Foxn3 (forkhead box N3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Foxn3 (forkhead box N3) Rattus norvegicus
Analyze
Symbol: Foxn3
Name: forkhead box N3
RGD ID: 1305711
Description: Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in mitotic G2 DNA damage checkpoint signaling and negative regulation of DNA-templated transcription. Predicted to act upstream of or within craniofacial suture morphogenesis. Predicted to be active in nucleus. Orthologous to human FOXN3 (forkhead box N3); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: checkpoint suppressor 1; Ches1; forkhead box protein N3; LOC314374
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86124,191,695 - 124,572,070 (-)NCBIGRCr8
mRatBN7.26118,462,018 - 118,842,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6118,466,025 - 118,842,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6118,617,429 - 118,993,109 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06118,914,255 - 119,289,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06118,249,108 - 118,624,784 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06123,183,720 - 123,577,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6123,187,726 - 123,577,695 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06132,412,688 - 132,806,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46123,385,156 - 123,762,322 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16123,387,656 - 123,597,077 (-)NCBI
Celera6116,022,168 - 116,383,731 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-methylcholanthrene  (EXP)
4-vinylcyclohexene dioxide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-naphthoflavone  (EXP)
amitrole  (EXP)
amosite asbestos  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (EXP)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
ethanol  (ISO)
flutamide  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (ISO)
mifepristone  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitrofen  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
permethrin  (EXP)
phenobarbital  (ISO)
potassium dichromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (EXP)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9154802   PMID:12477932   PMID:16102918   PMID:16951149   PMID:20691664   PMID:27292639  


Genomics

Comparative Map Data
Foxn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86124,191,695 - 124,572,070 (-)NCBIGRCr8
mRatBN7.26118,462,018 - 118,842,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6118,466,025 - 118,842,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6118,617,429 - 118,993,109 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06118,914,255 - 119,289,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06118,249,108 - 118,624,784 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06123,183,720 - 123,577,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6123,187,726 - 123,577,695 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06132,412,688 - 132,806,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46123,385,156 - 123,762,322 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16123,387,656 - 123,597,077 (-)NCBI
Celera6116,022,168 - 116,383,731 (-)NCBICelera
Cytogenetic Map6q32NCBI
FOXN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381489,156,177 - 89,619,165 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1489,124,871 - 89,619,149 (-)EnsemblGRCh38hg38GRCh38
GRCh371489,622,521 - 90,085,509 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361488,692,269 - 89,155,247 (-)NCBINCBI36Build 36hg18NCBI36
Build 341488,692,277 - 88,953,127NCBI
Celera1469,670,626 - 70,132,768 (-)NCBICelera
Cytogenetic Map14q31.3-q32.11NCBI
HuRef1469,797,362 - 70,258,776 (-)NCBIHuRef
CHM1_11489,560,279 - 90,023,548 (-)NCBICHM1_1
T2T-CHM13v2.01483,379,834 - 83,842,985 (-)NCBIT2T-CHM13v2.0
Foxn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391299,156,340 - 99,529,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1299,156,337 - 99,529,841 (-)EnsemblGRCm39 Ensembl
GRCm381299,190,081 - 99,563,667 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1299,190,078 - 99,563,582 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712100,433,304 - 100,688,284 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361299,596,144 - 99,851,124 (-)NCBIMGSCv36mm8
Celera12100,408,887 - 100,667,857 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1249.93NCBI
Foxn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543811,720,570 - 12,126,185 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543811,720,563 - 12,126,185 (-)NCBIChiLan1.0ChiLan1.0
FOXN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21590,304,741 - 90,765,469 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11489,521,246 - 89,981,946 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01469,778,191 - 70,238,813 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11489,134,673 - 89,468,817 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1489,140,892 - 89,387,807 (-)Ensemblpanpan1.1panPan2
FOXN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1860,324,808 - 60,612,959 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3412,398,370 - 12,399,773 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha859,906,266 - 60,299,259 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0860,603,344 - 60,990,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl860,602,081 - 60,988,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1860,279,420 - 60,672,434 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0860,327,990 - 60,721,085 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0860,655,678 - 61,049,079 (-)NCBIUU_Cfam_GSD_1.0
Foxn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864015,233,255 - 15,508,229 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648816,560,732 - 16,828,972 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7111,039,633 - 111,451,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17111,036,492 - 111,454,106 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27117,699,681 - 117,907,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.27117,530,994 - 117,562,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7qNCBI
FOXN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12466,832,760 - 67,103,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605354,173,484 - 54,427,857 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473412,748,001 - 13,154,992 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxn3
2355 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:135
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000006604
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat

Markers in Region
D6Got202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26118,635,166 - 118,635,448 (+)MAPPERmRatBN7.2
Rnor_6.06123,369,129 - 123,369,410NCBIRnor6.0
Rnor_5.06132,597,878 - 132,598,159UniSTSRnor5.0
RGSC_v3.46123,553,823 - 123,554,105RGDRGSC3.4
RGSC_v3.46123,553,824 - 123,554,105UniSTSRGSC3.4
RGSC_v3.16123,557,571 - 123,557,852RGD
Celera6116,189,209 - 116,189,490UniSTS
RH 3.4 Map6866.7UniSTS
RH 3.4 Map6866.7RGD
RH 2.0 Map61023.9RGD
Cytogenetic Map6q32UniSTS
D6Got170  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26118,791,062 - 118,791,192 (+)MAPPERmRatBN7.2
Rnor_6.06123,524,913 - 123,525,042NCBIRnor6.0
Rnor_5.06132,753,580 - 132,753,709UniSTSRnor5.0
RGSC_v3.46123,709,539 - 123,709,669RGDRGSC3.4
RGSC_v3.46123,709,540 - 123,709,669UniSTSRGSC3.4
RGSC_v3.16123,713,287 - 123,713,416RGD
Celera6116,332,467 - 116,332,596UniSTS
RH 3.4 Map6874.8UniSTS
RH 3.4 Map6874.8RGD
RH 2.0 Map61033.0RGD
Cytogenetic Map6q32UniSTS
D6Got169  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26118,638,680 - 118,638,868 (+)MAPPERmRatBN7.2
Rnor_6.06123,372,643 - 123,372,830NCBIRnor6.0
Rnor_5.06132,601,392 - 132,601,579UniSTSRnor5.0
RGSC_v3.46123,557,337 - 123,557,525RGDRGSC3.4
RGSC_v3.46123,557,338 - 123,557,525UniSTSRGSC3.4
RGSC_v3.16123,561,084 - 123,561,272RGD
Celera6116,192,723 - 116,192,900UniSTS
Cytogenetic Map6q32UniSTS
BE105434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26118,636,569 - 118,636,728 (+)MAPPERmRatBN7.2
Rnor_6.06123,370,532 - 123,370,690NCBIRnor6.0
Rnor_5.06132,599,281 - 132,599,439UniSTSRnor5.0
RGSC_v3.46123,555,227 - 123,555,385UniSTSRGSC3.4
Celera6116,190,612 - 116,190,770UniSTS
RH 3.4 Map6866.6UniSTS
Cytogenetic Map6q32UniSTS
BF403590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26118,624,212 - 118,624,460 (+)MAPPERmRatBN7.2
Rnor_6.06123,358,264 - 123,358,511NCBIRnor6.0
Rnor_5.06132,587,083 - 132,587,330UniSTSRnor5.0
RGSC_v3.46123,542,688 - 123,542,935UniSTSRGSC3.4
Celera6116,178,548 - 116,178,795UniSTS
RH 3.4 Map6870.99UniSTS
Cytogenetic Map6q32UniSTS
GDB:1317640  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26118,651,692 - 118,652,609 (+)MAPPERmRatBN7.2
Rnor_6.06123,385,655 - 123,386,571NCBIRnor6.0
Rnor_5.06132,614,404 - 132,615,320UniSTSRnor5.0
RGSC_v3.46123,570,350 - 123,571,266UniSTSRGSC3.4
Celera6116,205,725 - 116,206,641UniSTS
Cytogenetic Map6q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 37 35 25 19 25 8 11 74 24 34 11 8
Low 1 6 22 16 16 11 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006604   ⟹   ENSRNOP00000006604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6118,466,025 - 118,842,401 (-)Ensembl
Rnor_6.0 Ensembl6123,187,726 - 123,577,695 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083665   ⟹   ENSRNOP00000070786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6118,466,025 - 118,842,401 (-)Ensembl
Rnor_6.0 Ensembl6123,189,601 - 123,405,246 (-)Ensembl
RefSeq Acc Id: NM_001108047   ⟹   NP_001101517
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,195,701 - 124,572,040 (-)NCBI
mRatBN7.26118,466,025 - 118,842,401 (-)NCBI
Rnor_6.06123,187,726 - 123,577,695 (-)NCBI
Rnor_5.06132,412,688 - 132,806,377 (-)NCBI
RGSC_v3.46123,385,156 - 123,762,322 (-)RGD
Celera6116,022,168 - 116,383,731 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240429   ⟹   XP_006240491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,414,253 (-)NCBI
mRatBN7.26118,462,018 - 118,675,085 (-)NCBI
Rnor_6.06123,183,720 - 123,408,632 (-)NCBI
Rnor_5.06132,412,688 - 132,806,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240431   ⟹   XP_006240493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,404,080 (-)NCBI
mRatBN7.26118,462,018 - 118,674,417 (-)NCBI
Rnor_6.06123,183,720 - 123,408,466 (-)NCBI
Rnor_5.06132,412,688 - 132,806,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764801   ⟹   XP_008763023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,572,065 (-)NCBI
mRatBN7.26118,462,018 - 118,842,442 (-)NCBI
Rnor_6.06123,183,720 - 123,577,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764802   ⟹   XP_008763024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,572,070 (-)NCBI
mRatBN7.26118,462,018 - 118,842,424 (-)NCBI
Rnor_6.06123,183,720 - 123,577,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594165   ⟹   XP_017449654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,572,070 (-)NCBI
mRatBN7.26118,462,018 - 118,842,424 (-)NCBI
Rnor_6.06123,183,720 - 123,577,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594166   ⟹   XP_017449655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,572,070 (-)NCBI
mRatBN7.26118,462,018 - 118,842,424 (-)NCBI
Rnor_6.06123,183,720 - 123,577,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112336   ⟹   XP_038968264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,470,807 (-)NCBI
mRatBN7.26118,462,018 - 118,741,115 (-)NCBI
RefSeq Acc Id: XM_039112337   ⟹   XP_038968265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,572,067 (-)NCBI
mRatBN7.26118,462,018 - 118,842,440 (-)NCBI
RefSeq Acc Id: XM_039112339   ⟹   XP_038968267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,414,253 (-)NCBI
mRatBN7.26118,462,018 - 118,675,087 (-)NCBI
RefSeq Acc Id: XM_039112340   ⟹   XP_038968268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,572,067 (-)NCBI
mRatBN7.26118,462,018 - 118,842,440 (-)NCBI
RefSeq Acc Id: XM_039112341   ⟹   XP_038968269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,452,178 (-)NCBI
mRatBN7.26118,462,018 - 118,722,518 (-)NCBI
RefSeq Acc Id: XM_039112342   ⟹   XP_038968270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,456,369 (-)NCBI
mRatBN7.26118,462,018 - 118,724,788 (-)NCBI
RefSeq Acc Id: XM_039112343   ⟹   XP_038968271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,275,291 - 124,572,070 (-)NCBI
mRatBN7.26118,538,513 - 118,842,425 (-)NCBI
RefSeq Acc Id: XM_063261967   ⟹   XP_063118037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,414,253 (-)NCBI
RefSeq Acc Id: XM_063261968   ⟹   XP_063118038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,414,253 (-)NCBI
RefSeq Acc Id: XM_063261969   ⟹   XP_063118039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,572,067 (-)NCBI
RefSeq Acc Id: XM_063261970   ⟹   XP_063118040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,452,172 (-)NCBI
RefSeq Acc Id: XM_063261971   ⟹   XP_063118041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86124,191,695 - 124,404,076 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001101517   ⟸   NM_001108047
- UniProtKB: D3ZIJ7 (UniProtKB/TrEMBL),   A6JEF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240491   ⟸   XM_006240429
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006240493   ⟸   XM_006240431
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763023   ⟸   XM_008764801
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763024   ⟸   XM_008764802
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449654   ⟸   XM_017594165
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449655   ⟸   XM_017594166
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000006604   ⟸   ENSRNOT00000006604
RefSeq Acc Id: ENSRNOP00000070786   ⟸   ENSRNOT00000083665
RefSeq Acc Id: XP_038968265   ⟸   XM_039112337
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968268   ⟸   XM_039112340
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968264   ⟸   XM_039112336
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968270   ⟸   XM_039112342
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968269   ⟸   XM_039112341
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968267   ⟸   XM_039112339
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968271   ⟸   XM_039112343
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063118039   ⟸   XM_063261969
- Peptide Label: isoform X3
- UniProtKB: A6JEF9 (UniProtKB/TrEMBL),   D3ZIJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118040   ⟸   XM_063261970
- Peptide Label: isoform X3
- UniProtKB: A6JEF9 (UniProtKB/TrEMBL),   D3ZIJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118037   ⟸   XM_063261967
- Peptide Label: isoform X3
- UniProtKB: A6JEF9 (UniProtKB/TrEMBL),   D3ZIJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118038   ⟸   XM_063261968
- Peptide Label: isoform X3
- UniProtKB: A6JEF9 (UniProtKB/TrEMBL),   D3ZIJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118041   ⟸   XM_063261971
- Peptide Label: isoform X3
- UniProtKB: A6JEF9 (UniProtKB/TrEMBL),   D3ZIJ7 (UniProtKB/TrEMBL)
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JYT8-F1-model_v2 AlphaFold A0A0G2JYT8 1-478 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694772
Promoter ID:EPDNEW_R5297
Type:multiple initiation site
Name:Foxn3_1
Description:forkhead box N3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06123,577,723 - 123,577,783EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305711 AgrOrtholog
BioCyc Gene G2FUF-36523 BioCyc
Ensembl Genes ENSRNOG00000004709 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006604 ENTREZGENE
  ENSRNOT00000006604.7 UniProtKB/TrEMBL
  ENSRNOT00000083665.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro FH_FOXN3 UniProtKB/TrEMBL
  FOXN2-4-like UniProtKB/TrEMBL
  TF_fork_head UniProtKB/TrEMBL
  TF_fork_head_CS UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:314374 UniProtKB/TrEMBL
NCBI Gene 314374 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN N3 UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED UniProtKB/TrEMBL
Pfam Fork_head UniProtKB/TrEMBL
PhenoGen Foxn3 PhenoGen
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004709 RatGTEx
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A0G2JYT8 ENTREZGENE, UniProtKB/TrEMBL
  A6JEF9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIJ7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 Foxn3  forkhead box N3  Ches1_predicted  checkpoint suppressor 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Ches1_predicted  checkpoint suppressor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED