Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prostatic Neoplasms | | ISO | BAZ2A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25485837 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prostatic Neoplasms | | ISO | BAZ2A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25485837 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:11532953 | PMID:12198165 | PMID:12368916 | PMID:16085498 | PMID:16678107 | PMID:18600236 | PMID:19578370 | PMID:20168299 | PMID:22368283 |
Baz2a (Rattus norvegicus - Norway rat) |
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BAZ2A (Homo sapiens - human) |
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Baz2a (Mus musculus - house mouse) |
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Baz2a (Chinchilla lanigera - long-tailed chinchilla) |
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BAZ2A (Pan paniscus - bonobo/pygmy chimpanzee) |
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BAZ2A (Canis lupus familiaris - dog) |
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Baz2a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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BAZ2A (Sus scrofa - pig) |
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BAZ2A (Chlorocebus sabaeus - green monkey) |
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Baz2a (Heterocephalus glaber - naked mole-rat) |
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Variants in Baz2a
136 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH69868 |
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BI291455 |
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RH124269 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 33 | 38 | 22 | 19 | 22 | 1 | 2 | 74 | 35 | 41 | 11 | 1 |
Low | 10 | 19 | 19 | 19 | 7 | 9 | 7 | ||||||
Below cutoff |
RefSeq Transcripts | NM_001107158 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039078958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078959 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078960 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078961 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078962 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078965 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078966 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063263394 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063263395 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063263396 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH474104 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000079383 ⟹ ENSRNOP00000071731 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000107364 ⟹ ENSRNOP00000089740 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000111243 ⟹ ENSRNOP00000079756 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001107158 ⟹ NP_001100628 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039078958 ⟹ XP_038934886 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078959 ⟹ XP_038934887 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078960 ⟹ XP_038934888 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078961 ⟹ XP_038934889 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078962 ⟹ XP_038934890 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078965 ⟹ XP_038934893 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078966 ⟹ XP_038934894 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078968 ⟹ XP_038934896 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063263394 ⟹ XP_063119464 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063263395 ⟹ XP_063119465 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063263396 ⟹ XP_063119466 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001100628 | (Get FASTA) | NCBI Sequence Viewer |
XP_038934886 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934887 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934888 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934889 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934890 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934893 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934894 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934896 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063119464 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063119465 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063119466 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL84888 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000071731 | ||
ENSRNOP00000071731.2 | |||
ENSRNOP00000079756 | |||
ENSRNOP00000079756.1 | |||
ENSRNOP00000089740 | |||
ENSRNOP00000089740.1 |
RefSeq Acc Id: | NP_001100628 ⟸ NM_001107158 |
- UniProtKB: | A0A8I6A7X6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000071731 ⟸ ENSRNOT00000079383 |
RefSeq Acc Id: | XP_038934890 ⟸ XM_039078962 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I5ZP85 (UniProtKB/TrEMBL), A0A8I6A7X6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934893 ⟸ XM_039078965 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I5ZP85 (UniProtKB/TrEMBL), A0A8I6A7X6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934886 ⟸ XM_039078958 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6A7X6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934887 ⟸ XM_039078959 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6A7X6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934888 ⟸ XM_039078960 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6A7X6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934894 ⟸ XM_039078966 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I5ZP85 (UniProtKB/TrEMBL), A0A8I6A7X6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934889 ⟸ XM_039078961 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I5ZP85 (UniProtKB/TrEMBL), A0A8I6A7X6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934896 ⟸ XM_039078968 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | ENSRNOP00000079756 ⟸ ENSRNOT00000111243 |
RefSeq Acc Id: | ENSRNOP00000089740 ⟸ ENSRNOT00000107364 |
RefSeq Acc Id: | XP_063119464 ⟸ XM_063263394 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063119465 ⟸ XM_063263395 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063119466 ⟸ XM_063263396 |
- Peptide Label: | isoform X5 |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1305037 | AgrOrtholog |
BioCyc Gene | G2FUF-35392 | BioCyc |
Ensembl Genes | ENSRNOG00000053881 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000079383.2 | UniProtKB/TrEMBL |
ENSRNOT00000107364.1 | UniProtKB/TrEMBL | |
ENSRNOT00000111243.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.920.10 | UniProtKB/TrEMBL |
3.30.40.10 | UniProtKB/TrEMBL | |
InterPro | AT_hook_DNA-bd_motif | UniProtKB/TrEMBL |
BAZ2A/B_Bromo | UniProtKB/TrEMBL | |
Bromodomain | UniProtKB/TrEMBL | |
Bromodomain-like_sf | UniProtKB/TrEMBL | |
Bromodomain_CS | UniProtKB/TrEMBL | |
DDT_dom_superfamily | UniProtKB/TrEMBL | |
DNA-bd_integrase-typ | UniProtKB/TrEMBL | |
Methyl_CpG_DNA-bd | UniProtKB/TrEMBL | |
TIP5 | UniProtKB/TrEMBL | |
WHIM1_dom | UniProtKB/TrEMBL | |
WHIM2_dom | UniProtKB/TrEMBL | |
Znf_FYVE_PHD | UniProtKB/TrEMBL | |
Znf_PHD | UniProtKB/TrEMBL | |
Znf_PHD-finger | UniProtKB/TrEMBL | |
Znf_RING/FYVE/PHD | UniProtKB/TrEMBL | |
KEGG Report | rno:304601 | UniProtKB/TrEMBL |
NCBI Gene | 304601 | ENTREZGENE |
PANTHER | PTHR45915:SF5 | UniProtKB/TrEMBL |
TRANSCRIPTION INTERMEDIARY FACTOR | UniProtKB/TrEMBL | |
Pfam | Bromodomain | UniProtKB/TrEMBL |
DDT | UniProtKB/TrEMBL | |
MBD | UniProtKB/TrEMBL | |
PHD | UniProtKB/TrEMBL | |
WHIM1 | UniProtKB/TrEMBL | |
WSD | UniProtKB/TrEMBL | |
PhenoGen | Baz2a | PhenoGen |
PRINTS | BROMODOMAIN | UniProtKB/TrEMBL |
PROSITE | BROMODOMAIN_1 | UniProtKB/TrEMBL |
BROMODOMAIN_2 | UniProtKB/TrEMBL | |
DDT | UniProtKB/TrEMBL | |
MBD | UniProtKB/TrEMBL | |
ZF_PHD_2 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000053881 | RatGTEx |
SMART | AT_hook | UniProtKB/TrEMBL |
BROMO | UniProtKB/TrEMBL | |
DDT | UniProtKB/TrEMBL | |
MBD | UniProtKB/TrEMBL | |
PHD | UniProtKB/TrEMBL | |
Superfamily-SCOP | DNA-binding_integrase-type | UniProtKB/TrEMBL |
SSF47370 | UniProtKB/TrEMBL | |
SSF57903 | UniProtKB/TrEMBL | |
UniProt | A0A0G2K178_RAT | UniProtKB/TrEMBL |
A0A8I5ZP85 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6A7X6 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KSA4_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-04-30 | Baz2a | bromodomain adjacent to zinc finger domain, 2A | Baz2a_predicted | bromodomain adjacent to zinc finger domain, 2A (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Baz2a_predicted | bromodomain adjacent to zinc finger domain, 2A (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |