Zbtb1 (zinc finger and BTB domain containing 1)

Gene: Zbtb1 (zinc finger and BTB domain containing 1) Rattus norvegicus

Analyze

Symbol:

Zbtb1

Name:

zinc finger and BTB domain containing 1

RGD ID:

1303095

Description:

Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; K63-linked polyubiquitin modification-dependent protein binding activity; and protein dimerization activity. Predicted to be involved in several processes, including nucleobase-containing compound biosynthetic process; positive regulation of lymphocyte differentiation; and regulation of gene expression. Predicted to act upstream of or within B cell differentiation and T cell differentiation in thymus. Predicted to be located in nuclear body and nuclear membrane. Predicted to be active in nucleoplasm. Orthologous to human ZBTB1 (zinc finger and BTB domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

zinc finger and BTB domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZBTB1 (zinc finger and BTB domain containing 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI
Mus musculus (house mouse):	Zbtb1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zbtb1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZBTB1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZBTB1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zbtb1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZBTB1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZBTB1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zbtb1 (zinc finger and BTB domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zbtb1 (zinc finger and BTB domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZBTB1 (zinc finger and BTB domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zbtb1 (zinc finger and BTB domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Xenopus tropicalis (tropical clawed frog):	tmem35b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zbtb1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	100,832,506 - 100,864,019 (+)	NCBI		GRCr8
mRatBN7.2	6	95,096,838 - 95,125,811 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	95,096,387 - 95,118,996 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	95,502,842 - 95,506,108 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	95,801,356 - 95,804,622 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	95,230,169 - 95,233,435 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	99,401,775 - 99,425,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	99,402,360 - 99,424,019 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	108,813,081 - 108,936,519 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	98,981,038 - 98,984,303 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	98,984,493 - 98,987,759 (+)	NCBI
Celera	6	93,534,115 - 93,537,380 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-deoxy-D-glucose (ISO)

3,4-dichloroaniline (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

clorgyline (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

coumestrol (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

diuron (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

fipronil (EXP)

formaldehyde (ISO)

FR900359 (ISO)

geraniol (ISO)

indometacin (ISO)

leflunomide (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

N-methyl-4-phenylpyridinium (EXP)

panobinostat (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quercetin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium dichromate (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vanadyl sulfate (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (ISO)

cellular response to UV (ISO)

chromatin remodeling (ISO)

DNA damage response (ISO)

DNA repair (ISO)

mRNA transcription by RNA polymerase II (ISO)

negative regulation of transcription by RNA polymerase II (IBA,ISO)

positive regulation of natural killer cell differentiation (ISO)

positive regulation of pro-T cell differentiation (ISO)

positive regulation of T cell differentiation (ISO)

positive regulation of T cell mediated immunity (ISO)

protein homooligomerization (ISO)

regulation of cytokine production (IBA)

regulation of immune system process (IBA)

T cell differentiation in thymus (ISO)

thymus development (ISO)

translesion synthesis (ISO)

Cellular Component

nuclear body (ISO)

nuclear membrane (IEA,ISO)

nucleoplasm (IBA,ISO)

nucleus (ISO)

Molecular Function

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA)

K63-linked polyubiquitin modification-dependent protein binding (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:20797634	PMID:21706167	PMID:22201126	PMID:22753936	PMID:24657165

Genomics

Comparative Map Data

Zbtb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	100,832,506 - 100,864,019 (+)	NCBI		GRCr8
mRatBN7.2	6	95,096,838 - 95,125,811 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	95,096,387 - 95,118,996 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	95,502,842 - 95,506,108 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	95,801,356 - 95,804,622 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	95,230,169 - 95,233,435 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	99,401,775 - 99,425,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	99,402,360 - 99,424,019 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	108,813,081 - 108,936,519 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	98,981,038 - 98,984,303 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	98,984,493 - 98,987,759 (+)	NCBI
Celera	6	93,534,115 - 93,537,380 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

ZBTB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	64,503,716 - 64,533,693 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	64,503,712 - 64,533,690 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	64,971,488 - 65,000,411 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	64,041,174 - 64,070,161 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	64,041,173 - 64,070,161	NCBI
Celera	14	45,029,022 - 45,058,137 (+)	NCBI		Celera
Cytogenetic Map	14	q23.3	NCBI
HuRef	14	45,143,919 - 45,173,044 (+)	NCBI		HuRef
CHM1_1	14	64,910,965 - 64,940,072 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	58,711,422 - 58,741,460 (+)	NCBI		T2T-CHM13v2.0

Zbtb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	76,416,825 - 76,443,729 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	76,417,040 - 76,443,724 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	76,370,051 - 76,396,955 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	76,370,266 - 76,396,950 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	77,471,253 - 77,489,734 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	77,289,106 - 77,307,290 (+)	NCBI		MGSCv36	mm8
Celera	12	77,461,603 - 77,479,773 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	33.73	NCBI

Zbtb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	5,355,344 - 5,376,240 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	5,353,355 - 5,376,240 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	65,615,544 - 65,645,388 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	64,832,059 - 64,864,228 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	45,085,146 - 45,114,965 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	63,337,806 - 63,366,653 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	63,354,458 - 63,359,403 (+)	Ensembl	panpan1.1		panPan2

ZBTB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	38,933,721 - 38,959,306 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	38,933,805 - 38,959,306 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	38,625,165 - 38,650,702 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	39,155,081 - 39,180,556 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	39,154,947 - 39,180,556 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	38,776,929 - 38,802,424 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	38,848,165 - 38,873,674 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	39,208,582 - 39,234,081 (+)	NCBI		UU_Cfam_GSD_1.0

Zbtb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	65,954,381 - 65,979,097 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936495	8,212,136 - 8,238,876 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	88,576,008 - 88,602,724 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	88,575,563 - 88,602,726 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	94,956,867 - 94,981,373 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	41,712,721 - 41,738,853 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	41,712,114 - 41,740,654 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	29,889,458 - 29,915,735 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	36,479,670 - 36,509,655 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zbtb1
70 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	369
Count of miRNA genes:	179
Interacting mature miRNAs:	205
Transcripts:	ENSRNOT00000050865
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	45790088	104200226	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	57730540	104085867	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	57730540	104085867	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	58632962	103632962	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	61747639	106747639	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	67262953	112262953	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	71201409	116201409	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	72202632	115200186	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	72202632	117202632	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	73463459	109394713	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	82523650	110548006	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	83190345	106747639	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	89762877	106752806	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat

Markers in Region

RH139658

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	95,158,763 - 95,158,949 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	99,463,805 - 99,463,990	NCBI	Rnor6.0
Rnor_5.0	6	108,873,728 - 108,873,913	UniSTS	Rnor5.0
RGSC_v3.4	6	99,028,190 - 99,028,375	UniSTS	RGSC3.4
Celera	6	93,581,696 - 93,581,881	UniSTS
RH 3.4 Map	6	675.5	UniSTS
Cytogenetic Map	6	q24	UniSTS

AU047738

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	95,175,918 - 95,176,082 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	99,480,956 - 99,481,119	NCBI	Rnor6.0
Rnor_6.0	6	99,539,309 - 99,539,472	NCBI	Rnor6.0
Rnor_5.0	6	108,945,338 - 108,945,501	UniSTS	Rnor5.0
Rnor_5.0	6	108,890,878 - 108,891,041	UniSTS	Rnor5.0
RGSC_v3.4	6	99,045,341 - 99,045,504	UniSTS	RGSC3.4
Celera	6	93,598,856 - 93,599,019	UniSTS
Cytogenetic Map	6	q24	UniSTS

Zbtb1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	95,112,219 - 95,112,275 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	99,526,943 - 99,526,998	NCBI	Rnor6.0
Rnor_6.0	6	99,417,229 - 99,417,284	NCBI	Rnor6.0
Rnor_5.0	6	108,936,051 - 108,936,106	UniSTS	Rnor5.0
RGSC_v3.4	6	98,983,835 - 98,983,890	UniSTS	RGSC3.4
Celera	6	93,536,912 - 93,536,967	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	22	6	19	6	1	1	72	32	35	11	1
Low	1	17	35	35		35	7	10	2	3	6		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC103479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY693992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000078498 ⟹ ENSRNOP00000072596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	95,096,387 - 95,118,996 (+)	Ensembl
Rnor_6.0 Ensembl	6	99,402,360 - 99,424,019 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110356 ⟹ ENSRNOP00000097406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	95,097,399 - 95,113,410 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117277 ⟹ ENSRNOP00000080670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	95,097,591 - 95,111,965 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119538 ⟹ ENSRNOP00000081356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	95,096,835 - 95,112,652 (+)	Ensembl

RefSeq Acc Id:

NM_001004444 ⟹ NP_001004444

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,845,090 - 100,848,355 (+)	NCBI
mRatBN7.2	6	95,109,423 - 95,112,688 (+)	NCBI
Rnor_6.0	6	99,414,432 - 99,417,697 (+)	NCBI
Rnor_5.0	6	108,813,081 - 108,936,519 (+)	NCBI
RGSC_v3.4	6	98,981,038 - 98,984,303 (+)	RGD
Celera	6	93,534,115 - 93,537,380 (+)	RGD

Sequence:

show sequence

GCAGGAGATGGCCAAGCCCAGCCACAGCAGCTACGTCCTGCAGCAGCTAAACAACCAGAGAGAG
TGGGGCTTTCTGTGCGACTGCTGCATCGCCATTGACGACACTTACTTCCAAGCACACAAGGCCG
TGCTAGCTGCCTGTAGCTCCTACTTCAGGATGTTCTTCATGAACCATCAGCATAGCACTGCCCA
GCTGAACCTCAGCAACATGAAGATCAGCGCCGAGTGCTTCGATCTCATTTTGCAGTTCATGTAT
TTAGGGAAGATTCTGACCGCTCCTTCCAGTTTTGAGCAGTTCAAAGTGGCTATGAACTACCTCC
AGCTCTACAATGTTCCTGACTGCTTAGAAGATATACAGGACTCAGACTGTTCCAGCTCGAAGTG
CTCGTCTTCCGCCTCCAGCAAACACAACAGCAAGATGATCTTTGGGGTGAGGATGTATGAAGAC
ACAGTGGCTAGAAACGGCAGTGAAGCCAACCGGTGGAGTGCGGAGCCCAGTTCAACGGTGAATA
CGCCACATAACAGAGAGCCTGAGGAGGAGTCTTTACCGTTGGCCAACTTTCCTGAGCCACTGTT
TGACGTGTGTAAAAAAAGTTCCGTGTCCAAGTTATCTACTCCAAAAGAACGTGTGTCGCGACGC
TTTGGACGGAGTTTTACCTGTGACAGTTGTGGGTTTGGCTTTAGCTGTGAAAAGCTGCTGGACG
AACACGTGCTGACCTGCACCAACAGGCACTCCTACCAGAGCACGGCGAGAGCCTACCACCGAGT
GGTGGATGCTAGAGATGGGAAAGACAGTGCCATCAAAGCTGAACTCGGTGACAAGGGCTCTCCT
ACAGCGTTTTCTGCACACACAGACAAATACAGAGAAGACGCCAGCCAGGCGCCCGATGACTCAG
CCTCGCCCACTGGGAGCAGAAAAAGCACTGTGGAGTCCGGCACAGCTGGTGAAGAGAAGAGCAG
AGCTGCGGAGACAAAAAGAGTTGTCATCAAGATGGAGCCAGAGGACGTCCCTGCAGACGACATG
AAGGACTTCACCATCGTCAAGGTCACCGAGAAAGACTGCAACGAGTCCACCGACAACGATGAGC
TAGAGGACGAGCCCGAGGAGCCGTTCTACAGATACTACGTCGAGGAAGATGTTGGCATTAAAAA
AAGTGGTAGGAAAACCCTAAAACCTCGGATGTCCGTCGGCGTGGATGAAAGGGGTGGTTTGGAG
AACATGAGACCCCCAAACAACAGCAGCCCCAGACAGGAGGACGCCGAGAATGCGTCTTGTGAGT
TGTGTGGGCTCACGATAACGGAGGAGGACCTGTCCTCTCATTACTTAGCCAAGCACATTGAAAA
TATCTGCGCATGTGGTAAATGTGGGCAGATACTTGTCAAGGGCAGACAGCTTCAGGAACACGCT
CAGAGGTGTGGCGAACCTCAGGACCTGACGATGAACGGGCTGGGGAACACTGACGAGAAGATGG
ACATGGAAGAGAACCCAGATGAGCAGTCTGAGATAAGAGACATGTTTGTTGAGATGCTGGATGA
TTTCAGAGACAATCATTACCAAATAAACAGTATCCAGAAAAAACAGTTATTTAAACATTCTGCC
TGTCCTTTTCGATGTCCTAATTGTGGCCAGCGTTTTGAAACTGAAAATCTAGTGGTGGAGCATA
TGTCTAGCTGCCTAGACCAAGACATGTTTAAGGGCGCCGTCATGGAGGAGAATGAACGAGATCA
CAGACGGAAACATTTCTGTAACCTGTGTGGAAAAGGCTTCTATCAGCGCTGTCATTTGAGAGAG
CACTATACTGTTCATACTAAAGAAAAGCAGTTTGTTTGTCAGACATGTGGGAAGCAGTTTTTAA
GAGAGCGCCAGTTGCGTCTGCACAATGATATGCACAAAGGCATGGCCAGGTATGTCTGTTCCAT
TTGTGATCAAGGAAACTTCCGAAAACATGACCATGTACGGCATATGATCTCGCATTTGTCTGGT
GGTGAGACTATATGCCAGGTCTGCTTTCAGATATTCCCAAATAATGAACAACTGGAGCAACACA
TGGATGTCCATCTGTATACGTGTGGAATATGTGGAGCAAAGTTTAATTTGAGGAAGGATATGAG
ATCACATTATAATGCCAAGCATTTGAAAAGAACCTGATGGGTTTCTCCTGTACACATGTTTAGT
TGCTAGGCAGAACACCAAAGCAAAGAGGAGATGAGCTATTTAGAACTGATTTTATAACAAGTGT
TGAGGGAATCTTCAAGGCCCTTTTACTTTGAACGTTTTTGTTTAGGACCTTAAGTATATTTTAG
GCATTAATGTTTATCATTTTTGTTGTTTTTGAGAGCATTCTTTGTTCCTAGTTTCTTAACTACC
ATTAAAATTACTTTTCGATGTAGACTGTTAAGTGGCTGTTATCCCTTCAATGACTATTAAAACT
AGTTTTTTGGGTTTTTTCTTTTTAATTTTTTTTTGGGTTTTTTTTGTTTTGTTTTGTTTTTTTA
ACCAATAAGGTAAAAACTTTGCTATTTCTATGTACTTTCATTTTAAGGTCATCCTATGAAATTT
TAAACCCAAGATTATTTACCATTCCTGCTTAAATTTTTATAGAATTTTAAAATAATTATTTAAA
ACTATTCTATTTGTTTTTAACTTTTTGTTTTTTGCTTTTTGGGTTTTTGGGGGTTTTTTTGTTT
GTTTGTTTGTTTGTTTGTTTGGCGGGGGGCTTTTTGTCAGTTGTATAGTGGGGTGGCTACTATT
CTCCCTTATAAATGAAATCTATATTCTTAAATTGACAAACTTATTAGGCAAGTGAGGTGCACTG
AATCTAACCTTTAAGGTTGACATGGGCTCAATCTTGGCCTGAGATTGATGGACCTAAGGAAACT
CCTATAAACGAACATTTCCTATAATTGATAAAATGTTATCATTTAATAATCACATTTAAAACTT
ATATTAAGTGTAAATCCCAATGACTTTGCCTCACTTGAGAAATTAGTGGGGATAAGCCATTTTG
TTTTGTGATAATGAATTTAACTATGATAGTTAATTAAAAAAGACATCTTGTATTCATTAAAATA
TTTTAATTTAAAAATATTCTGATTTCTAAAGTGTGTTAGTTTATCAATTATTTTGTTTATAAAT
AGACTTTAATAGCTCTTTAGGAATATGACATCTAAAGAAAAATGATTTTTCATTTTTAAAATTA
CTTTGGAACTGAAATTTGAAAAAGCTGCCATGTATATTGATAAATCTAATAAAATAAAGAAATC
AA

hide sequence

RefSeq Acc Id:

XM_006240241 ⟹ XP_006240303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,832,506 - 100,848,362 (+)	NCBI
mRatBN7.2	6	95,096,838 - 95,114,753 (+)	NCBI
Rnor_6.0	6	99,401,775 - 99,420,655 (+)	NCBI
Rnor_5.0	6	108,813,081 - 108,936,519 (+)	NCBI

Sequence:

show sequence

CGGTGCGGCAGGCGCGGCTGTGCGGCAGCGGAAGTCCTTTGTTGCAGCGCAGTCCCTGGCAGAG
CCGGAGTGTCTCGGCGCAGCCCAGCGGAGCGCCGCGCGCCGTCAACTGCAGCCCGCGGCCCCTC
GCCTCCGCCTGCCTTCCCCGCGGCCCCGCTGCCCTAAACTCCATAAAACCTCCGCAGCCGCGCG
TCCCACCGCGCCCGGCTCACCGGCAGGAGATGGCCAAGCCCAGCCACAGCAGCTACGTCCTGCA
GCAGCTAAACAACCAGAGAGAGTGGGGCTTTCTGTGCGACTGCTGCATCGCCATTGACGACACT
TACTTCCAAGCACACAAGGCCGTGCTAGCTGCCTGTAGCTCCTACTTCAGGATGTTCTTCATGA
ACCATCAGCATAGCACTGCCCAGCTGAACCTCAGCAACATGAAGATCAGCGCCGAGTGCTTCGA
TCTCATTTTGCAGTTCATGTATTTAGGGAAGATTCTGACCGCTCCTTCCAGTTTTGAGCAGTTC
AAAGTGGCTATGAACTACCTCCAGCTCTACAATGTTCCTGACTGCTTAGAAGATATACAGGACT
CAGACTGTTCCAGCTCGAAGTGCTCGTCTTCCGCCTCCAGCAAACACAACAGCAAGATGATCTT
TGGGGTGAGGATGTATGAAGACACAGTGGCTAGAAACGGCAGTGAAGCCAACCGGTGGAGTGCG
GAGCCCAGTTCAACGGTGAATACGCCACATAACAGAGAGCCTGAGGAGGAGTCTTTACCGTTGG
CCAACTTTCCTGAGCCACTGTTTGACGTGTGTAAAAAAAGTTCCGTGTCCAAGTTATCTACTCC
AAAAGAACGTGTGTCGCGACGCTTTGGACGGAGTTTTACCTGTGACAGTTGTGGGTTTGGCTTT
AGCTGTGAAAAGCTGCTGGACGAACACGTGCTGACCTGCACCAACAGGCACTCCTACCAGAGCA
CGGCGAGAGCCTACCACCGAGTGGTGGATGCTAGAGATGGGAAAGACAGTGCCATCAAAGCTGA
ACTCGGTGACAAGGGCTCTCCTACAGCGTTTTCTGCACACACAGACAAATACAGAGAAGACGCC
AGCCAGGCGCCCGATGACTCAGCCTCGCCCACTGGGAGCAGAAAAAGCACTGTGGAGTCCGGCA
CAGCTGGTGAAGAGAAGAGCAGAGCTGCGGAGACAAAAAGAGTTGTCATCAAGATGGAGCCAGA
GGACGTCCCTGCAGACGACATGAAGGACTTCACCATCGTCAAGGTCACCGAGAAAGACTGCAAC
GAGTCCACCGACAACGATGAGCTAGAGGACGAGCCCGAGGAGCCGTTCTACAGATACTACGTCG
AGGAAGATGTTGGCATTAAAAAAAGTGGTAGGAAAACCCTAAAACCTCGGATGTCCGTCGGCGT
GGATGAAAGGGGTGGTTTGGAGAACATGAGACCCCCAAACAACAGCAGCCCCAGACAGGAGGAC
GCCGAGAATGCGTCTTGTGAGTTGTGTGGGCTCACGATAACGGAGGAGGACCTGTCCTCTCATT
ACTTAGCCAAGCACATTGAAAATATCTGCGCATGTGGTAAATGTGGGCAGATACTTGTCAAGGG
CAGACAGCTTCAGGAACACGCTCAGAGGTGTGGCGAACCTCAGGACCTGACGATGAACGGGCTG
GGGAACACTGACGAGAAGATGGACATGGAAGAGAACCCAGATGAGCAGTCTGAGATAAGAGACA
TGTTTGTTGAGATGCTGGATGATTTCAGAGACAATCATTACCAAATAAACAGTATCCAGAAAAA
ACAGTTATTTAAACATTCTGCCTGTCCTTTTCGATGTCCTAATTGTGGCCAGCGTTTTGAAACT
GAAAATCTAGTGGTGGAGCATATGTCTAGCTGCCTAGACCAAGACATGTTTAAGGGCGCCGTCA
TGGAGGAGAATGAACGAGATCACAGACGGAAACATTTCTGTAACCTGTGTGGAAAAGGCTTCTA
TCAGCGCTGTCATTTGAGAGAGCACTATACTGTTCATACTAAAGAAAAGCAGTTTGTTTGTCAG
ACATGTGGGAAGCAGTTTTTAAGAGAGCGCCAGTTGCGTCTGCACAATGATATGCACAAAGGCA
TGGCCAGGTATGTCTGTTCCATTTGTGATCAAGGAAACTTCCGAAAACATGACCATGTACGGCA
TATGATCTCGCATTTGTCTGGTGGTGAGACTATATGCCAGGTCTGCTTTCAGATATTCCCAAAT
AATGAACAACTGGAGCAACACATGGATGTCCATCTGTATACGTGTGGAATATGTGGAGCAAAGT
TTAATTTGAGGAAGGATATGAGATCACATTATAATGCCAAGCATTTGAAAAGAACCTGATGGGT
TTCTCCTGTACACATGTTTAGTTGCTAGGCAGAACACCAAAGCAAAGAGGAGATGAGCTATTTA
GAACTGATTTTATAACAAGTGTTGAGGGAATCTTCAAGGCCCTTTTACTTTGAACGTTTTTGTT
TAGGACCTTAAGTATATTTTAGGCATTAATGTTTATCATTTTTGTTGTTTTTGAGAGCATTCTT
TGTTCCTAGTTTCTTAACTACCATTAAAATTACTTTTCGATGTAGACTGTTAAGTGGCTGTTAT
CCCTTCAATGACTATTAAAACTAGTTTTTTGGGTTTTTTCTTTTTAATTTTTTTTTGGGTTTTT
TTTGTTTTGTTTTGTTTTTTTAACCAATAAGGTAAAAACTTTGCTATTTCTATGTACTTTCATT
TTAAGGTCATCCTATGAAATTTTAAACCCAAGATTATTTACCATTCCTGCTTAAATTTTTATAG
AATTTTAAAATAATTATTTAAAACTATTCTATTTGTTTTTAACTTTTTGTTTTTTGCTTTTTGG
GTTTTTGGGGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGGCGGGGGGCTTTTTGTCAGTT
GTATAGTGGGGTGGCTACTATTCTCCCTTATAAATGAAATCTATATTCTTAAATTGACAAACTT
ATTAGGCAAGTGAGGTGCACTGAATCTAACCTTTAAGGTTGACATGGGCTCAATCTTGGCCTGA
GATTGATGGACCTAAGGAAACTCCTATAAACGAACATTTCCTATAATTGATAAAATGTTATCAT
TTAATAATCACATTTAAAACTTATATTAAGTGTAAATCCCAATGACTTTGCCTCACTTGAGAAA
TTAGTGGGGATAAGCCATTTTGTTTTGTGATAATGAATTTAACTATGATAGTTAATTAAAAAAG
ACATCTTGTATTCATTAAAATATTTTAATTTAAAAATATTCTGATTTCTAAAGTGTGTTAGTTT
ATCAATTATTTTGTTTATAAATAGACTTTAATAGCTCTTTAGGAATATGACATCTAAAGAAAAA
TGATTTTTCATTTTTAAAATTACTTTGGAACTGAAATTTGAAAAAGCTGCCATGTATATTGATA
AATCTAATAAAATAAAGAAATCAACTATAAATCTGGTTGTTCTATAAAAGTAGAGTGCACAAAA
GTGTGTTGTGTTTTACACTAAGATTTGGAGAAAATGTGTTGTGGCAAATTACAGTTACTATGCT
TTCTATATCATTTTCTGTAAAAGATGCAAGATTTGAGGACTATAAAGTAATCACAGCATACAAA
TGGAAACAGCTTCTACCTTTCAGGTAACGCAGTCACTGACAGGGTCTATCAGTTATGTGTGAAC
TAAAACACTGGCAAAATAACCCACCAATAAACACAGCTACCGAATAGAATGCCTTTTAATGTGA
ATTACTTTGAACACCCTTCTTAATACTGAAAAGGGTTTTAGTTAACATCTATATTTAAAAGTAT
ACTGAGTGTGGACAGCAGTTTAAAAGCATTGCTCTTTTTTGCTCTTTGCTCTCCTGATTTTTAA
GATGTGCAAATCACATTTTCACCTGCCATTCGCATAAAAGCACAGGTTGCCAAGAGAGTGGAGA
GACGGGTTAGCTGGTGCGCAGCGAGCTGAAAGTCCAGGGTGAGCGCAGAGACCTGTGGCCGAGT
GCTGAATTGCTAGTGAGGACAAATGGGATGCACCGGGCCAGGACAGAGTTAAACATGACTGTGA
GGAGAAGCACAATGCACAAATGAGATCTTGAGCTGGTTTTGTTTTGTTTTTTTGTCCCGTGCCC
CCCAGGTACATAGTTAACAAAAAAACTGGAAAAGTTCATTTTCAAATGTTCTGGATGTAATAGT
TTAACAAATACTTAAAACTGAAGATGAAATATGAGGTGTATGCTTAGATTACTATTAGGAGTCT
GATAAATGCTCTCTAACAAAGCCAGACATCAGAGAGTAGTGTGAAGGGAGAGGAGACAAACTGA
AATGTTCAAATTATACAGTGTCTGAGGGGACCTGATTTTCTTGTGGTCACTTTTCCTGTCAGAA
TTTCTGTTGAAAAGATTTTCCCACAGTTAAAGTCAAAGGGGGGAATCCTCCTTAATTTAGTGTT
TTAGTGTATGCTATCAATTAACAAATTAGCAAGCAAATGTATAAACATAATCTAGCATTACCCA
GCTACGACACTTGCTTCAAAGAGGTAGGTTTGACGATGAGATCTGTTTCGTTAACTACATAGTA
GACGTGGTTTGGGGGAATTAAGCCACAGGGTAGCACAGGTTTCTCCAAGCGGCATGTCCAATTT
TCCTTAACAAGACAGGGCTCAGGCAAAGTTACTTAACTTGTAAAATTAAGGTGAATGAAAAGAG
CCATTTCCTCTCCTCCCATCTCTCTCACCTTCCTTCCTGGGAGGGCCCAGAAAAGCCCCACCTC
CTGTGCATGCTGCCTCTCCTCTTGGGTTGTCAAAGCCGGGATGGAATTGGCTGCTGCTTCTGAC
TTTGATGCTTCATACACTTTGAGGATCCAGATTTTCAGATCTGGAGAGGAAAAGAGGAACCAGA
GAAGCATAGTATCTTTTCCCACTCTTCATGATGCTTTTCATTTGAAGGCCCATTTCTAGAACTT
CAATAAACAACGAACAGTCTAATTGGACCTTTCTGCCTGGTGGTCCAGATCGAACCCAGACCTC
CAGCATGCTAGACGGCTCTTCTCTCCTGAGCTATGTGCCGGAGTTCCCCTTTTGGAAACGACAA
AAACCCTAGAGAAATAATCTGTCTCTAACAAGGTTGACACTACAACGTGGATAGATAATGTTTT
TGTAAAGACTAGACCTCAGCGTCTTCCCCTTTCCCTTCTGTCTCCTAATCCGGGATCCTGCTGA
TCCTGCCTTAGCGTCCCGTGCTCTGTAGAGATGTAAGCTGACACATTTAGGTTCTTCGTTTTGC
GAGGCAGGGTCTTGCTTTATAGCTCAAGAGAATTGGGAATGGAAGTCTCCATTCTTTTAGCCCT
CCTCCAGGAGAGCTGAGATTACAGTAATGCAGCGCCGTGCCCAGCTAATTTCACATATTTTTAA
AGTGAGAATTTTCAGAGAAATGACCCATGTGGGTAACATGGTCTCTAGCAAAAGTTTAATTCAC
TTTTAAACTTTTAACTCTGAGCAAAAAAAAAAAAAAAAAAATTAATTAGAAGAAAGGATTCCAG
AGGGTACTGGTAAAAGATTTAAACTGAGTGTGGTAGTTTTATACCTATAACCCCAGCGAGCAGA
GAGGCTAGGCTAGGTTCATGGTTACCACTTGAGTTCAGGGCTATATTGGTCTTTACGTGGTAAG
ATCGTCTCAGAAAAGTTAAAGACATTAATGTATACAGCTTGTTAAGACAGGACAGTAATGGGCT
TGCAAAAATATGAACATAGGCCAGGTGTGGTAGTGTACCCCTTTAATTCCAGCACTCAGGAAGC
AGCCAAGGCTGCACAGAGAGACATTCTCAGAAAACCGAATACAAAACAAAAACAAAGTGTGAAT
TTGAGCATACACCAATATATAGAAGTTATGGGAGGAGGCATAGGCTTTCAAGACATTTGACTAG
GCTGATCCAGCTATAACTGAAGTACCAAGCTCCCGGTGGTTCTGAGCATGCCCAGGGTGTGCCC
CAAAATGCCTGGTGGTAGTGGATGATGGTAATTTTCTCACTGGTTAAATCACTTTACATTTTAC
CTCTGAGAAATCTCCCTAAGAACCAGTGTAATAGTTTAGTATTGGAAAGTAAAACCTGTCATTA
ACACAAGACAAATCAGTACCAAAAGAAAAGCACCTGAACGTGTCTATGTACATATGGCTGAAAA
GTTTAAAGTTGGACATACCTGATTTGAACTGGGTTTATCCTAACTTGAGAGCTGGGTATGATGT
CACAAACTTATAAACACAGCATTTGGGAAGTTAAACCAGGAGCATTAACAGCTCAAGGCCAGCC
TGGAGTATGTGATAACCTGTCACAAGTTGTTTGAAAGAAAGAAAAGAAAAGACATCTTTGAGAA
CAGCCAGAGCTATACAGAGAAACTGTCTCAAAACAACA

hide sequence

RefSeq Acc Id:

XM_006240243 ⟹ XP_006240305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,833,007 - 100,848,362 (+)	NCBI
mRatBN7.2	6	95,097,339 - 95,114,753 (+)	NCBI
Rnor_6.0	6	99,402,276 - 99,420,655 (+)	NCBI
Rnor_5.0	6	108,813,081 - 108,936,519 (+)	NCBI

Sequence:

show sequence

GCGGGAGGCCGCGCTTGATTGACGGGCCCAGAGCGCGCTTCACTAACTTCCAGCTGCGGCTGGG
CGGCCGGTGGGAGGGGAGCGTCCCGGAGCCGGAGGCCGCAGACTTGGGCGCGCTCCGAGGGAGG
AGGCGGCTGGGCCGCGCGGATTCCTGCTTCGCTCTTTCCCACCCCCGCTCCTCAGCACACACGC
TTTTTGTTCGGGTCCAAAGTGGCTCACCGGCAGGAGATGGCCAAGCCCAGCCACAGCAGCTACG
TCCTGCAGCAGCTAAACAACCAGAGAGAGTGGGGCTTTCTGTGCGACTGCTGCATCGCCATTGA
CGACACTTACTTCCAAGCACACAAGGCCGTGCTAGCTGCCTGTAGCTCCTACTTCAGGATGTTC
TTCATGAACCATCAGCATAGCACTGCCCAGCTGAACCTCAGCAACATGAAGATCAGCGCCGAGT
GCTTCGATCTCATTTTGCAGTTCATGTATTTAGGGAAGATTCTGACCGCTCCTTCCAGTTTTGA
GCAGTTCAAAGTGGCTATGAACTACCTCCAGCTCTACAATGTTCCTGACTGCTTAGAAGATATA
CAGGACTCAGACTGTTCCAGCTCGAAGTGCTCGTCTTCCGCCTCCAGCAAACACAACAGCAAGA
TGATCTTTGGGGTGAGGATGTATGAAGACACAGTGGCTAGAAACGGCAGTGAAGCCAACCGGTG
GAGTGCGGAGCCCAGTTCAACGGTGAATACGCCACATAACAGAGAGCCTGAGGAGGAGTCTTTA
CCGTTGGCCAACTTTCCTGAGCCACTGTTTGACGTGTGTAAAAAAAGTTCCGTGTCCAAGTTAT
CTACTCCAAAAGAACGTGTGTCGCGACGCTTTGGACGGAGTTTTACCTGTGACAGTTGTGGGTT
TGGCTTTAGCTGTGAAAAGCTGCTGGACGAACACGTGCTGACCTGCACCAACAGGCACTCCTAC
CAGAGCACGGCGAGAGCCTACCACCGAGTGGTGGATGCTAGAGATGGGAAAGACAGTGCCATCA
AAGCTGAACTCGGTGACAAGGGCTCTCCTACAGCGTTTTCTGCACACACAGACAAATACAGAGA
AGACGCCAGCCAGGCGCCCGATGACTCAGCCTCGCCCACTGGGAGCAGAAAAAGCACTGTGGAG
TCCGGCACAGCTGGTGAAGAGAAGAGCAGAGCTGCGGAGACAAAAAGAGTTGTCATCAAGATGG
AGCCAGAGGACGTCCCTGCAGACGACATGAAGGACTTCACCATCGTCAAGGTCACCGAGAAAGA
CTGCAACGAGTCCACCGACAACGATGAGCTAGAGGACGAGCCCGAGGAGCCGTTCTACAGATAC
TACGTCGAGGAAGATGTTGGCATTAAAAAAAGTGGTAGGAAAACCCTAAAACCTCGGATGTCCG
TCGGCGTGGATGAAAGGGGTGGTTTGGAGAACATGAGACCCCCAAACAACAGCAGCCCCAGACA
GGAGGACGCCGAGAATGCGTCTTGTGAGTTGTGTGGGCTCACGATAACGGAGGAGGACCTGTCC
TCTCATTACTTAGCCAAGCACATTGAAAATATCTGCGCATGTGGTAAATGTGGGCAGATACTTG
TCAAGGGCAGACAGCTTCAGGAACACGCTCAGAGGTGTGGCGAACCTCAGGACCTGACGATGAA
CGGGCTGGGGAACACTGACGAGAAGATGGACATGGAAGAGAACCCAGATGAGCAGTCTGAGATA
AGAGACATGTTTGTTGAGATGCTGGATGATTTCAGAGACAATCATTACCAAATAAACAGTATCC
AGAAAAAACAGTTATTTAAACATTCTGCCTGTCCTTTTCGATGTCCTAATTGTGGCCAGCGTTT
TGAAACTGAAAATCTAGTGGTGGAGCATATGTCTAGCTGCCTAGACCAAGACATGTTTAAGGGC
GCCGTCATGGAGGAGAATGAACGAGATCACAGACGGAAACATTTCTGTAACCTGTGTGGAAAAG
GCTTCTATCAGCGCTGTCATTTGAGAGAGCACTATACTGTTCATACTAAAGAAAAGCAGTTTGT
TTGTCAGACATGTGGGAAGCAGTTTTTAAGAGAGCGCCAGTTGCGTCTGCACAATGATATGCAC
AAAGGCATGGCCAGGTATGTCTGTTCCATTTGTGATCAAGGAAACTTCCGAAAACATGACCATG
TACGGCATATGATCTCGCATTTGTCTGGTGGTGAGACTATATGCCAGGTCTGCTTTCAGATATT
CCCAAATAATGAACAACTGGAGCAACACATGGATGTCCATCTGTATACGTGTGGAATATGTGGA
GCAAAGTTTAATTTGAGGAAGGATATGAGATCACATTATAATGCCAAGCATTTGAAAAGAACCT
GATGGGTTTCTCCTGTACACATGTTTAGTTGCTAGGCAGAACACCAAAGCAAAGAGGAGATGAG
CTATTTAGAACTGATTTTATAACAAGTGTTGAGGGAATCTTCAAGGCCCTTTTACTTTGAACGT
TTTTGTTTAGGACCTTAAGTATATTTTAGGCATTAATGTTTATCATTTTTGTTGTTTTTGAGAG
CATTCTTTGTTCCTAGTTTCTTAACTACCATTAAAATTACTTTTCGATGTAGACTGTTAAGTGG
CTGTTATCCCTTCAATGACTATTAAAACTAGTTTTTTGGGTTTTTTCTTTTTAATTTTTTTTTG
GGTTTTTTTTGTTTTGTTTTGTTTTTTTAACCAATAAGGTAAAAACTTTGCTATTTCTATGTAC
TTTCATTTTAAGGTCATCCTATGAAATTTTAAACCCAAGATTATTTACCATTCCTGCTTAAATT
TTTATAGAATTTTAAAATAATTATTTAAAACTATTCTATTTGTTTTTAACTTTTTGTTTTTTGC
TTTTTGGGTTTTTGGGGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGGCGGGGGGCTTTTT
GTCAGTTGTATAGTGGGGTGGCTACTATTCTCCCTTATAAATGAAATCTATATTCTTAAATTGA
CAAACTTATTAGGCAAGTGAGGTGCACTGAATCTAACCTTTAAGGTTGACATGGGCTCAATCTT
GGCCTGAGATTGATGGACCTAAGGAAACTCCTATAAACGAACATTTCCTATAATTGATAAAATG
TTATCATTTAATAATCACATTTAAAACTTATATTAAGTGTAAATCCCAATGACTTTGCCTCACT
TGAGAAATTAGTGGGGATAAGCCATTTTGTTTTGTGATAATGAATTTAACTATGATAGTTAATT
AAAAAAGACATCTTGTATTCATTAAAATATTTTAATTTAAAAATATTCTGATTTCTAAAGTGTG
TTAGTTTATCAATTATTTTGTTTATAAATAGACTTTAATAGCTCTTTAGGAATATGACATCTAA
AGAAAAATGATTTTTCATTTTTAAAATTACTTTGGAACTGAAATTTGAAAAAGCTGCCATGTAT
ATTGATAAATCTAATAAAATAAAGAAATCAACTATAAATCTGGTTGTTCTATAAAAGTAGAGTG
CACAAAAGTGTGTTGTGTTTTACACTAAGATTTGGAGAAAATGTGTTGTGGCAAATTACAGTTA
CTATGCTTTCTATATCATTTTCTGTAAAAGATGCAAGATTTGAGGACTATAAAGTAATCACAGC
ATACAAATGGAAACAGCTTCTACCTTTCAGGTAACGCAGTCACTGACAGGGTCTATCAGTTATG
TGTGAACTAAAACACTGGCAAAATAACCCACCAATAAACACAGCTACCGAATAGAATGCCTTTT
AATGTGAATTACTTTGAACACCCTTCTTAATACTGAAAAGGGTTTTAGTTAACATCTATATTTA
AAAGTATACTGAGTGTGGACAGCAGTTTAAAAGCATTGCTCTTTTTTGCTCTTTGCTCTCCTGA
TTTTTAAGATGTGCAAATCACATTTTCACCTGCCATTCGCATAAAAGCACAGGTTGCCAAGAGA
GTGGAGAGACGGGTTAGCTGGTGCGCAGCGAGCTGAAAGTCCAGGGTGAGCGCAGAGACCTGTG
GCCGAGTGCTGAATTGCTAGTGAGGACAAATGGGATGCACCGGGCCAGGACAGAGTTAAACATG
ACTGTGAGGAGAAGCACAATGCACAAATGAGATCTTGAGCTGGTTTTGTTTTGTTTTTTTGTCC
CGTGCCCCCCAGGTACATAGTTAACAAAAAAACTGGAAAAGTTCATTTTCAAATGTTCTGGATG
TAATAGTTTAACAAATACTTAAAACTGAAGATGAAATATGAGGTGTATGCTTAGATTACTATTA
GGAGTCTGATAAATGCTCTCTAACAAAGCCAGACATCAGAGAGTAGTGTGAAGGGAGAGGAGAC
AAACTGAAATGTTCAAATTATACAGTGTCTGAGGGGACCTGATTTTCTTGTGGTCACTTTTCCT
GTCAGAATTTCTGTTGAAAAGATTTTCCCACAGTTAAAGTCAAAGGGGGGAATCCTCCTTAATT
TAGTGTTTTAGTGTATGCTATCAATTAACAAATTAGCAAGCAAATGTATAAACATAATCTAGCA
TTACCCAGCTACGACACTTGCTTCAAAGAGGTAGGTTTGACGATGAGATCTGTTTCGTTAACTA
CATAGTAGACGTGGTTTGGGGGAATTAAGCCACAGGGTAGCACAGGTTTCTCCAAGCGGCATGT
CCAATTTTCCTTAACAAGACAGGGCTCAGGCAAAGTTACTTAACTTGTAAAATTAAGGTGAATG
AAAAGAGCCATTTCCTCTCCTCCCATCTCTCTCACCTTCCTTCCTGGGAGGGCCCAGAAAAGCC
CCACCTCCTGTGCATGCTGCCTCTCCTCTTGGGTTGTCAAAGCCGGGATGGAATTGGCTGCTGC
TTCTGACTTTGATGCTTCATACACTTTGAGGATCCAGATTTTCAGATCTGGAGAGGAAAAGAGG
AACCAGAGAAGCATAGTATCTTTTCCCACTCTTCATGATGCTTTTCATTTGAAGGCCCATTTCT
AGAACTTCAATAAACAACGAACAGTCTAATTGGACCTTTCTGCCTGGTGGTCCAGATCGAACCC
AGACCTCCAGCATGCTAGACGGCTCTTCTCTCCTGAGCTATGTGCCGGAGTTCCCCTTTTGGAA
ACGACAAAAACCCTAGAGAAATAATCTGTCTCTAACAAGGTTGACACTACAACGTGGATAGATA
ATGTTTTTGTAAAGACTAGACCTCAGCGTCTTCCCCTTTCCCTTCTGTCTCCTAATCCGGGATC
CTGCTGATCCTGCCTTAGCGTCCCGTGCTCTGTAGAGATGTAAGCTGACACATTTAGGTTCTTC
GTTTTGCGAGGCAGGGTCTTGCTTTATAGCTCAAGAGAATTGGGAATGGAAGTCTCCATTCTTT
TAGCCCTCCTCCAGGAGAGCTGAGATTACAGTAATGCAGCGCCGTGCCCAGCTAATTTCACATA
TTTTTAAAGTGAGAATTTTCAGAGAAATGACCCATGTGGGTAACATGGTCTCTAGCAAAAGTTT
AATTCACTTTTAAACTTTTAACTCTGAGCAAAAAAAAAAAAAAAAAAATTAATTAGAAGAAAGG
ATTCCAGAGGGTACTGGTAAAAGATTTAAACTGAGTGTGGTAGTTTTATACCTATAACCCCAGC
GAGCAGAGAGGCTAGGCTAGGTTCATGGTTACCACTTGAGTTCAGGGCTATATTGGTCTTTACG
TGGTAAGATCGTCTCAGAAAAGTTAAAGACATTAATGTATACAGCTTGTTAAGACAGGACAGTA
ATGGGCTTGCAAAAATATGAACATAGGCCAGGTGTGGTAGTGTACCCCTTTAATTCCAGCACTC
AGGAAGCAGCCAAGGCTGCACAGAGAGACATTCTCAGAAAACCGAATACAAAACAAAAACAAAG
TGTGAATTTGAGCATACACCAATATATAGAAGTTATGGGAGGAGGCATAGGCTTTCAAGACATT
TGACTAGGCTGATCCAGCTATAACTGAAGTACCAAGCTCCCGGTGGTTCTGAGCATGCCCAGGG
TGTGCCCCAAAATGCCTGGTGGTAGTGGATGATGGTAATTTTCTCACTGGTTAAATCACTTTAC
ATTTTACCTCTGAGAAATCTCCCTAAGAACCAGTGTAATAGTTTAGTATTGGAAAGTAAAACCT
GTCATTAACACAAGACAAATCAGTACCAAAAGAAAAGCACCTGAACGTGTCTATGTACATATGG
CTGAAAAGTTTAAAGTTGGACATACCTGATTTGAACTGGGTTTATCCTAACTTGAGAGCTGGGT
ATGATGTCACAAACTTATAAACACAGCATTTGGGAAGTTAAACCAGGAGCATTAACAGCTCAAG
GCCAGCCTGGAGTATGTGATAACCTGTCACAAGTTGTTTGAAAGAAAGAAAAGAAAAGACATCT
TTGAGAACAGCCAGAGCTATACAGAGAAACTGTCTCAAAACAACA

hide sequence

RefSeq Acc Id:

XM_039112272 ⟹ XP_038968200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,838,330 - 100,848,362 (+)	NCBI
mRatBN7.2	6	95,097,784 - 95,114,753 (+)	NCBI

RefSeq Acc Id:

XM_039112273 ⟹ XP_038968201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,838,330 - 100,864,019 (+)	NCBI
mRatBN7.2	6	95,097,783 - 95,125,811 (+)	NCBI

RefSeq Acc Id:

XM_039112274 ⟹ XP_038968202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,838,330 - 100,856,733 (+)	NCBI
mRatBN7.2	6	95,097,784 - 95,121,065 (+)	NCBI

RefSeq Acc Id:

XM_063261928 ⟹ XP_063117998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,832,506 - 100,856,733 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004444	(Get FASTA)	NCBI Sequence Viewer
	XP_006240303	(Get FASTA)	NCBI Sequence Viewer
	XP_006240305	(Get FASTA)	NCBI Sequence Viewer
	XP_038968200	(Get FASTA)	NCBI Sequence Viewer
	XP_038968201	(Get FASTA)	NCBI Sequence Viewer
	XP_038968202	(Get FASTA)	NCBI Sequence Viewer
	XP_063117998	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAU09083	(Get FASTA)	NCBI Sequence Viewer
	EDM03660	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072596.1
	ENSRNOP00000080670.1
	ENSRNOP00000081356
	ENSRNOP00000081356.1
	ENSRNOP00000097406
	ENSRNOP00000097406.1

RefSeq Acc Id:

NP_001004444 ⟸ NM_001004444

- UniProtKB:

Q672J3 (UniProtKB/TrEMBL), E9PT64 (UniProtKB/TrEMBL), A0A8I5ZRA2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKPSHSSYVLQQLNNQREWGFLCDCCIAIDDTYFQAHKAVLAACSSYFRMFFMNHQHSTAQLN
LSNMKISAECFDLILQFMYLGKILTAPSSFEQFKVAMNYLQLYNVPDCLEDIQDSDCSSSKCSS
SASSKHNSKMIFGVRMYEDTVARNGSEANRWSAEPSSTVNTPHNREPEEESLPLANFPEPLFDV
CKKSSVSKLSTPKERVSRRFGRSFTCDSCGFGFSCEKLLDEHVLTCTNRHSYQSTARAYHRVVD
ARDGKDSAIKAELGDKGSPTAFSAHTDKYREDASQAPDDSASPTGSRKSTVESGTAGEEKSRAA
ETKRVVIKMEPEDVPADDMKDFTIVKVTEKDCNESTDNDELEDEPEEPFYRYYVEEDVGIKKSG
RKTLKPRMSVGVDERGGLENMRPPNNSSPRQEDAENASCELCGLTITEEDLSSHYLAKHIENIC
ACGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNTDEKMDMEENPDEQSEIRDMFVEMLDDFR
DNHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQDMFKGAVMEENERDHRR
KHFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMHKGMARYVCSICD
QGNFRKHDHVRHMISHLSGGETICQVCFQIFPNNEQLEQHMDVHLYTCGICGAKFNLRKDMRSH
YNAKHLKRT

hide sequence

RefSeq Acc Id:	XP_006240303 ⟸ XM_006240241
- Peptide Label:	isoform X2
- UniProtKB:	Q672J3 (UniProtKB/TrEMBL), E9PT64 (UniProtKB/TrEMBL), A0A8I5ZRA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKPSHSSYVLQQLNNQREWGFLCDCCIAIDDTYFQAHKAVLAACSSYFRMFFMNHQHSTAQLN LSNMKISAECFDLILQFMYLGKILTAPSSFEQFKVAMNYLQLYNVPDCLEDIQDSDCSSSKCSS SASSKHNSKMIFGVRMYEDTVARNGSEANRWSAEPSSTVNTPHNREPEEESLPLANFPEPLFDV CKKSSVSKLSTPKERVSRRFGRSFTCDSCGFGFSCEKLLDEHVLTCTNRHSYQSTARAYHRVVD ARDGKDSAIKAELGDKGSPTAFSAHTDKYREDASQAPDDSASPTGSRKSTVESGTAGEEKSRAA ETKRVVIKMEPEDVPADDMKDFTIVKVTEKDCNESTDNDELEDEPEEPFYRYYVEEDVGIKKSG RKTLKPRMSVGVDERGGLENMRPPNNSSPRQEDAENASCELCGLTITEEDLSSHYLAKHIENIC ACGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNTDEKMDMEENPDEQSEIRDMFVEMLDDFR DNHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQDMFKGAVMEENERDHRR KHFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMHKGMARYVCSICD QGNFRKHDHVRHMISHLSGGETICQVCFQIFPNNEQLEQHMDVHLYTCGICGAKFNLRKDMRSH YNAKHLKRT hide sequence

RefSeq Acc Id:	XP_006240305 ⟸ XM_006240243
- Peptide Label:	isoform X2
- UniProtKB:	Q672J3 (UniProtKB/TrEMBL), E9PT64 (UniProtKB/TrEMBL), A0A8I5ZRA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKPSHSSYVLQQLNNQREWGFLCDCCIAIDDTYFQAHKAVLAACSSYFRMFFMNHQHSTAQLN LSNMKISAECFDLILQFMYLGKILTAPSSFEQFKVAMNYLQLYNVPDCLEDIQDSDCSSSKCSS SASSKHNSKMIFGVRMYEDTVARNGSEANRWSAEPSSTVNTPHNREPEEESLPLANFPEPLFDV CKKSSVSKLSTPKERVSRRFGRSFTCDSCGFGFSCEKLLDEHVLTCTNRHSYQSTARAYHRVVD ARDGKDSAIKAELGDKGSPTAFSAHTDKYREDASQAPDDSASPTGSRKSTVESGTAGEEKSRAA ETKRVVIKMEPEDVPADDMKDFTIVKVTEKDCNESTDNDELEDEPEEPFYRYYVEEDVGIKKSG RKTLKPRMSVGVDERGGLENMRPPNNSSPRQEDAENASCELCGLTITEEDLSSHYLAKHIENIC ACGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNTDEKMDMEENPDEQSEIRDMFVEMLDDFR DNHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQDMFKGAVMEENERDHRR KHFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMHKGMARYVCSICD QGNFRKHDHVRHMISHLSGGETICQVCFQIFPNNEQLEQHMDVHLYTCGICGAKFNLRKDMRSH YNAKHLKRT hide sequence

RefSeq Acc Id:

ENSRNOP00000072596 ⟸ ENSRNOT00000078498

RefSeq Acc Id:	XP_038968201 ⟸ XM_039112273
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038968202 ⟸ XM_039112274
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038968200 ⟸ XM_039112272
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000097406 ⟸ ENSRNOT00000110356

RefSeq Acc Id:

ENSRNOP00000081356 ⟸ ENSRNOT00000119538

RefSeq Acc Id:

ENSRNOP00000080670 ⟸ ENSRNOT00000117277

RefSeq Acc Id:	XP_063117998 ⟸ XM_063261928
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K3D7 (UniProtKB/TrEMBL)

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K3D7-F1-model_v2	AlphaFold	A0A0G2K3D7	1-644	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694683

Promoter ID:

EPDNEW_R5200

Type:

single initiation site

Name:

Zbtb1_1

Description:

zinc finger and BTB domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	99,402,379 - 99,402,439	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303095	AgrOrtholog
BioCyc Gene	G2FUF-37063	BioCyc
Ensembl Genes	ENSRNOG00000058593	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000078498.2	UniProtKB/TrEMBL
	ENSRNOT00000110356.1	UniProtKB/TrEMBL
	ENSRNOT00000117277.1	UniProtKB/TrEMBL
	ENSRNOT00000119538.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:314246	UniProtKB/TrEMBL
NCBI Gene	314246	ENTREZGENE
PANTHER	GM08392P	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN CONTAINING 1	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb1	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000058593	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K3D7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZRA2	ENTREZGENE, UniProtKB/TrEMBL
	E9PT64	ENTREZGENE
	Q672J3	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	E9PT64	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Zbtb1	zinc finger and BTB domain containing 1			Symbol and Name status set to approved	1299863	APPROVED
2005-02-14	Zbtb1	zinc finger and BTB domain containing 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar