Tacc1 (transforming, acidic coiled-coil containing protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tacc1 (transforming, acidic coiled-coil containing protein 1) Rattus norvegicus
Analyze
Symbol: Tacc1
Name: transforming, acidic coiled-coil containing protein 1
RGD ID: 1303120
Description: Predicted to enable several functions, including nuclear receptor binding activity; nuclear receptor coactivator activity; and peroxisome proliferator activated receptor binding activity. Predicted to be involved in cell population proliferation; cerebral cortex development; and microtubule cytoskeleton organization. Predicted to act upstream of or within interkinetic nuclear migration; neurogenesis; and regulation of microtubule-based process. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human TACC1 (transforming acidic coiled-coil containing protein 1); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Tacc1a; transforming acidic coiled-coil-containing protein 1; transforming, acidic coiled-coil containing protein 1a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81673,515,016 - 73,598,395 (+)NCBIGRCr8
mRatBN7.21666,812,232 - 66,895,736 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,812,295 - 66,895,733 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1672,122,245 - 72,172,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01675,528,196 - 75,578,884 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,776,526 - 70,827,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01671,596,970 - 71,681,126 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,629,525 - 71,681,126 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01671,252,762 - 71,335,563 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41671,241,785 - 71,304,959 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11671,242,049 - 71,305,224 (+)NCBI
Celera1664,752,412 - 64,802,875 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-hexachlorocyclohexane  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium dichromate  (EXP)
tamoxifen  (ISO)
thioacetamide  (EXP)
torcetrapib  (ISO)
trichostatin A  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Aurora B -TACC1 protein complex in cytokinesis. Delaval B, etal., Oncogene 2004 Jun 3;23(26):4516-22.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Structure-function evolution of the transforming acidic coiled coil genes revealed by analysis of phylogenetically diverse organisms. Still IH, etal., BMC Evol Biol 2004 Jun 18;4(1):16.
Additional References at PubMed
PMID:8889548   PMID:16778019   PMID:17920017   PMID:20078863  


Genomics

Comparative Map Data
Tacc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81673,515,016 - 73,598,395 (+)NCBIGRCr8
mRatBN7.21666,812,232 - 66,895,736 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,812,295 - 66,895,733 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1672,122,245 - 72,172,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01675,528,196 - 75,578,884 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,776,526 - 70,827,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01671,596,970 - 71,681,126 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,629,525 - 71,681,126 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01671,252,762 - 71,335,563 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41671,241,785 - 71,304,959 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11671,242,049 - 71,305,224 (+)NCBI
Celera1664,752,412 - 64,802,875 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
TACC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38838,728,582 - 38,853,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl838,728,186 - 38,853,028 (+)EnsemblGRCh38hg38GRCh38
GRCh37838,586,100 - 38,710,546 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36838,763,938 - 38,829,703 (+)NCBINCBI36Build 36hg18NCBI36
Build 34838,763,937 - 38,829,702NCBI
Celera837,539,007 - 37,663,880 (+)NCBICelera
Cytogenetic Map8p11.22NCBI
HuRef837,121,058 - 37,245,998 (+)NCBIHuRef
CHM1_1838,787,711 - 38,912,550 (+)NCBICHM1_1
T2T-CHM13v2.0839,005,551 - 39,130,036 (+)NCBIT2T-CHM13v2.0
Tacc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39825,644,568 - 25,730,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl825,644,568 - 25,746,604 (-)EnsemblGRCm39 Ensembl
GRCm38825,154,552 - 25,256,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl825,154,552 - 25,256,588 (-)EnsemblGRCm38mm10GRCm38
MGSCv37826,265,024 - 26,311,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36826,620,097 - 26,666,994 (-)NCBIMGSCv36mm8
Celera826,621,682 - 26,668,549 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map813.7NCBI
Tacc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546314,344,010 - 14,405,174 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546314,314,201 - 14,409,848 (+)NCBIChiLan1.0ChiLan1.0
TACC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2757,290,547 - 57,415,122 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1833,007,787 - 33,132,605 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0838,029,394 - 38,154,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1835,205,047 - 35,329,134 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl835,219,219 - 35,329,134 (+)Ensemblpanpan1.1panPan2
TACC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11626,677,717 - 26,797,236 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1626,682,327 - 26,797,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1627,198,235 - 27,317,459 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01628,508,867 - 28,628,253 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1628,513,461 - 28,627,972 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11626,802,061 - 26,891,394 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01627,379,067 - 27,498,300 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01627,417,631 - 27,537,073 (-)NCBIUU_Cfam_GSD_1.0
Tacc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494349,303,964 - 49,391,262 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367102,042,671 - 2,157,249 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11547,749,079 - 47,861,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21554,862,923 - 54,911,509 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TACC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1836,752,966 - 36,871,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl836,774,647 - 36,866,586 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660525,108,644 - 5,235,356 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tacc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247804,771,789 - 4,847,317 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247804,769,270 - 4,886,475 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tacc1
424 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:613
Count of miRNA genes:274
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000035347
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

Markers in Region
D16Got66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,858,880 - 66,859,095 (+)MAPPERmRatBN7.2
Rnor_6.01671,643,358 - 71,643,572NCBIRnor6.0
Rnor_5.01671,298,290 - 71,298,504UniSTSRnor5.0
RGSC_v3.41671,267,882 - 71,268,097RGDRGSC3.4
RGSC_v3.41671,267,883 - 71,268,097UniSTSRGSC3.4
RGSC_v3.11671,268,148 - 71,268,362RGD
Celera1664,766,097 - 64,766,311UniSTS
RH 3.4 Map16628.4UniSTS
RH 3.4 Map16628.4RGD
RH 2.0 Map16739.6RGD
Cytogenetic Map16q12.4UniSTS
BE113007  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,894,770 - 66,894,927 (+)MAPPERmRatBN7.2
Rnor_6.01671,680,164 - 71,680,320NCBIRnor6.0
Rnor_5.01671,334,601 - 71,334,757UniSTSRnor5.0
RGSC_v3.41671,303,996 - 71,304,152UniSTSRGSC3.4
Celera1664,801,913 - 64,802,069UniSTS
RH 3.4 Map16624.3UniSTS
Cytogenetic Map16q12.4UniSTS
AA956912  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,894,383 - 66,894,512 (+)MAPPERmRatBN7.2
Rnor_6.01671,679,777 - 71,679,905NCBIRnor6.0
Rnor_5.01671,334,214 - 71,334,342UniSTSRnor5.0
RGSC_v3.41671,303,609 - 71,303,737UniSTSRGSC3.4
Celera1664,801,526 - 64,801,654UniSTS
RH 3.4 Map16632.8UniSTS
Cytogenetic Map16q12.4UniSTS
AI008689  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,895,245 - 66,895,407 (+)MAPPERmRatBN7.2
Rnor_6.01671,680,639 - 71,680,800NCBIRnor6.0
Rnor_5.01671,335,076 - 71,335,237UniSTSRnor5.0
RGSC_v3.41671,304,472 - 71,304,633UniSTSRGSC3.4
Celera1664,802,388 - 64,802,549UniSTS
RH 3.4 Map16624.5UniSTS
Cytogenetic Map16q12.4UniSTS
RH132384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,869,351 - 66,869,552 (+)MAPPERmRatBN7.2
Rnor_6.01671,653,829 - 71,654,029NCBIRnor6.0
Rnor_5.01671,308,761 - 71,308,961UniSTSRnor5.0
RGSC_v3.41671,278,231 - 71,278,431UniSTSRGSC3.4
Celera1664,776,568 - 64,776,768UniSTS
RH 3.4 Map16633.2UniSTS
Cytogenetic Map16q12.4UniSTS
RH137203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,894,905 - 66,895,447 (+)MAPPERmRatBN7.2
Rnor_6.01671,680,299 - 71,680,840NCBIRnor6.0
Rnor_5.01671,334,736 - 71,335,277UniSTSRnor5.0
RGSC_v3.41671,304,131 - 71,304,673UniSTSRGSC3.4
Celera1664,802,048 - 64,802,589UniSTS
RH 3.4 Map16631.6UniSTS
Cytogenetic Map16q12.4UniSTS
RH140240  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,894,491 - 66,894,677 (+)MAPPERmRatBN7.2
Rnor_6.01671,679,885 - 71,680,070NCBIRnor6.0
Rnor_5.01671,334,322 - 71,334,507UniSTSRnor5.0
RGSC_v3.41671,303,717 - 71,303,902UniSTSRGSC3.4
Celera1664,801,634 - 64,801,819UniSTS
RH 3.4 Map16623.2UniSTS
Cytogenetic Map16q12.4UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 38 22 19 22 2 2 74 35 41 11 2
Low 19 19 19 6 9 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE113007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ193303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ211635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB324718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ736163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000035347   ⟹   ENSRNOP00000030626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,845,041 - 66,895,733 (+)Ensembl
Rnor_6.0 Ensembl1671,629,525 - 71,681,126 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088462   ⟹   ENSRNOP00000075027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,845,041 - 66,895,733 (+)Ensembl
Rnor_6.0 Ensembl1671,629,659 - 71,676,254 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097760   ⟹   ENSRNOP00000078214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,844,813 - 66,895,733 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106912   ⟹   ENSRNOP00000092100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,812,295 - 66,895,733 (+)Ensembl
RefSeq Acc Id: NM_001004107   ⟹   NP_001004107
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,547,704 - 73,598,392 (+)NCBI
mRatBN7.21666,845,041 - 66,895,733 (+)NCBI
Rnor_6.01671,629,525 - 71,681,126 (+)NCBI
Rnor_5.01671,252,762 - 71,335,563 (+)NCBI
RGSC_v3.41671,241,785 - 71,304,959 (+)RGD
Celera1664,752,412 - 64,802,875 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253318   ⟹   XP_006253380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,543,160 - 73,598,395 (+)NCBI
mRatBN7.21666,840,914 - 66,895,736 (+)NCBI
Rnor_6.01671,629,749 - 71,681,126 (+)NCBI
Rnor_5.01671,252,762 - 71,335,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600145   ⟹   XP_017455634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,543,160 - 73,598,395 (+)NCBI
mRatBN7.21666,840,885 - 66,895,736 (+)NCBI
Rnor_6.01671,629,749 - 71,681,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600146   ⟹   XP_017455635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,515,040 - 73,598,395 (+)NCBI
mRatBN7.21666,812,376 - 66,895,736 (+)NCBI
Rnor_6.01671,596,970 - 71,681,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094559   ⟹   XP_038950487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,515,041 - 73,598,395 (+)NCBI
mRatBN7.21666,812,378 - 66,895,736 (+)NCBI
RefSeq Acc Id: XM_039094561   ⟹   XP_038950489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,515,016 - 73,598,395 (+)NCBI
mRatBN7.21666,812,232 - 66,895,736 (+)NCBI
RefSeq Acc Id: XM_063275443   ⟹   XP_063131513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,543,161 - 73,598,395 (+)NCBI
RefSeq Acc Id: XM_063275444   ⟹   XP_063131514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,515,122 - 73,598,395 (+)NCBI
RefSeq Acc Id: XM_063275445   ⟹   XP_063131515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,515,059 - 73,598,395 (+)NCBI
RefSeq Acc Id: XM_063275446   ⟹   XP_063131516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,515,029 - 73,578,520 (+)NCBI
RefSeq Acc Id: NP_001004107   ⟸   NM_001004107
- UniProtKB: D4A927 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253380   ⟸   XM_006253318
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y233 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455635   ⟸   XM_017600146
- Peptide Label: isoform X1
- UniProtKB: D4A927 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455634   ⟸   XM_017600145
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K9K2 (UniProtKB/TrEMBL),   D4A927 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000030626   ⟸   ENSRNOT00000035347
RefSeq Acc Id: ENSRNOP00000075027   ⟸   ENSRNOT00000088462
RefSeq Acc Id: XP_038950489   ⟸   XM_039094561
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038950487   ⟸   XM_039094559
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AHG9 (UniProtKB/TrEMBL),   D4A927 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078214   ⟸   ENSRNOT00000097760
RefSeq Acc Id: ENSRNOP00000092100   ⟸   ENSRNOT00000106912
RefSeq Acc Id: XP_063131516   ⟸   XM_063275446
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063131515   ⟸   XM_063275445
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063131514   ⟸   XM_063275444
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063131513   ⟸   XM_063275443
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K9K2 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K9K2-F1-model_v2 AlphaFold A0A0G2K9K2 1-784 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700172
Promoter ID:EPDNEW_R10696
Type:initiation region
Name:Tacc1_1
Description:transforming, acidic coiled-coil containing protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01671,629,516 - 71,629,576EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303120 AgrOrtholog
BioCyc Gene G2FUF-10955 BioCyc
Ensembl Genes ENSRNOG00000016423 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035347 ENTREZGENE
  ENSRNOT00000035347.6 UniProtKB/TrEMBL
  ENSRNOT00000088462.2 UniProtKB/TrEMBL
  ENSRNOT00000097760.1 UniProtKB/TrEMBL
  ENSRNOT00000106912.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro Alp7/TACC UniProtKB/TrEMBL
  TACC UniProtKB/TrEMBL
NCBI Gene 306562 ENTREZGENE
PANTHER PTHR13924 UniProtKB/TrEMBL
  TRANSFORMING ACIDIC COILED-COIL-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam TACC UniProtKB/TrEMBL
PhenoGen Tacc1 PhenoGen
RatGTEx ENSRNOG00000016423 RatGTEx
UniProt A0A0G2K9K2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y233 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHG9 ENTREZGENE, UniProtKB/TrEMBL
  A6IW20_RAT UniProtKB/TrEMBL
  A6IW21_RAT UniProtKB/TrEMBL
  D4A927 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Tacc1  transforming, acidic coiled-coil containing protein 1  Tacc1a  transforming, acidic coiled-coil containing protein 1a  Symbol and Name updated 1299863 APPROVED
2005-02-14 Tacc1a  transforming, acidic coiled-coil containing protein 1a      Symbol and Name status set to provisional 70820 PROVISIONAL