Adgra3 (adhesion G protein-coupled receptor A3) - Rat Genome Database

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Gene: Adgra3 (adhesion G protein-coupled receptor A3) Rattus norvegicus
Analyze
Symbol: Adgra3
Name: adhesion G protein-coupled receptor A3
RGD ID: 1304914
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to be active in external side of plasma membrane. Orthologous to human ADGRA3 (adhesion G protein-coupled receptor A3); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G protein-coupled receptor 125; Gpr125; LOC305408; probable G-protein coupled receptor 125
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81465,085,418 - 65,188,949 (+)NCBIGRCr8
mRatBN7.21460,874,719 - 60,976,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1460,874,715 - 60,976,332 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01464,686,677 - 64,786,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1464,686,793 - 64,786,497 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01464,778,448 - 64,878,576 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41465,770,256 - 65,778,671 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11465,772,017 - 65,875,273 (+)NCBI
Celera1459,953,004 - 60,048,910 (+)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17882221  


Genomics

Comparative Map Data
Adgra3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81465,085,418 - 65,188,949 (+)NCBIGRCr8
mRatBN7.21460,874,719 - 60,976,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1460,874,715 - 60,976,332 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01464,686,677 - 64,786,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1464,686,793 - 64,786,497 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01464,778,448 - 64,878,576 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41465,770,256 - 65,778,671 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11465,772,017 - 65,875,273 (+)NCBI
Celera1459,953,004 - 60,048,910 (+)NCBICelera
Cytogenetic Map14q11NCBI
ADGRA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38422,387,376 - 22,516,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl422,345,071 - 22,516,066 (-)EnsemblGRCh38hg38GRCh38
GRCh37422,388,999 - 22,517,689 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36421,998,097 - 22,126,770 (-)NCBINCBI36Build 36hg18NCBI36
Build 34422,065,267 - 22,193,941NCBI
Celera422,839,590 - 22,967,882 (-)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef421,733,690 - 21,862,148 (-)NCBIHuRef
CHM1_1422,387,160 - 22,515,695 (-)NCBICHM1_1
T2T-CHM13v2.0422,369,218 - 22,497,870 (-)NCBIT2T-CHM13v2.0
Adgra3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39550,117,293 - 50,216,338 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl550,117,298 - 50,216,348 (-)EnsemblGRCm39 Ensembl
GRCm38549,959,951 - 50,058,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl549,959,956 - 50,059,006 (-)EnsemblGRCm38mm10GRCm38
MGSCv37550,351,190 - 50,450,235 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36550,248,199 - 50,349,457 (-)NCBIMGSCv36mm8
Celera547,351,571 - 47,450,370 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map526.85NCBI
Adgra3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554802,322,783 - 2,412,334 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554802,322,783 - 2,408,241 (+)NCBIChiLan1.0ChiLan1.0
ADGRA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2322,642,660 - 22,770,788 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1422,839,293 - 22,967,556 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0416,796,139 - 16,924,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1422,087,916 - 22,215,699 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl422,088,243 - 22,215,929 (-)Ensemblpanpan1.1panPan2
ADGRA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1387,320,113 - 87,435,351 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl387,321,872 - 87,435,312 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha389,830,641 - 89,953,215 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0388,296,330 - 88,417,367 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl388,296,050 - 88,417,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1387,445,836 - 87,568,635 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0387,532,942 - 87,652,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0387,910,100 - 88,031,380 (+)NCBIUU_Cfam_GSD_1.0
Adgra3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528552,829,808 - 52,935,931 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364776,531,501 - 6,638,135 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364776,531,506 - 6,637,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl816,666,606 - 16,787,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1816,666,409 - 16,787,958 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2816,905,380 - 16,910,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADGRA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12727,786,029 - 27,915,242 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2727,856,636 - 27,915,378 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604774,349,494 - 74,478,695 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adgra3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247559,661,249 - 9,800,057 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247559,661,228 - 9,800,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Adgra3
521 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:171
Interacting mature miRNAs:202
Transcripts:ENSRNOT00000005894, ENSRNOT00000036646
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat

Markers in Region
RH134656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21460,958,445 - 60,958,625 (+)MAPPERmRatBN7.2
Rnor_6.01464,768,875 - 64,769,054NCBIRnor6.0
Rnor_5.01464,860,638 - 64,860,817UniSTSRnor5.0
RGSC_v3.41465,854,385 - 65,854,564UniSTSRGSC3.4
RH 3.4 Map14483.48UniSTS
Cytogenetic Map14q11UniSTS
RH140456  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21460,975,872 - 60,976,054 (+)MAPPERmRatBN7.2
Rnor_6.01464,786,348 - 64,786,529NCBIRnor6.0
Rnor_5.01464,878,111 - 64,878,292UniSTSRnor5.0
RGSC_v3.41465,872,418 - 65,872,599UniSTSRGSC3.4
Celera1460,048,445 - 60,048,626UniSTS
RH 3.4 Map14481.18UniSTS
Cytogenetic Map14q11UniSTS
AU049732  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21460,930,219 - 60,930,394 (+)MAPPERmRatBN7.2
Rnor_6.01464,994,029 - 64,994,203NCBIRnor6.0
Rnor_5.01465,083,384 - 65,083,558UniSTSRnor5.0
RGSC_v3.41465,825,557 - 65,825,731UniSTSRGSC3.4
Celera1460,008,105 - 60,008,279UniSTS
Cytogenetic Map14q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 16 8 8 1 1 55 35 34 6 1
Low 1 17 41 33 19 33 7 10 19 7 5 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005894   ⟹   ENSRNOP00000005894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1464,686,793 - 64,739,694 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000036646   ⟹   ENSRNOP00000037291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1460,874,715 - 60,976,332 (+)Ensembl
Rnor_6.0 Ensembl1464,686,910 - 64,786,497 (+)Ensembl
RefSeq Acc Id: XM_039092758   ⟹   XP_038948686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81465,085,418 - 65,188,949 (+)NCBI
mRatBN7.21460,874,719 - 60,976,263 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038948686 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99906 (Get FASTA)   NCBI Sequence Viewer  
  EDL99907 (Get FASTA)   NCBI Sequence Viewer  
  EDL99908 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037291
  ENSRNOP00000037291.7
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000037291   ⟸   ENSRNOT00000036646
RefSeq Acc Id: ENSRNOP00000005894   ⟸   ENSRNOT00000005894
RefSeq Acc Id: XP_038948686   ⟸   XM_039092758
- UniProtKB: A0A0G2JSU2 (UniProtKB/TrEMBL),   A6IJJ3 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 2 profile   Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JSU2-F1-model_v2 AlphaFold A0A0G2JSU2 1-1306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699344
Promoter ID:EPDNEW_R9868
Type:initiation region
Name:Adgra3_1
Description:adhesion G protein-coupled receptor A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01464,686,698 - 64,686,758EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304914 AgrOrtholog
BioCyc Gene G2FUF-15575 BioCyc
Ensembl Genes ENSRNOG00000004279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036646.7 UniProtKB/TrEMBL
Gene3D-CATH 2.60.220.50 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  4.10.1240.10 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPS_dom UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
NCBI Gene 305408 ENTREZGENE
PANTHER ADHESION G PROTEIN-COUPLED RECEPTOR A3 UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PhenoGen Adgra3 PhenoGen
PROSITE G_PROTEIN_RECEP_F2_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004279 RatGTEx
SMART GPS UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF111418 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2JSU2 ENTREZGENE, UniProtKB/TrEMBL
  A6IJJ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-16 Adgra3  adhesion G protein-coupled receptor A3  Gpr125  G protein-coupled receptor 125  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Gpr125  G protein-coupled receptor 125   Gpr125_predicted  G protein-coupled receptor 125 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gpr125_predicted  G protein-coupled receptor 125 (predicted)      Symbol and Name status set to approved 70820 APPROVED