Ablim2 (actin binding LIM protein family, member 2)

Gene: Ablim2 (actin binding LIM protein family, member 2) Rattus norvegicus

Analyze

Symbol:

Ablim2

Name:

actin binding LIM protein family, member 2

RGD ID:

1303094

Description:

Predicted to enable actin filament binding activity. Predicted to be involved in lamellipodium assembly. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in myofibril. Predicted to be active in actin cytoskeleton. Orthologous to human ABLIM2 (actin binding LIM protein family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

abLIM-2; actin-binding LIM protein 2; actin-binding LIM protein family member 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABLIM2 (actin binding LIM protein family member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Ablim2 (actin-binding LIM protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ablim2 (actin binding LIM protein family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABLIM2 (actin binding LIM protein family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABLIM2 (actin binding LIM protein family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ablim2 (actin binding LIM protein family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABLIM2 (actin binding LIM protein family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABLIM2 (actin binding LIM protein family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ablim2 (actin binding LIM protein family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ABLIM2 (actin binding LIM protein family member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ablim2 (actin-binding LIM protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ablim2 (actin binding LIM protein family, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Unc-115a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Unc-115b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-115	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ablim2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	79,090,046 - 79,214,986 (-)	NCBI		GRCr8
mRatBN7.2	14	74,865,409 - 74,990,334 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	74,866,281 - 74,990,334 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	79,307,813 - 79,431,924 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	80,548,687 - 80,672,784 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	76,993,677 - 77,117,778 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	80,044,217 - 80,169,491 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	80,045,078 - 80,169,472 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	79,675,672 - 79,799,079 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	80,499,878 - 80,624,108 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	80,502,268 - 80,626,499 (-)	NCBI
Celera	14	73,798,130 - 73,922,188 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

High Myopia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

C60 fullerene (EXP)

chlorpyrifos (ISO)

clozapine (ISO)

dexamethasone (ISO)

ethanol (ISO)

folic acid (ISO)

indometacin (ISO)

iron dichloride (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (EXP)

paracetamol (EXP,ISO)

paraquat (EXP,ISO)

permethrin (EXP)

phenobarbital (ISO)

pioglitazone (ISO)

progesterone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

toluene (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoskeleton organization (IEA)

lamellipodium assembly (IBA,IEA)

positive regulation of transcription by RNA polymerase II (ISO)

transcription by RNA polymerase II (ISO)

Cellular Component

actin cytoskeleton (IBA,IEA,ISO)

cytoplasm (IEA)

myofibril (ISO)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,IEA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:16005990	PMID:17194709	PMID:29476059

Genomics

Comparative Map Data

Ablim2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	79,090,046 - 79,214,986 (-)	NCBI		GRCr8
mRatBN7.2	14	74,865,409 - 74,990,334 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	74,866,281 - 74,990,334 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	79,307,813 - 79,431,924 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	80,548,687 - 80,672,784 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	76,993,677 - 77,117,778 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	80,044,217 - 80,169,491 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	80,045,078 - 80,169,472 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	79,675,672 - 79,799,079 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	80,499,878 - 80,624,108 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	80,502,268 - 80,626,499 (-)	NCBI
Celera	14	73,798,130 - 73,922,188 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

ABLIM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	7,965,327 - 8,158,813 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	7,965,310 - 8,158,832 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	7,967,054 - 8,160,540 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	8,017,938 - 8,211,459 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	8,085,111 - 8,278,609	NCBI
Celera	4	7,868,198 - 8,052,469 (-)	NCBI		Celera
Cytogenetic Map	4	p16.1	NCBI
HuRef	4	7,888,374 - 8,079,979 (-)	NCBI		HuRef
CHM1_1	4	7,965,064 - 8,158,514 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	7,943,879 - 8,137,197 (-)	NCBI		T2T-CHM13v2.0

Ablim2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	35,915,200 - 36,042,323 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	35,915,224 - 36,042,317 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	35,757,855 - 35,884,979 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	35,757,880 - 35,884,973 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	36,100,529 - 36,227,628 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	36,074,792 - 36,201,831 (+)	NCBI		MGSCv36	mm8
Celera	5	33,231,426 - 33,358,448 (+)	NCBI		Celera
Cytogenetic Map	5	B3	NCBI
cM Map	5	18.75	NCBI

Ablim2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	2,800,802 - 2,919,978 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	2,800,758 - 2,920,926 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABLIM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	8,247,435 - 8,445,155 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	8,175,443 - 8,372,335 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	4	8,029,394 - 8,225,050 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	8,031,074 - 8,224,912 (-)	Ensembl	panpan1.1		panPan2

ABLIM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	59,838,929 - 59,980,971 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	59,838,934 - 59,986,723 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	62,487,740 - 62,629,499 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	60,311,073 - 60,453,659 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	60,311,076 - 60,453,669 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	59,807,453 - 59,949,385 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	60,009,926 - 60,152,407 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	60,368,560 - 60,510,409 (-)	NCBI		UU_Cfam_GSD_1.0

Ablim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	65,725,286 - 65,860,955 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	19,428,475 - 19,562,488 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	19,426,962 - 19,562,608 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABLIM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	2,916,775 - 3,054,969 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	2,948,948 - 3,054,974 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	4,172,649 - 4,301,272 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABLIM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	43,916,680 - 44,108,157 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666051	234,454 - 430,498 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ablim2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	23,779,278 - 23,891,360 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	23,778,298 - 23,891,476 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ablim2
886 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	619
Count of miRNA genes:	243
Interacting mature miRNAs:	309
Transcripts:	ENSRNOT00000010482, ENSRNOT00000058315
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat

Markers in Region

RH133082

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	74,865,942 - 74,866,138 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	80,044,740 - 80,044,935	NCBI	Rnor6.0
Rnor_5.0	14	79,676,195 - 79,676,390	UniSTS	Rnor5.0
RGSC_v3.4	14	80,499,540 - 80,499,735	UniSTS	RGSC3.4
Celera	14	73,797,792 - 73,797,987	UniSTS
Cytogenetic Map	14	q21	UniSTS

BF391064

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	74,892,070 - 74,892,222 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	80,070,858 - 80,071,009	NCBI	Rnor6.0
Rnor_5.0	14	79,701,914 - 79,702,065	UniSTS	Rnor5.0
RGSC_v3.4	14	80,525,904 - 80,526,055	UniSTS	RGSC3.4
Celera	14	73,823,959 - 73,824,110	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium							8	11	46		1		8
Low	3	33	33	17	19	17			22	23	26	11
Below cutoff		10	24	24		24			6	12	14

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001001514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001177695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ703892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ703893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000010482 ⟹ ENSRNOP00000010482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	74,866,281 - 74,990,334 (-)	Ensembl
Rnor_6.0 Ensembl	14	80,045,766 - 80,130,139 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000058315 ⟹ ENSRNOP00000055116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	74,866,281 - 74,990,334 (-)	Ensembl
Rnor_6.0 Ensembl	14	80,045,078 - 80,169,472 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079769 ⟹ ENSRNOP00000068643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	74,866,281 - 74,990,334 (-)	Ensembl
Rnor_6.0 Ensembl	14	80,056,269 - 80,169,431 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091652 ⟹ ENSRNOP00000070221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	74,866,281 - 74,990,334 (-)	Ensembl
Rnor_6.0 Ensembl	14	80,045,766 - 80,130,139 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097779 ⟹ ENSRNOP00000089295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	74,866,281 - 74,951,001 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117114 ⟹ ENSRNOP00000077852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	74,866,281 - 74,951,001 (-)	Ensembl

RefSeq Acc Id:

NM_001001514 ⟹ NP_001001514

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,923 - 79,214,972 (-)	NCBI
mRatBN7.2	14	74,866,281 - 74,990,334 (-)	NCBI
Rnor_6.0	14	80,045,078 - 80,169,472 (-)	NCBI
Rnor_5.0	14	79,675,672 - 79,799,079 (-)	NCBI
RGSC_v3.4	14	80,499,878 - 80,624,108 (-)	RGD
Celera	14	73,798,130 - 73,922,188 (-)	RGD

Sequence:

show sequence

GGGAGCCCCGATCTGCGGTGGCTCTGCGGGCAGCGGGTACTGTGTGCGCCGAGCCGCTGGCCTC
AAGCGTGCTGAGGATCGTGCCAGCGCCGCACCTGCCGGCCCAGTCCTCGGGCTGTCGCAGCACG
GGGACCACCCTACTGGGAGCTGCCGCTGACATGAGTGCAGTGTCGCAGCCCCAGGCTGCTCATG
CCCCACTGGAGAAGCCGGCCAGCACTGCGATCCTGTGTAATACCTGTGGGAATGTGTGCAAGGG
AGAGGTGCTGCGGGTGCAGAACAAGCACTTCCACATTAGGTGCTTTGTGTGCAAAGCATGCGGC
TGTGACCTGGCTGAGGGTGGCTTCTTCGTGAGGCAGGGTGAGCACATTTGCACACGTGACTACC
AGCGGCTCTATGGGACTCGCTGCTTCAGCTGTGACTGCTTCATTGAAGGGGAAGTGGTGTCAGC
GCTTGGGAAGACCTACCACCCTGACTGCTTCGTATGCGCTGTCTGCAGGCTGCCTTTTCCTCCT
GGGGACCGTGTGACCTTCAATGGGAAGGATTGTATGTGCCAGAAGTGTTCTCCACCCACATTGG
TGGGCAACAGTGCCCATGTGGCCCAGGGCCTCCGGAGTTGTGGGGGCTGTGGCTTAGAAATCAA
GAATGGCCAGGCACTGGTGGCTTTGGACAAGCACTGGCACCTGGGATGCTTCAAGTGCAAGACT
TGTGGGAAACTCCTCAATGCAGAGTACATCAGCAAGGATGGGCTGCCCTACTGTGAGGCTGATT
ATCACACCAAGTTTGGCATCCGCTGCGATGGCTGTGAGAAGTACATCACTGGTCGGGTGCTGGA
GGCTGGAGAGAAGCACTACCACCCTTCATGTGCGCTATGCGTCAGGTGCGGCCAGATGTTCTCA
GAGGGCGAGGAGATGTACCTGCAAGGTTCCTCCATCTGGCATCCGGCATGTCGGCAAGCAGCCA
GGACTGAAGACAAGAGCAAGGAAACCAGGACTTCCTCAGAGAGCATTGTCTCTGTGCCTGCCTC
CAGCACATCGGGGTCCCCAAGCCGTGTGATCTATGCAAAGCTTGGTGATGAGATCCTGGACTAC
AGGGATTTGGCTGCTCTTCCCAAAAACAAAGCGATCTACAACATCGACCGCCCCGACATGATCT
CCTATTCGCCCTACATTAGCCACTCGGCTGTGGGGGACAGGCAGAGCTATGGTGAGGGGGATCA
GGATGATCGGTCCTACAAGCAGTGCAGGACCTCCAGCCCCAGCTCTGCTGGCTCAGTCAGCCTT
GGGCACTACACTCCAACGTCACGATCACCCCAGCACTACAGTCGTCCAGGCAGCGAAAGTGGCC
GTAGCACTCCAAGTCTCTCAGTGCACTCCGACAGCAGGCCTCCTTCCTCTACCTATCAGCAGGC
TCCGAGACACTTCCACGTCCCAGACACTGGCGTAAAAGATAACATCTATAGGAAACCCCCTATC
TACAAACAGCACGCCGCCAGGCGACTGGACGTGGAGGACAGCAGTTTCGACCAGGATAGCAGGA
AGAAGACAACGTGGCTGCTCCTCAAGGGAGATGCAGACACCAGAACTAACTCTCCGGACTTGGA
CAGTCAGTCTCTGTCCCTCAGCAGTGGGGCTGATCAAGAACCTCTCCAAAGGATGCCAGGGGAC
AGCCTCTACTCACAGTATAAGATTTATCCCTATGATTCCCTCATCGTAACAAACCGAATTCGTG
TGAAACTGCCCAAAGATGTAGACCGGACACGGCTGGAGAGACACCTATCACCTGAAGAGTTCCA
AGAAGTGTTTGGGATGAGCATCGAGGAGTTTGACCGCCTGGCCCTGTGGAAGAGGAATGACCTC
AAGAAGAAAGCCTTGCTGTTCTGACAGCTGCCAACGTCTTACCAGGAGCCTGCTGGGGGCGTAG
GGCTGAAGGACCCCACTGGCCCCTCCAAAATCCCCTCCTGCACCTTGCTCTGCTTCTCCGTGTC
AGTGGGGCAGGCAGGGTGCCTGCAGGAGGCAGGGTGGGGCCAGGTCCTGAGGAGCATCCAGCAG
GCATGGTCCCTTGTGTAGCAAGGATGCTCCTGCCTGTAGTTTAGGGCCACGTGCCAGCTTGACC
CACTCCTTCCCGCCACAGCTGGGCATCGGGGCAGTGTTGCAGCTATCCTAGGAGACGGGGCAGA
GCATTCAGCCAGCCCAGCACCTTCCCAGGGCACCTGGTGTGCTCACACCTGTGCTAGGCACTGG
GGCACAGAGTGTCTGGGATGTGAGTGAAAGGCTTGTCAGTGGCAGACCCTGACACAGTAGTAAT
GGTAAGTGCAAGACTCCTCAGTGCACGAGGAGGCATCGGGCAGACTGGCAGGCTGAGGCAGGGG
AGCCAGGCCAGTGTCTGAGAGGCAGTGGGGCTGTGTTTTTCGCAGTTATTGTGATGGATCTTTT
CTGGGGAATGAATGTCGACCTGACAGGGTGCCCCCCACTAGTGCTGTGCATTTGTATTGTGCCC
TTCTTCCGGATCACCCCCTTAGTTGCCTAAATGATATCTTTCAAGTTACACAGAAGTTTTTATT
TTATTAAA

hide sequence

RefSeq Acc Id:

NM_001177695 ⟹ NP_001171166

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,923 - 79,214,972 (-)	NCBI
mRatBN7.2	14	74,866,281 - 74,990,334 (-)	NCBI
Rnor_6.0	14	80,045,078 - 80,169,472 (-)	NCBI
Rnor_5.0	14	79,675,672 - 79,799,079 (-)	NCBI
Celera	14	73,798,130 - 73,922,188 (-)	NCBI

Sequence:

show sequence

GGGAGCCCCGATCTGCGGTGGCTCTGCGGGCAGCGGGTACTGTGTGCGCCGAGCCGCTGGCCTC
AAGCGTGCTGAGGATCGTGCCAGCGCCGCACCTGCCGGCCCAGTCCTCGGGCTGTCGCAGCACG
GGGACCACCCTACTGGGAGCTGCCGCTGACATGAGTGCAGTGTCGCAGCCCCAGGCTGCTCATG
CCCCACTGGAGAAGCCGGCCAGCACTGCGATCCTGTGTAATACCTGTGGGAATGTGTGCAAGGG
AGAGGTGCTGCGGGTGCAGAACAAGCACTTCCACATTAGGTGCTTTGTGTGCAAAGCATGCGGC
TGTGACCTGGCTGAGGGTGGCTTCTTCGTGAGGCAGGGTGAGCACATTTGCACACGTGACTACC
AGCGGCTCTATGGGACTCGCTGCTTCAGCTGTGACTGCTTCATTGAAGGGGAAGTGGTGTCAGC
GCTTGGGAAGACCTACCACCCTGACTGCTTCGTATGCGCTGTCTGCAGGCTGCCTTTTCCTCCT
GGGGACCGTGTGACCTTCAATGGGAAGGATTGTATGTGCCAGAAGTGTTCTCCACCCACATTGG
TGGGCAACAGTGCCCATGTGGCCCAGGGCCTCCGGAGTTGTGGGGGCTGTGGCTTAGAAATCAA
GAATGGCCAGGCACTGGTGGCTTTGGACAAGCACTGGCACCTGGGATGCTTCAAGTGCAAGACT
TGTGGGAAACTCCTCAATGCAGAGTACATCAGCAAGGATGGGCTGCCCTACTGTGAGGCTGATT
ATCACACCAAGTTTGGCATCCGCTGCGATGGCTGTGAGAAGTACATCACTGGTCGGGTGCTGGA
GGCTGGAGAGAAGCACTACCACCCTTCATGTGCGCTATGCGTCAGGTGCGGCCAGATGTTCTCA
GAGGGCGAGGAGATGTACCTGCAAGGTTCCTCCATCTGGCATCCGGCATGTCGGCAAGCAGCCA
GGACTGAAGACAAGAGCAAGGAAACCAGGACTTCCTCAGAGAGCATTGTCTCTGTGCCTGCCTC
CAGCACATCGGGGTCCCCAAGCCGTGTGATCTATGCAAAGCTTGGTGATGAGATCCTGGACTAC
AGGGATTTGGCTGCTCTTCCCAAAAACAAAGCGATCTACAACATCGACCGCCCCGACATGATCT
CCTATTCGCCCTACATTAGCCACTCGGCTGTGGGGGACAGGCAGAGCTATGGTGAGGGGGATCA
GGATGATCGGTCCTACAAGCAGTGCAGGACCTCCAGCCCCAGCTCTGCTGGCTCAGTCAGCCTT
GGGCACTACACTCCAACGTCACGATCACCCCAGCACTACAGTCGTCCAGGCAGCGAAAGTGGCC
GTAGCACTCCAAGTCTCTCAGTGCACTCCGACAGCAGGCCTCCTTCCTCTACCTATCAGCAGGC
TCCGAGACACTTCCACGTCCCAGACACTGGCGTAAAAGATAACATCTATAGGAAACCCCCTATC
TACAAACAGCACGCCGCCAGGCGACTGGACGTGGAGGACAGCAGTTTCGACCAGGATAGCAGGA
AGAAGACAACGTGGCTGCTCCTCAAGGGAGATGCAGACACCAGAACTAACTCTCCGGACTTGGA
CAGTCAGTCTCTGTCCCTCAGCAGTGGGGCTGATCAAGAACCTCTCCAAAGGATGCCAGGGGAC
AGCCTCTACTCACGCTTCCCTTATTCCAAACCCGACACTCTCCCAGGACCCAGGAAGGATGGCC
TGGACCTCCGGAATGCCAACCTGGCCCCTTGTGGAGCAGACCCGGATGCCAGCTGGGGCACGCG
AGAGTATAAGATTTATCCCTATGATTCCCTCATCGTAACAAACCGAATTCGTGTGAAACTGCCC
AAAGATGTAGACCGGACACGGCTGGAGAGACACCTATCACCTGAAGAGTTCCAAGAAGTGTTTG
GGATGAGCATCGAGGAGTTTGACCGCCTGGCCCTGTGGAAGAGGAATGACCTCAAGAAGAAAGC
CTTGCTGTTCTGACAGCTGCCAACGTCTTACCAGGAGCCTGCTGGGGGCGTAGGGCTGAAGGAC
CCCACTGGCCCCTCCAAAATCCCCTCCTGCACCTTGCTCTGCTTCTCCGTGTCAGTGGGGCAGG
CAGGGTGCCTGCAGGAGGCAGGGTGGGGCCAGGTCCTGAGGAGCATCCAGCAGGCATGGTCCCT
TGTGTAGCAAGGATGCTCCTGCCTGTAGTTTAGGGCCACGTGCCAGCTTGACCCACTCCTTCCC
GCCACAGCTGGGCATCGGGGCAGTGTTGCAGCTATCCTAGGAGACGGGGCAGAGCATTCAGCCA
GCCCAGCACCTTCCCAGGGCACCTGGTGTGCTCACACCTGTGCTAGGCACTGGGGCACAGAGTG
TCTGGGATGTGAGTGAAAGGCTTGTCAGTGGCAGACCCTGACACAGTAGTAATGGTAAGTGCAA
GACTCCTCAGTGCACGAGGAGGCATCGGGCAGACTGGCAGGCTGAGGCAGGGGAGCCAGGCCAG
TGTCTGAGAGGCAGTGGGGCTGTGTTTTTCGCAGTTATTGTGATGGATCTTTTCTGGGGAATGA
ATGTCGACCTGACAGGGTGCCCCCCACTAGTGCTGTGCATTTGTATTGTGCCCTTCTTCCGGAT
CACCCCCTTAGTTGCCTAAATGATATCTTTCAAGTTACACAGAAGTTTTTATTTTATTAAA

hide sequence

RefSeq Acc Id:

XM_063273362 ⟹ XP_063129432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,562 (-)	NCBI

RefSeq Acc Id:

XM_063273363 ⟹ XP_063129433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,214,986 (-)	NCBI

RefSeq Acc Id:

XM_063273364 ⟹ XP_063129434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,559 (-)	NCBI

RefSeq Acc Id:

XM_063273366 ⟹ XP_063129436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,557 (-)	NCBI

RefSeq Acc Id:

XM_063273367 ⟹ XP_063129437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,214,986 (-)	NCBI

RefSeq Acc Id:

XM_063273368 ⟹ XP_063129438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,573 (-)	NCBI

RefSeq Acc Id:

XM_063273369 ⟹ XP_063129439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,214,986 (-)	NCBI

RefSeq Acc Id:

XM_063273370 ⟹ XP_063129440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,533 (-)	NCBI

RefSeq Acc Id:

XM_063273371 ⟹ XP_063129441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,572 (-)	NCBI

RefSeq Acc Id:

XM_063273372 ⟹ XP_063129442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,552 (-)	NCBI

RefSeq Acc Id:

XM_063273373 ⟹ XP_063129443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,549 (-)	NCBI

RefSeq Acc Id:

XM_063273374 ⟹ XP_063129444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,562 (-)	NCBI

RefSeq Acc Id:

XM_063273375 ⟹ XP_063129445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,547 (-)	NCBI

RefSeq Acc Id:

XM_063273376 ⟹ XP_063129446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,551 (-)	NCBI

RefSeq Acc Id:

XM_063273377 ⟹ XP_063129447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,571 (-)	NCBI

RefSeq Acc Id:

XM_063273378 ⟹ XP_063129448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,567 (-)	NCBI

RefSeq Acc Id:

XM_063273379 ⟹ XP_063129449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,557 (-)	NCBI

RefSeq Acc Id:

XM_063273380 ⟹ XP_063129450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,214,984 (-)	NCBI

RefSeq Acc Id:

XM_063273381 ⟹ XP_063129451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,559 (-)	NCBI

RefSeq Acc Id:

XM_063273383 ⟹ XP_063129453

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,556 (-)	NCBI

RefSeq Acc Id:

XM_063273384 ⟹ XP_063129454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,566 (-)	NCBI

RefSeq Acc Id:

XM_063273385 ⟹ XP_063129455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,187,564 (-)	NCBI

RefSeq Acc Id:

XM_063273386 ⟹ XP_063129456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,116,646 - 79,214,986 (-)	NCBI

RefSeq Acc Id:

XM_063273387 ⟹ XP_063129457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,090,046 - 79,160,934 (-)	NCBI

RefSeq Acc Id:

XR_010057387

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,572 (-)	NCBI

RefSeq Acc Id:

XR_010057388

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,571 (-)	NCBI

RefSeq Acc Id:

XR_010057389

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,574 (-)	NCBI

RefSeq Acc Id:

XR_010057390

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,572 (-)	NCBI

RefSeq Acc Id:

XR_010057391

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,548 (-)	NCBI

RefSeq Acc Id:

XR_010057392

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,559 (-)	NCBI

RefSeq Acc Id:

XR_010057393

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,567 (-)	NCBI

RefSeq Acc Id:

XR_010057394

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,556 (-)	NCBI

RefSeq Acc Id:

XR_010057395

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,567 (-)	NCBI

RefSeq Acc Id:

XR_010057396

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,214,986 (-)	NCBI

RefSeq Acc Id:

XR_010057397

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	79,100,610 - 79,187,572 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001001514	(Get FASTA)	NCBI Sequence Viewer
	NP_001171166	(Get FASTA)	NCBI Sequence Viewer
	XP_063129432	(Get FASTA)	NCBI Sequence Viewer
	XP_063129433	(Get FASTA)	NCBI Sequence Viewer
	XP_063129434	(Get FASTA)	NCBI Sequence Viewer
	XP_063129436	(Get FASTA)	NCBI Sequence Viewer
	XP_063129437	(Get FASTA)	NCBI Sequence Viewer
	XP_063129438	(Get FASTA)	NCBI Sequence Viewer
	XP_063129439	(Get FASTA)	NCBI Sequence Viewer
	XP_063129440	(Get FASTA)	NCBI Sequence Viewer
	XP_063129441	(Get FASTA)	NCBI Sequence Viewer
	XP_063129442	(Get FASTA)	NCBI Sequence Viewer
	XP_063129443	(Get FASTA)	NCBI Sequence Viewer
	XP_063129444	(Get FASTA)	NCBI Sequence Viewer
	XP_063129445	(Get FASTA)	NCBI Sequence Viewer
	XP_063129446	(Get FASTA)	NCBI Sequence Viewer
	XP_063129447	(Get FASTA)	NCBI Sequence Viewer
	XP_063129448	(Get FASTA)	NCBI Sequence Viewer
	XP_063129449	(Get FASTA)	NCBI Sequence Viewer
	XP_063129450	(Get FASTA)	NCBI Sequence Viewer
	XP_063129451	(Get FASTA)	NCBI Sequence Viewer
	XP_063129453	(Get FASTA)	NCBI Sequence Viewer
	XP_063129454	(Get FASTA)	NCBI Sequence Viewer
	XP_063129455	(Get FASTA)	NCBI Sequence Viewer
	XP_063129456	(Get FASTA)	NCBI Sequence Viewer
	XP_063129457	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAG28314	(Get FASTA)	NCBI Sequence Viewer
	CAG28315	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010482
	ENSRNOP00000010482.8
	ENSRNOP00000055116
	ENSRNOP00000055116.5
	ENSRNOP00000068643.2
	ENSRNOP00000070221.2
	ENSRNOP00000077852.1
	ENSRNOP00000089295.1
GenBank Protein	Q6KC51	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001001514 ⟸ NM_001001514
- Peptide Label:	isoform b
- UniProtKB:	A0A140TAH7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAVSQPQAAHAPLEKPASTAILCNTCGNVCKGEVLRVQNKHFHIRCFVCKACGCDLAEGGFFV RQGEHICTRDYQRLYGTRCFSCDCFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKD CMCQKCSPPTLVGNSAHVAQGLRSCGGCGLEIKNGQALVALDKHWHLGCFKCKTCGKLLNAEYI SKDGLPYCEADYHTKFGIRCDGCEKYITGRVLEAGEKHYHPSCALCVRCGQMFSEGEEMYLQGS SIWHPACRQAARTEDKSKETRTSSESIVSVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNK AIYNIDRPDMISYSPYISHSAVGDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSP QHYSRPGSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAARRLD VEDSSFDQDSRKKTTWLLLKGDADTRTNSPDLDSQSLSLSSGADQEPLQRMPGDSLYSQYKIYP YDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF hide sequence

RefSeq Acc Id:	NP_001171166 ⟸ NM_001177695
- Peptide Label:	isoform a
- UniProtKB:	Q6KC50 (UniProtKB/Swiss-Prot), Q6KC51 (UniProtKB/Swiss-Prot), A0A140TAH7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAVSQPQAAHAPLEKPASTAILCNTCGNVCKGEVLRVQNKHFHIRCFVCKACGCDLAEGGFFV RQGEHICTRDYQRLYGTRCFSCDCFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKD CMCQKCSPPTLVGNSAHVAQGLRSCGGCGLEIKNGQALVALDKHWHLGCFKCKTCGKLLNAEYI SKDGLPYCEADYHTKFGIRCDGCEKYITGRVLEAGEKHYHPSCALCVRCGQMFSEGEEMYLQGS SIWHPACRQAARTEDKSKETRTSSESIVSVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNK AIYNIDRPDMISYSPYISHSAVGDRQSYGEGDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSP QHYSRPGSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPDTGVKDNIYRKPPIYKQHAARRLD VEDSSFDQDSRKKTTWLLLKGDADTRTNSPDLDSQSLSLSSGADQEPLQRMPGDSLYSRFPYSK PDTLPGPRKDGLDLRNANLAPCGADPDASWGTREYKIYPYDSLIVTNRIRVKLPKDVDRTRLER HLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF hide sequence

RefSeq Acc Id:

ENSRNOP00000068643 ⟸ ENSRNOT00000079769

RefSeq Acc Id:

ENSRNOP00000010482 ⟸ ENSRNOT00000010482

RefSeq Acc Id:

ENSRNOP00000055116 ⟸ ENSRNOT00000058315

RefSeq Acc Id:

ENSRNOP00000070221 ⟸ ENSRNOT00000091652

RefSeq Acc Id:

ENSRNOP00000089295 ⟸ ENSRNOT00000097779

RefSeq Acc Id:

ENSRNOP00000077852 ⟸ ENSRNOT00000117114

RefSeq Acc Id:	XP_063129439 ⟸ XM_063273369
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063129437 ⟸ XM_063273367
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063129433 ⟸ XM_063273363
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063129450 ⟸ XM_063273380
- Peptide Label:	isoform X18
- UniProtKB:	A0A0G2JXC7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129438 ⟸ XM_063273368
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063129441 ⟸ XM_063273371
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063129447 ⟸ XM_063273377
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063129448 ⟸ XM_063273378
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063129454 ⟸ XM_063273384
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_063129455 ⟸ XM_063273385
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_063129444 ⟸ XM_063273374
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063129432 ⟸ XM_063273362
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063129434 ⟸ XM_063273364
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063129451 ⟸ XM_063273381
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_063129449 ⟸ XM_063273379
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_063129436 ⟸ XM_063273366
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063129453 ⟸ XM_063273383
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_063129442 ⟸ XM_063273372
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063129446 ⟸ XM_063273376
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063129443 ⟸ XM_063273373
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063129445 ⟸ XM_063273375
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063129440 ⟸ XM_063273370
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063129457 ⟸ XM_063273387
- Peptide Label:	isoform X24

RefSeq Acc Id:	XP_063129456 ⟸ XM_063273386
- Peptide Label:	isoform X23

Protein Domains

HP LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6KC51-F1-model_v2	AlphaFold	Q6KC51	1-612	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699394

Promoter ID:

EPDNEW_R9912

Type:

single initiation site

Name:

Ablim2_1

Description:

actin binding LIM protein family, member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	80,169,463 - 80,169,523	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303094	AgrOrtholog
BioCyc Gene	G2FUF-15329	BioCyc
Ensembl Genes	ENSRNOG00000007882	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010482	ENTREZGENE
	ENSRNOT00000010482.8	UniProtKB/TrEMBL
	ENSRNOT00000058315	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000058315.6	UniProtKB/Swiss-Prot
	ENSRNOT00000079769.2	UniProtKB/TrEMBL
	ENSRNOT00000091652.2	UniProtKB/TrEMBL
	ENSRNOT00000097779.1	UniProtKB/TrEMBL
	ENSRNOT00000117114.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.950.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cysteine Rich Protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	AbLIM_anchor	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Villin_headpiece	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Villin_headpiece_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:360958	UniProtKB/Swiss-Prot
NCBI Gene	360958	ENTREZGENE
PANTHER	ACTIN-BINDING LIM PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR24213:SF6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	AbLIM_anchor	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	VHP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ablim2	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PS51089	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007882	RatGTEx
SMART	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	VHP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47050	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JTB5_RAT	UniProtKB/TrEMBL
	A0A0G2JXC7	ENTREZGENE, UniProtKB/TrEMBL
	A0A0H2UHF9_RAT	UniProtKB/TrEMBL
	A0A140TAH7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XWK5_RAT	UniProtKB/TrEMBL
	A0A8I6ABD5_RAT	UniProtKB/TrEMBL
	ABLM2_RAT	UniProtKB/Swiss-Prot
	Q6KC50	ENTREZGENE
	Q6KC51	ENTREZGENE
UniProt Secondary	Q6KC50	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-11-01	Ablim2	actin-binding LIM protein 2	Ablim2	actin binding LIM protein family, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-08-29	Ablim2	actin binding LIM protein family, member 2	Ablim2	actin-binding LIM protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Ablim2	actin-binding LIM protein 2			Symbol and Name status set to approved	1299863	APPROVED
2005-02-14	Ablim2	actin-binding LIM protein 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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