Ppp2r5e (protein phosphatase 2 regulatory subunit B', epsilon) - Rat Genome Database

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Gene: Ppp2r5e (protein phosphatase 2 regulatory subunit B', epsilon) Rattus norvegicus
Analyze
Symbol: Ppp2r5e
Name: protein phosphatase 2 regulatory subunit B', epsilon
RGD ID: 1305657
Description: Predicted to enable protein phosphatase activator activity. Predicted to be involved in signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Biomarker of transient cerebral ischemia. Orthologous to human PPP2R5E (protein phosphatase 2 regulatory subunit B'epsilon); PARTICIPATES IN mRNA decay pathway; Wnt signaling pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC299147; protein phosphatase 2, regulatory subunit B (B56), epsilon isoform; protein phosphatase 2, regulatory subunit B', epsilon isoform; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8699,904,569 - 100,053,672 (-)NCBIGRCr8
mRatBN7.2694,168,846 - 94,317,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl694,168,846 - 94,317,872 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx694,561,718 - 94,711,228 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0694,860,234 - 95,009,753 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0694,289,097 - 94,438,615 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0698,417,974 - 98,567,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl698,417,974 - 98,566,966 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06107,836,104 - 107,985,250 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4698,047,316 - 98,197,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1698,053,853 - 98,201,066 (-)NCBI
Celera692,596,832 - 92,745,242 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dimethylarsinous acid  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Echimidine  (ISO)
elemental selenium  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
glafenine  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
inulin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
methapyrilene  (EXP,ISO)
methidathion  (ISO)
methoxychlor  (EXP)
mitomycin C  (ISO)
monocrotaline  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nefazodone  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
tamoxifen  (ISO)
taurine  (ISO)
toluene  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
triptonide  (ISO)
tunicamycin  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Proteomic Analysis of Hydroxysafflor Yellow A Against Cerebral Ischemia/Reperfusion Injury in Rats. Xu H, etal., Rejuvenation Res. 2019 Dec;22(6):503-512. doi: 10.1089/rej.2018.2145. Epub 2019 Mar 19.

Genomics

Comparative Map Data
Ppp2r5e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8699,904,569 - 100,053,672 (-)NCBIGRCr8
mRatBN7.2694,168,846 - 94,317,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl694,168,846 - 94,317,872 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx694,561,718 - 94,711,228 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0694,860,234 - 95,009,753 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0694,289,097 - 94,438,615 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0698,417,974 - 98,567,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl698,417,974 - 98,566,966 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06107,836,104 - 107,985,250 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4698,047,316 - 98,197,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1698,053,853 - 98,201,066 (-)NCBI
Celera692,596,832 - 92,745,242 (-)NCBICelera
Cytogenetic Map6q24NCBI
PPP2R5E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381463,371,364 - 63,543,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1463,371,364 - 63,543,377 (-)EnsemblGRCh38hg38GRCh38
GRCh371463,838,082 - 64,010,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361462,911,108 - 63,079,832 (-)NCBINCBI36Build 36hg18NCBI36
Build 341462,911,107 - 63,079,832NCBI
Celera1443,892,051 - 44,060,782 (-)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1444,007,943 - 44,177,149 (-)NCBIHuRef
CHM1_11463,780,369 - 63,949,091 (-)NCBICHM1_1
T2T-CHM13v2.01457,578,735 - 57,750,775 (-)NCBIT2T-CHM13v2.0
Ppp2r5e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391275,496,237 - 75,643,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1275,497,655 - 75,643,019 (-)EnsemblGRCm39 Ensembl
GRCm381275,449,463 - 75,596,237 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1275,450,881 - 75,596,245 (-)EnsemblGRCm38mm10GRCm38
MGSCv371276,551,868 - 76,697,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361276,369,721 - 76,515,040 (-)NCBIMGSCv36mm8
Celera1276,535,179 - 76,696,642 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.75NCBI
Ppp2r5e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554666,263,338 - 6,420,685 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554666,263,338 - 6,420,685 (+)NCBIChiLan1.0ChiLan1.0
PPP2R5E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21564,477,774 - 64,648,588 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11463,694,290 - 63,865,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01443,947,793 - 44,119,020 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11462,207,182 - 62,373,711 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1462,207,192 - 62,373,711 (-)Ensemblpanpan1.1panPan2
PPP2R5E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1837,945,350 - 38,088,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl837,945,331 - 38,088,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha837,663,916 - 37,780,994 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0838,172,395 - 38,314,626 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl838,172,672 - 38,314,720 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1837,789,055 - 37,931,745 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0837,868,630 - 38,004,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0838,221,858 - 38,364,575 (-)NCBIUU_Cfam_GSD_1.0
Ppp2r5e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864066,818,311 - 66,961,292 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364957,230,786 - 7,372,556 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364957,230,405 - 7,372,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP2R5E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1194,505,025 - 194,656,164 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11194,505,535 - 194,653,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,594,665 - 216,628,082 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP2R5E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12440,548,986 - 40,730,451 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2440,553,635 - 40,633,392 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605328,759,264 - 28,930,715 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp2r5e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473437,510,255 - 37,675,482 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473437,509,711 - 37,678,807 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp2r5e
527 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1082
Count of miRNA genes:343
Interacting mature miRNAs:481
Transcripts:ENSRNOT00000006755
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat

Markers in Region
RH132173  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2694,172,155 - 94,172,341 (+)MAPPERmRatBN7.2
Rnor_6.0698,421,283 - 98,421,468NCBIRnor6.0
Rnor_5.06107,839,413 - 107,839,598UniSTSRnor5.0
RGSC_v3.4698,050,625 - 98,050,810UniSTSRGSC3.4
Celera692,600,141 - 92,600,326UniSTS
RH 3.4 Map6668.9UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 32 18 18 18 1 2 74 33 41 11 1
Low 17 25 23 1 23 7 9 2 7
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000006755   ⟹   ENSRNOP00000006755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl694,168,846 - 94,317,872 (-)Ensembl
Rnor_6.0 Ensembl698,417,974 - 98,566,966 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077715   ⟹   ENSRNOP00000068628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl694,178,021 - 94,317,872 (-)Ensembl
Rnor_6.0 Ensembl698,422,300 - 98,566,523 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094518   ⟹   ENSRNOP00000079138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl694,168,846 - 94,317,872 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105642   ⟹   ENSRNOP00000089462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl694,168,846 - 94,269,697 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112533   ⟹   ENSRNOP00000097176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl694,168,846 - 94,317,872 (-)Ensembl
RefSeq Acc Id: NM_001106740   ⟹   NP_001100210
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8699,904,569 - 100,053,573 (-)NCBI
mRatBN7.2694,168,846 - 94,317,872 (-)NCBI
Rnor_6.0698,417,974 - 98,566,966 (-)NCBI
Rnor_5.06107,836,104 - 107,985,250 (-)NCBI
RGSC_v3.4698,047,316 - 98,197,549 (-)RGD
Celera692,596,832 - 92,745,242 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240222   ⟹   XP_006240284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8699,907,678 - 100,053,672 (-)NCBI
mRatBN7.2694,169,395 - 94,317,478 (-)NCBI
Rnor_6.0698,418,523 - 98,567,016 (-)NCBI
Rnor_5.06107,836,104 - 107,985,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240223   ⟹   XP_006240285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8699,907,678 - 100,053,652 (-)NCBI
mRatBN7.2694,169,395 - 94,317,477 (-)NCBI
Rnor_6.0698,418,523 - 98,567,016 (-)NCBI
Rnor_5.06107,836,104 - 107,985,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240224   ⟹   XP_006240286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8699,907,678 - 100,032,670 (-)NCBI
mRatBN7.2694,169,395 - 94,271,661 (-)NCBI
Rnor_6.0698,418,523 - 98,518,780 (-)NCBI
Rnor_5.06107,836,104 - 107,985,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112010   ⟹   XP_038967938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8699,907,678 - 99,980,985 (-)NCBI
mRatBN7.2694,169,395 - 94,245,288 (-)NCBI
RefSeq Acc Id: NP_001100210   ⟸   NM_001106740
- UniProtKB: D3ZHI9 (UniProtKB/TrEMBL),   A6HC79 (UniProtKB/TrEMBL),   A0A0G2JTA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240285   ⟸   XM_006240223
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTA1 (UniProtKB/TrEMBL),   A0A8I5ZMG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240284   ⟸   XM_006240222
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTA1 (UniProtKB/TrEMBL),   A0A8I5ZMG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240286   ⟸   XM_006240224
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JTA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006755   ⟸   ENSRNOT00000006755
RefSeq Acc Id: ENSRNOP00000068628   ⟸   ENSRNOT00000077715
RefSeq Acc Id: XP_038967938   ⟸   XM_039112010
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A9W8 (UniProtKB/TrEMBL),   A0A0G2JTA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079138   ⟸   ENSRNOT00000094518
RefSeq Acc Id: ENSRNOP00000089462   ⟸   ENSRNOT00000105642
RefSeq Acc Id: ENSRNOP00000097176   ⟸   ENSRNOT00000112533

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTA1-F1-model_v2 AlphaFold A0A0G2JTA1 1-467 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694672
Promoter ID:EPDNEW_R5195
Type:initiation region
Name:Ppp2r5e_1
Description:protein phosphatase 2 regulatory subunit B', epsilon
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0698,567,008 - 98,567,068EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305657 AgrOrtholog
BioCyc Gene G2FUF-37081 BioCyc
Ensembl Genes ENSRNOG00000005045 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006755 ENTREZGENE
  ENSRNOT00000006755.7 UniProtKB/TrEMBL
  ENSRNOT00000077715.2 UniProtKB/TrEMBL
  ENSRNOT00000094518.1 UniProtKB/TrEMBL
  ENSRNOT00000105642.1 UniProtKB/TrEMBL
  ENSRNOT00000112533.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  PP2A_B56 UniProtKB/TrEMBL
KEGG Report rno:299147 UniProtKB/TrEMBL
NCBI Gene 299147 ENTREZGENE
PANTHER B56 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 56 KDA REGULATORY SUBUNIT EPSILON ISOFORM UniProtKB/TrEMBL
Pfam B56 UniProtKB/TrEMBL
PhenoGen Ppp2r5e PhenoGen
PIRSF PP2A_B56 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005045 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2JTA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9W8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GLY3_RAT UniProtKB/TrEMBL
  A6HC79 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHI9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Ppp2r5e  protein phosphatase 2 regulatory subunit B', epsilon  Ppp2r5e  protein phosphatase 2, regulatory subunit B', epsilon isoform  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Ppp2r5e  protein phosphatase 2, regulatory subunit B', epsilon isoform  Ppp2r5e  protein phosphatase 2, regulatory subunit B (B56), epsilon isoform   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ppp2r5e  protein phosphatase 2, regulatory subunit B (B56), epsilon isoform   Ppp2r5e_predicted  protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ppp2r5e_predicted  protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted)      Symbol and Name status set to approved 70820 APPROVED