 Ensembl2231,884,337 - 231,940,877 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102679   ⟹   ENSRNOP00000078185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2216,013,005 - 216,074,750 (+)Ensembl
RefSeq Acc Id: NM_001427701   ⟹   NP_001414630
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,505 - 218,750,104 (+)NCBI
RefSeq Acc Id: XM_006233297   ⟹   XP_006233359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,694,804 - 218,750,102 (+)NCBI
mRatBN7.22216,012,986 - 216,075,608 (+)NCBI
Rnor_6.02231,889,553 - 231,944,760 (+)NCBI
Rnor_5.02251,227,261 - 251,289,555 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761480   ⟹   XP_008759702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,750,102 (+)NCBI
mRatBN7.22216,012,986 - 216,075,608 (+)NCBI
Rnor_6.02231,881,893 - 231,944,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591336   ⟹   XP_017446825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,419 - 218,750,102 (+)NCBI
mRatBN7.22216,012,924 - 216,075,608 (+)NCBI
Rnor_6.02231,881,893 - 231,944,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591337   ⟹   XP_017446826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,750,102 (+)NCBI
mRatBN7.22216,012,986 - 216,075,608 (+)NCBI
Rnor_6.02231,881,893 - 231,944,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591338   ⟹   XP_017446827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,296 (+)NCBI
mRatBN7.22216,012,986 - 216,072,807 (+)NCBI
Rnor_6.02231,881,893 - 231,941,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591339   ⟹   XP_017446828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,745,969 (+)NCBI
mRatBN7.22216,012,986 - 216,071,472 (+)NCBI
Rnor_6.02231,881,893 - 231,941,506 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104048   ⟹   XP_038959976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,413 - 218,750,102 (+)NCBI
mRatBN7.22216,012,914 - 216,075,608 (+)NCBI
RefSeq Acc Id: XM_039104050   ⟹   XP_038959978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,413 - 218,750,102 (+)NCBI
mRatBN7.22216,012,914 - 216,075,608 (+)NCBI
RefSeq Acc Id: XM_039104052   ⟹   XP_038959980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,750,102 (+)NCBI
mRatBN7.22216,012,986 - 216,075,608 (+)NCBI
RefSeq Acc Id: XM_039104054   ⟹   XP_038959982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,296 (+)NCBI
mRatBN7.22216,012,986 - 216,072,807 (+)NCBI
RefSeq Acc Id: XM_039104056   ⟹   XP_038959984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,731,216 (+)NCBI
mRatBN7.22216,012,986 - 216,056,717 (+)NCBI
RefSeq Acc Id: XM_039104060   ⟹   XP_038959988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,696,077 - 218,750,102 (+)NCBI
mRatBN7.22216,021,578 - 216,075,608 (+)NCBI
RefSeq Acc Id: XM_063281967   ⟹   XP_063138037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,419 - 218,750,102 (+)NCBI
RefSeq Acc Id: XM_063281968   ⟹   XP_063138038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,270 (+)NCBI
RefSeq Acc Id: XM_063281970   ⟹   XP_063138040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,953 - 218,750,102 (+)NCBI
RefSeq Acc Id: XM_063281971   ⟹   XP_063138041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,697,488 - 218,750,102 (+)NCBI
RefSeq Acc Id: XM_063281972   ⟹   XP_063138042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,697,488 - 218,750,102 (+)NCBI
RefSeq Acc Id: XM_063281973   ⟹   XP_063138043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,697,488 - 218,750,102 (+)NCBI
RefSeq Acc Id: XR_001836899
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,745,968 (+)NCBI
mRatBN7.22216,012,986 - 216,071,471 (+)NCBI
Rnor_6.02231,881,893 - 231,940,590 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005501498
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,745,968 (+)NCBI
mRatBN7.22216,012,986 - 216,071,471 (+)NCBI
RefSeq Acc Id: XR_005501499
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,260 (+)NCBI
mRatBN7.22216,012,986 - 216,072,763 (+)NCBI
RefSeq Acc Id: XR_005501500
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,582 (+)NCBI
mRatBN7.22216,012,986 - 216,073,085 (+)NCBI
RefSeq Acc Id: XR_005501501
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,260 (+)NCBI
mRatBN7.22216,012,986 - 216,072,763 (+)NCBI
RefSeq Acc Id: XR_005501502
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,743,966 (+)NCBI
mRatBN7.22216,012,986 - 216,069,469 (+)NCBI
RefSeq Acc Id: XR_005501503
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,272 (+)NCBI
mRatBN7.22216,012,986 - 216,072,770 (+)NCBI
RefSeq Acc Id: XR_005501504
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,687,954 - 218,747,273 (+)NCBI
mRatBN7.22216,012,986 - 216,072,773 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006233359   ⟸   XM_006233297
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008759702   ⟸   XM_008761480
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017446826   ⟸   XM_017591337
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017446825   ⟸   XM_017591336
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y8G8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446827   ⟸   XM_017591338
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017446828   ⟸   XM_017591339
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000014695   ⟸   ENSRNOT00000014695
RefSeq Acc Id: XP_038959978   ⟸   XM_039104050
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y8G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959976   ⟸   XM_039104048
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y8G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959980   ⟸   XM_039104052
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959982   ⟸   XM_039104054
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038959984   ⟸   XM_039104056
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038959988   ⟸   XM_039104060
- Peptide Label: isoform X16
RefSeq Acc Id: ENSRNOP00000078185   ⟸   ENSRNOT00000102679
RefSeq Acc Id: XP_063138037   ⟸   XM_063281967
- Peptide Label: isoform X2
- UniProtKB: F1M404 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414630   ⟸   NM_001427701
RefSeq Acc Id: XP_063138040   ⟸   XM_063281970
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063138038   ⟸   XM_063281968
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063138041   ⟸   XM_063281971
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063138042   ⟸   XM_063281972
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063138043   ⟸   XM_063281973
- Peptide Label: isoform X15
Protein Domains
GRF-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M404-F1-model_v2 AlphaFold F1M404 1-1565 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305834 AgrOrtholog
BioCyc Gene G2FUF-51271 BioCyc
Ensembl Genes ENSRNOG00000036980 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014695.8 UniProtKB/TrEMBL
  ENSRNOT00000102679.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DNA2/NAM7-like_C UniProtKB/TrEMBL
  DNA2/NAM7_AAA_11 UniProtKB/TrEMBL
  DUF2439 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SF1_C_Upf1 UniProtKB/TrEMBL
  Znf_GRF UniProtKB/TrEMBL
KEGG Report rno:310880 UniProtKB/TrEMBL
NCBI Gene 310880 ENTREZGENE
PANTHER PROTEIN ZGRF1 UniProtKB/TrEMBL
  ZINC FINGER GRF-TYPE CONTAINING 1 UniProtKB/TrEMBL
Pfam AAA_11 UniProtKB/TrEMBL
  AAA_12 UniProtKB/TrEMBL
  DUF2439 UniProtKB/TrEMBL
  zf-GRF UniProtKB/TrEMBL
PhenoGen Zgrf1 PhenoGen
PROSITE ZF_GRF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036980 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5Y8G8 ENTREZGENE, UniProtKB/TrEMBL
  F1M404 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-13 Zgrf1  zinc finger, GRF-type containing 1  RGD1305834  similar to hypothetical protein FLJ11331  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 RGD1305834  similar to hypothetical protein FLJ11331  LOC100363957  hypothetical protein LOC100363957  Data merged from RGD:2322000 1643240 APPROVED
2010-05-06 LOC100363957  hypothetical protein LOC100363957      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1305834  similar to hypothetical protein FLJ11331   RGD1305834_predicted  similar to hypothetical protein FLJ11331 (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 RGD1305834_predicted  similar to hypothetical protein FLJ11331 (predicted)  LOC686897  similar to prematurely terminated mRNA decay factor-like  Data merged from RGD:1592462 1643240 APPROVED
2006-11-20 LOC686897  similar to prematurely terminated mRNA decay factor-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1305834_predicted  similar to hypothetical protein FLJ11331 (predicted)  LOC310880_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310880_predicted  similar to hypothetical protein FLJ11331 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL