Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | exfoliation syndrome | | ISO | AGPAT1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:28553957 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | exfoliation syndrome | | ISO | AGPAT1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:28553957 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
5. | SMPDB Annotation Import Pipeline | Pipeline to import SMPDB annotations from SMPDB into RGD |
6. | GOA pipeline | RGD automated data pipeline |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:9212163 | PMID:9299423 | PMID:9461603 | PMID:12477932 | PMID:19946888 | PMID:21873652 |
Agpat1 (Rattus norvegicus - Norway rat) |
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AGPAT1 (Homo sapiens - human) |
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Agpat1 (Mus musculus - house mouse) |
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Agpat1 (Chinchilla lanigera - long-tailed chinchilla) |
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AGPAT1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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AGPAT1 (Canis lupus familiaris - dog) |
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Agpat1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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AGPAT1 (Sus scrofa - pig) |
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AGPAT1 (Chlorocebus sabaeus - green monkey) |
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Agpat1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Agpat1
41 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
BF390804 |
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BI284306 |
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RH135211 |
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RH139384 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 35 | 31 | 22 | 9 | 22 | 3 | 74 | 35 | 39 | 11 | ||
Low | 8 | 26 | 19 | 10 | 19 | 8 | 8 | 2 | 8 | ||||
Below cutoff |
RefSeq Transcripts | NM_212458 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006255974 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006255975 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039098932 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279349 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279350 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279352 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC085852 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BX883044 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000000500 ⟹ ENSRNOP00000000500 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000084557 ⟹ ENSRNOP00000072184 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000088079 ⟹ ENSRNOP00000072161 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000088734 ⟹ ENSRNOP00000070829 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000091491 ⟹ ENSRNOP00000069153 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_212458 ⟹ NP_997623 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006255974 ⟹ XP_006256036 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006255975 ⟹ XP_006256037 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039098932 ⟹ XP_038954860 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063279349 ⟹ XP_063135419 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063279350 ⟹ XP_063135420 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063279352 ⟹ XP_063135422 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_997623 | (Get FASTA) | NCBI Sequence Viewer |
XP_006256036 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256037 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038954860 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135419 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135420 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135422 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH85852 | (Get FASTA) | NCBI Sequence Viewer |
CAE83961 | (Get FASTA) | NCBI Sequence Viewer | |
EDL83405 | (Get FASTA) | NCBI Sequence Viewer | |
EDL83406 | (Get FASTA) | NCBI Sequence Viewer | |
EDL83407 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000000500.5 |
RefSeq Acc Id: | NP_997623 ⟸ NM_212458 |
- UniProtKB: | Q6MG85 (UniProtKB/TrEMBL), Q5U2V3 (UniProtKB/TrEMBL), A6KTH1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256037 ⟸ XM_006255975 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q6MG85 (UniProtKB/TrEMBL), Q5U2V3 (UniProtKB/TrEMBL), A6KTH1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256036 ⟸ XM_006255974 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q6MG85 (UniProtKB/TrEMBL), Q5U2V3 (UniProtKB/TrEMBL), A6KTH1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000072184 ⟸ ENSRNOT00000084557 |
RefSeq Acc Id: | ENSRNOP00000000500 ⟸ ENSRNOT00000000500 |
RefSeq Acc Id: | ENSRNOP00000069153 ⟸ ENSRNOT00000091491 |
RefSeq Acc Id: | ENSRNOP00000072161 ⟸ ENSRNOT00000088079 |
RefSeq Acc Id: | ENSRNOP00000070829 ⟸ ENSRNOT00000088734 |
RefSeq Acc Id: | XP_038954860 ⟸ XM_039098932 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q6MG85 (UniProtKB/TrEMBL), Q5U2V3 (UniProtKB/TrEMBL), A6KTH1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063135422 ⟸ XM_063279352 |
- Peptide Label: | isoform X1 |
- UniProtKB: | F7EQT9 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063135419 ⟸ XM_063279349 |
- Peptide Label: | isoform X1 |
- UniProtKB: | F7EQT9 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063135420 ⟸ XM_063279350 |
- Peptide Label: | isoform X1 |
- UniProtKB: | F7EQT9 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6MG85-F1-model_v2 | AlphaFold | Q6MG85 | 1-284 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701346 | ||||||||
Promoter ID: | EPDNEW_R11866 | ||||||||
Type: | initiation region | ||||||||
Name: | Agpat1_2 | ||||||||
Description: | 1-acylglycerol-3-phosphate O-acyltransferase 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R11867 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 13701343 | ||||||||
Promoter ID: | EPDNEW_R11867 | ||||||||
Type: | initiation region | ||||||||
Name: | Agpat1_1 | ||||||||
Description: | 1-acylglycerol-3-phosphate O-acyltransferase 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R11866 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1303287 | AgrOrtholog |
BioCyc Gene | G2FUF-4586 | BioCyc |
BioCyc Pathway | PWY-5667 [CDP-diacylglycerol biosynthesis I] | BioCyc |
PWY-7411 [phosphatidate biosynthesis (yeast)] | BioCyc | |
PWY-7417 [phospholipid remodeling (phosphatidate, yeast)] | BioCyc | |
PWY-7782 [plasmalogen biosynthesis] | BioCyc | |
PWY-8053 [anandamide biosynthesis II] | BioCyc | |
TRIGLSYN-PWY [diacylglycerol and triacylglycerol biosynthesis] | BioCyc | |
BioCyc Pathway Image | PWY-5667 | BioCyc |
PWY-7411 | BioCyc | |
PWY-7417 | BioCyc | |
PWY-7782 | BioCyc | |
PWY-8053 | BioCyc | |
TRIGLSYN-PWY | BioCyc | |
Ensembl Genes | ENSRNOG00000000437 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000000500.8 | UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7189891 | IMAGE-MGC_LOAD |
InterPro | Acyltransferase | UniProtKB/TrEMBL |
AGP_acyltrans | UniProtKB/TrEMBL | |
KEGG Report | rno:406165 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:94573 | IMAGE-MGC_LOAD |
NCBI Gene | 406165 | ENTREZGENE |
PANTHER | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE | UniProtKB/TrEMBL |
1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA | UniProtKB/TrEMBL | |
Pfam | Acyltransferase | UniProtKB/TrEMBL |
PhenoGen | Agpat1 | PhenoGen |
RatGTEx | ENSRNOG00000000437 | RatGTEx |
SMART | PlsC | UniProtKB/TrEMBL |
Superfamily-SCOP | Glycerol-3-phosphate (1)-acyltransferase | UniProtKB/TrEMBL |
UniProt | A6KTH1 | ENTREZGENE, UniProtKB/TrEMBL |
F7EQT9 | ENTREZGENE, UniProtKB/TrEMBL | |
Q5U2V3 | ENTREZGENE, UniProtKB/TrEMBL | |
Q6MG85 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2013-02-13 | Agpat1 | 1-acylglycerol-3-phosphate O-acyltransferase 1 | Agpat1 | 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-02-26 | Agpat1 | 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) | Agpat1 | 1-acylglycerol-3-phosphate O-acyltransferase 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-09-30 | Agpat1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |