Ly96 (lymphocyte antigen 96) - Rat Genome Database

Name: Ly96
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ly96 (lymphocyte antigen 96) Rattus norvegicus

Analyze

Symbol:

Ly96

Name:

lymphocyte antigen 96

RGD ID:

1302993

Description:

Predicted to enable lipopolysaccharide immune receptor activity. Predicted to be involved in pattern recognition receptor signaling pathway; positive regulation of tumor necrosis factor production; and response to lipopolysaccharide. Predicted to act upstream of or within positive regulation of lipopolysaccharide-mediated signaling pathway and response to lipopolysaccharide. Predicted to be located in plasma membrane. Predicted to be part of lipopolysaccharide receptor complex. Orthologous to human LY96 (lymphocyte antigen 96); PARTICIPATES IN Toll-like receptor signaling pathway; toxoplasmosis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LPS co-receptor MD-2; MD-2; MD2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LY96 (lymphocyte antigen 96)	HGNC	HomoloGene, NCBI
Mus musculus (house mouse):	Ly96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ly96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LY96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LY96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ly96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LY96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LY96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ly96 (lymphocyte antigen 96)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LY96 (lymphocyte antigen 96)	Alliance	DIOPT (HGNC)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	7,365,536 - 7,397,864 (-)	NCBI		GRCr8
mRatBN7.2	5	2,582,233 - 2,612,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	2,582,254 - 2,612,386 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	4,700,247 - 4,729,411 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	6,339,109 - 6,368,273 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	6,037,630 - 6,066,747 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	1,972,212 - 1,989,448 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	1,967,544 - 1,984,775 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	1,701,969 - 1,705,247 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	2,204,184 - 2,228,082 (-)	NCBI		Celera
Cytogenetic Map	5	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bacterial Keratitis (ISO)

carcinoma (ISO)

Charcot-Marie-Tooth disease axonal type 2K (ISO)

Charcot-Marie-Tooth disease type 4A (ISO)

cholestasis (ISO)

Colorectal Neoplasms (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

mitochondrial complex V (ATP synthase) deficiency nuclear type 2 (ISO)

Neoplasm Metastasis (ISO)

rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

adenosine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

amitrole (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atazanavir sulfate (ISO)

azathioprine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chenodeoxycholic acid (ISO)

chlorpyrifos (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

deoxycholic acid (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dioxygen (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

epoxiconazole (ISO)

ethanol (EXP)

ethyl methanesulfonate (ISO)

ferroheme b (ISO)

fluoranthene (ISO)

folic acid (ISO)

formaldehyde (ISO)

fucoxanthin (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glucose (ISO)

glycochenodeoxycholic acid (ISO)

glycocholic acid (ISO)

glycodeoxycholic acid (ISO)

glycyrrhetinate (ISO)

glycyrrhetinic acid (ISO)

heme b (ISO)

hydrogen peroxide (ISO)

hydroquinone (ISO)

indole-3-methanol (EXP)

indometacin (ISO)

lead diacetate (ISO)

lipopolysaccharide (ISO)

melatonin (EXP)

mercury dichloride (EXP)

methamphetamine (ISO)

methapyrilene (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

Morroniside (ISO)

N-methylformamide (ISO)

N-nitrosodiethylamine (ISO)

N-nitrosodimethylamine (EXP)

nefazodone (ISO)

nickel dichloride (ISO)

O-methyleugenol (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

platycodin D (EXP)

prednisolone (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

procyanidin B1 (ISO)

propanal (ISO)

quercetin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

succimer (ISO)

tartrazine (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

triclosan (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to lipopolysaccharide (ISO)

detection of lipopolysaccharide (ISO)

innate immune response (IEA)

lipopolysaccharide-mediated signaling pathway (ISO)

positive regulation of lipopolysaccharide-mediated signaling pathway (ISO)

positive regulation of tumor necrosis factor production (ISO)

response to lipopolysaccharide (ISO)

toll-like receptor 4 signaling pathway (ISO)

toll-like receptor signaling pathway (ISO)

Cellular Component

lipopolysaccharide receptor complex (ISO)

plasma membrane (ISO)

receptor complex (ISO)

Molecular Function

lipopolysaccharide binding (IEA)

lipopolysaccharide immune receptor activity (ISO)

protein binding (ISO)

Toll-like receptor 4 binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Toll-like receptor signaling pathway (IEA,ISO)

toxoplasmosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Toll-like receptors.	Moresco EM, etal., Curr Biol. 2011 Jul 12;21(13):R488-93. doi: 10.1016/j.cub.2011.05.039.
2.	Myeloid differentiation 2 as a therapeutic target of inflammatory disorders.	Park SH, etal., Pharmacol Ther. 2012 Mar;133(3):291-8. doi: 10.1016/j.pharmthera.2011.11.001. Epub 2011 Nov 19.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Innate immune regulation of Serratia marcescens-induced corneal inflammation and infection.	Zhou R, etal., Invest Ophthalmol Vis Sci. 2012 Oct 25;53(11):7382-8. doi: 10.1167/iovs.12-10238.

Additional References at PubMed

PMID:10880523	PMID:11274165	PMID:12594207	PMID:16386178	PMID:19252480	PMID:19584052	PMID:20023008	PMID:20646617	PMID:21849156	PMID:23568774	PMID:24380872	PMID:25342286
PMID:28965884	PMID:33181267

Genomics

Comparative Map Data

Ly96
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	7,365,536 - 7,397,864 (-)	NCBI		GRCr8
mRatBN7.2	5	2,582,233 - 2,612,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	2,582,254 - 2,612,386 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	4,700,247 - 4,729,411 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	6,339,109 - 6,368,273 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	6,037,630 - 6,066,747 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	1,972,212 - 1,989,448 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	1,967,544 - 1,984,775 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	1,701,969 - 1,705,247 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	2,204,184 - 2,228,082 (-)	NCBI		Celera
Cytogenetic Map	5	q11	NCBI

LY96
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	73,991,392 - 74,099,857 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	73,991,392 - 74,029,079 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	74,903,627 - 74,941,314 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	75,066,144 - 75,103,859 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	75,066,143 - 75,103,859	NCBI
Celera	8	70,901,437 - 70,939,164 (+)	NCBI		Celera
Cytogenetic Map	8	q21.11	NCBI
HuRef	8	70,394,473 - 70,432,211 (+)	NCBI		HuRef
CHM1_1	8	74,955,493 - 74,993,242 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	74,420,655 - 74,529,114 (+)	NCBI		T2T-CHM13v2.0

Ly96
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	16,758,680 - 16,779,829 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	16,758,275 - 16,779,835 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	16,688,456 - 16,709,605 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	16,688,051 - 16,709,611 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	16,678,537 - 16,699,686 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	16,673,670 - 16,694,819 (+)	NCBI		MGSCv36	mm8
Celera	1	16,621,307 - 16,642,544 (+)	NCBI		Celera
Cytogenetic Map	1	A3	NCBI
cM Map	1	5.1	NCBI

Ly96
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955444	6,356,154 - 6,387,529 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955444	6,356,121 - 6,387,350 (-)	NCBI	ChiLan1.0	ChiLan1.0

LY96
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	89,734,070 - 89,780,203 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	65,362,059 - 65,408,612 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	70,525,058 - 70,567,839 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	72,169,986 - 72,207,380 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	72,169,986 - 72,207,372 (+)	Ensembl	panpan1.1		panPan2

LY96
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	22,493,757 - 22,515,147 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	22,493,896 - 22,515,117 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	22,758,770 - 22,780,161 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	22,604,586 - 22,625,987 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	22,604,724 - 22,625,957 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	22,663,372 - 22,684,762 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	22,698,527 - 22,719,904 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	22,981,883 - 23,003,258 (+)	NCBI		UU_Cfam_GSD_1.0

Ly96
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	56,777,115 - 56,795,405 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936648	2,653,252 - 2,671,453 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LY96
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	61,926,064 - 61,950,697 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	61,919,806 - 61,950,712 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	67,631,664 - 67,656,017 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LY96
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	69,591,885 - 69,629,939 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	69,591,941 - 69,630,274 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	71,667,502 - 71,779,874 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ly96
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	17,208,990 - 17,241,347 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624744	17,209,285 - 17,241,347 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ly96
117 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	7
Count of miRNA genes:	7
Interacting mature miRNAs:	7
Transcripts:	ENSRNOT00000062050
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	2138965	32656739	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
631551	Vetf1	Vascular elastic tissue fragility QTL 1	5	0.0001	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	5	2282226	5904428	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat

Markers in Region

RH134630

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	2,637,816 - 2,638,009 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	2,020,567 - 2,020,759	NCBI	Rnor6.0
Rnor_5.0	5	2,020,235 - 2,020,427	UniSTS	Rnor5.0
RGSC_v3.4	5	2,007,241 - 2,007,433	UniSTS	RGSC3.4
Celera	5	2,259,617 - 2,259,809	UniSTS
Cytogenetic Map	5	q11	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY197554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY963291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU929066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000106635 ⟹ ENSRNOP00000088425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	2,582,254 - 2,612,386 (-)	Ensembl

RefSeq Acc Id:

NM_001024279 ⟹ NP_001019450

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	7,366,022 - 7,395,654 (-)	NCBI
mRatBN7.2	5	2,582,721 - 2,612,357 (-)	NCBI

RefSeq Acc Id:

XM_039110517 ⟹ XP_038966445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	7,365,536 - 7,395,403 (-)	NCBI
mRatBN7.2	5	2,582,233 - 2,612,102 (-)	NCBI

RefSeq Acc Id:

XM_063288158 ⟹ XP_063144228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	7,365,536 - 7,397,864 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019450	(Get FASTA)	NCBI Sequence Viewer
	XP_038966445	(Get FASTA)	NCBI Sequence Viewer
	XP_063144228	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAO62343	(Get FASTA)	NCBI Sequence Viewer
	AAX73194	(Get FASTA)	NCBI Sequence Viewer
	ACI15386	(Get FASTA)	NCBI Sequence Viewer
	EDM11490	(Get FASTA)	NCBI Sequence Viewer
	EDM11491	(Get FASTA)	NCBI Sequence Viewer
	EDM11492	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000088425
	ENSRNOP00000088425.1

RefSeq Acc Id:	XP_038966445 ⟸ XM_039110517
- Peptide Label:	isoform X2
- UniProtKB:	A6JF95 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001019450 ⟸ NM_001024279
- Peptide Label:	precursor
- UniProtKB:	Q56DL5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000088425 ⟸ ENSRNOT00000106635

RefSeq Acc Id:	XP_063144228 ⟸ XM_063288158
- Peptide Label:	isoform X1
- UniProtKB:	Q56DL5 (UniProtKB/TrEMBL)

Protein Domains

MD-2-related lipid-recognition

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1302993	AgrOrtholog
BioCyc Gene	G2FUF-42315	BioCyc
Ensembl Genes	ENSRNOG00000067966	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000106635	ENTREZGENE
	ENSRNOT00000106635.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.770	UniProtKB/TrEMBL
InterPro	Ig_E-set	UniProtKB/TrEMBL
	LY96	UniProtKB/TrEMBL
	MD-2_lipid-recog	UniProtKB/TrEMBL
KEGG Report	rno:448830	UniProtKB/TrEMBL
NCBI Gene	448830	ENTREZGENE
PANTHER	LYMPHOCYTE ANTIGEN 96	UniProtKB/TrEMBL
	PTHR15218	UniProtKB/TrEMBL
Pfam	E1_DerP2_DerF2	UniProtKB/TrEMBL
PhenoGen	Ly96	PhenoGen
RatGTEx	ENSRNOG00000067966	RatGTEx
SMART	SM00737	UniProtKB/TrEMBL
Superfamily-SCOP	Ig_E-set	UniProtKB/TrEMBL
UniProt	A6JF94_RAT	UniProtKB/TrEMBL
	A6JF95	ENTREZGENE, UniProtKB/TrEMBL
	A6JF96_RAT	UniProtKB/TrEMBL
	Q56DL5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-28	Ly96				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)