Slc22a1 (solute carrier family 22 member 1) - Rat Genome Database

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Gene: Slc22a1 (solute carrier family 22 member 1) Rattus norvegicus
Analyze
Symbol: Slc22a1
Name: solute carrier family 22 member 1
RGD ID: 3224
Description: Enables several functions, including dopamine:sodium symporter activity; identical protein binding activity; and organic cation transmembrane transporter activity. Involved in several processes, including metanephric proximal tubule development; monoamine transport; and monoatomic ion transmembrane transport. Located in apical plasma membrane and basolateral plasma membrane. Used to study acute kidney failure. Biomarker of asthma; extrahepatic cholestasis; and intrahepatic cholestasis. Orthologous to human SLC22A1 (solute carrier family 22 member 1); PARTICIPATES IN lamivudine pharmacokinetics pathway; metformin pharmacokinetics pathway; tramadol pharmacokinetics pathway; INTERACTS WITH (+)-schisandrin B; (R)-carnitine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC93570; Oct1; Orct1; organic cation transporter; organic cation transporter 1; Roct1; solute carrier family 22 (organic cation transporter), member 1; solute carrier family 22, member 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: Slc22a1em1Sage  
Genetic Models: SD-Slc22a1em1Sage
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,624,339 - 50,651,437 (+)NCBIGRCr8
mRatBN7.2148,076,657 - 48,103,679 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl148,076,666 - 48,103,678 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,768,287 - 48,795,288 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,754,091 - 54,781,071 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,843,810 - 48,870,799 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0148,273,639 - 48,300,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl148,273,611 - 48,300,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,452,604 - 51,479,610 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,351,239 - 42,378,295 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,354,183 - 42,381,239 (+)NCBI
Celera143,876,335 - 43,903,290 (+)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
Slc22a1Ratacute kidney failure treatmentIDA 7243179 RGD 
Slc22a1Ratasthma  IEP 5686690 RGD 
Slc22a1RatEndotoxemia treatmentIDA 7243881 RGD 
Slc22a1RatExperimental Diabetes Mellitus  IDA 2317435 RGD 
Slc22a1Ratextrahepatic cholestasis  IEP 7243879protein:decreased expression:kidneyRGD 
Slc22a1Rathyperuricemia treatmentISOSlc22a1 (Mus musculus)7244192 RGD 
Slc22a1Rathyperuricemia treatmentISOSlc22a1 (Mus musculus)7243180 RGD 
Slc22a1Ratintrahepatic cholestasis  IEP 7243885mRNA and protein:decreased expression:liverRGD 
Slc22a1RatKidney Neoplasms  ISOSlc22a1 (Mus musculus)7243178mRNA:decreased expression:kidneyRGD 
Slc22a1RatKidney Reperfusion Injury  IEP 7243877 RGD 
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Original Reference(s)
Slc22a1Rat3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome  ISOSLC22A1 (Homo sapiens)8554872ClinVar Annotator: match by term: 3-methylglutaconic aciduria with deafness more ...ClinVarPMID:15220921 more ...
Slc22a1RatHirschsprung's disease  ISOSLC22A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Aganglionic megacolonClinVar 
Object Symbol
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Original Reference(s)
Slc22a1RatColonic Neoplasms  ISOSLC22A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15059925
Slc22a1Rathepatocellular carcinoma  ISOSLC22A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28284560
Slc22a1Ratobesity  ISOSLC22A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20956498

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Original Reference(s)
Slc22a1Rat(+)-artemisinin multiple interactionsISOSLC22A1 (Homo sapiens)6480464artemisinin inhibits the reaction [SLC22A1 protein results in increased uptake of 1-Methyl-4-phenylpyridinium]CTDPMID:27504015
Slc22a1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of SLC22A1 mRNA]CTDPMID:31150632
Slc22a1Rat(1->4)-beta-D-glucan multiple interactionsISOSlc22a1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SLC22A1 mRNACTDPMID:36331819
Slc22a1Rat(R)-carnitine decreases expressionEXP 6480464Carnitine results in decreased expression of SLC22A1 proteinCTDPMID:25669660
Slc22a1Rat(S)-nicotine multiple interactionsISOSLC22A1 (Homo sapiens)6480464Nicotine inhibits the reaction [SLC22A1 protein results in increased import of Tetraethylammonium]CTDPMID:27450509
Slc22a1Rat1,1'-diethyl-2,2'-cyanine multiple interactionsISOSLC22A1 (Homo sapiens)6480464pseudoisocyanine affects the reaction [SLC22A1 protein results in increased uptake of 1-Methyl-4-phenylpyridinium] and pseudoisocyanine inhibits the reaction [SLC22A1 protein results in increased uptake of 1-Methyl-4-phenylpyridinium]CTDPMID:11388889 and PMID:12110607
Slc22a1Rat1,1'-diethyl-2,2'-cyanine decreases activityISOSLC22A1 (Homo sapiens)6480464pseudoisocyanine results in decreased activity of SLC22A1 proteinCTDPMID:12110607
Slc22a1Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane decreases expressionISOSLC22A1 (Homo sapiens)6480464o and p'-DDT results in decreased expression of SLC22A1 mRNACTDPMID:24464585
Slc22a1Rat1,1-dichloroethene decreases expressionISOSlc22a1 (Mus musculus)6480464vinylidene chloride results in decreased expression of SLC22A1 mRNACTDPMID:26682919
Slc22a1Rat1,2-dimethylhydrazine multiple interactionsISOSlc22a1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SLC22A1 mRNACTDPMID:22206623
Slc22a1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine increases response to substanceISOSlc22a1 (Mus musculus)6480464SLC22A1 protein results in increased susceptibility to 1-Methyl-4-phenyl-1 more ...CTDPMID:25248837
Slc22a1Rat1-methylnicotinamide increases importISOSLC22A1 (Homo sapiens)6480464SLC22A1 results in increased import of N(1)-methylnicotinamideCTDPMID:9260930
Slc22a1Rat1-naphthyl isothiocyanate decreases expressionISOSlc22a1 (Mus musculus)64804641-Naphthylisothiocyanate results in decreased expression of SLC22A1 mRNACTDPMID:15913567
Slc22a1Rat17alpha-ethynylestradiol multiple interactionsISOSlc22a1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of SLC22A1 mRNACTDPMID:17942748
Slc22a1Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of SLC22A1 mRNA and Ethinyl Estradiol results in decreased expression of SLC22A1 proteinCTDPMID:17108234 and PMID:19002567
Slc22a1Rat17beta-estradiol decreases expressionISOSLC22A1 (Homo sapiens)6480464Estradiol results in decreased expression of SLC22A1 mRNACTDPMID:20106945
Slc22a1Rat17beta-estradiol decreases activityISOSLC22A1 (Homo sapiens)6480464Estradiol results in decreased activity of SLC22A1 proteinCTDPMID:12110607
Slc22a1Rat17beta-estradiol multiple interactionsISOSLC22A1 (Homo sapiens)6480464Estradiol inhibits the reaction [SLC22A1 protein results in increased uptake of 1-Methyl-4-phenylpyridinium]CTDPMID:12110607
Slc22a1Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642 more ...CTDPMID:31826744 and PMID:32679240
Slc22a1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSlc22a1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of SLC22A1 mRNACTDPMID:17942748

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Biological Process
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Original Reference(s)
Slc22a1Rat(R)-carnitine transmembrane transport involved_inISOSlc22a1 (Mus musculus)1624291 PMID:28942964 and PMID:34040533RGDPMID:28942964 and PMID:34040533
Slc22a1Rat(R)-carnitine transmembrane transport involved_inISSUniProtKB:O089661600115GO_REF:0000024UniProtGO_REF:0000024
Slc22a1Ratacetylcholine transport involved_inIDA 2317432PMID:15817714UniProt 
Slc22a1Ratacetylcholine transport involved_inISOSLC22A1 (Homo sapiens)1624291 PMID:15817714RGDPMID:15817714
Slc22a1Ratcellular detoxification involved_inISOSlc22a1 (Mus musculus)1624291 PMID:20477935RGDPMID:20477935
Slc22a1Ratcellular detoxification involved_inISOSLC22A1 (Homo sapiens)1624291 PMID:20477935 more ...RGDPMID:20477935 more ...
Slc22a1Ratcellular detoxification involved_inIMP 30309941PMID:20477935ARUK-UCL 
Slc22a1Ratdopamine transport  IDA 1643122 RGD 
Slc22a1Ratdopamine transport involved_inISOSlc22a1 (Mus musculus)1624291 PMID:35469921RGDPMID:35469921
Slc22a1Ratdopamine transport involved_inISOSLC22A1 (Homo sapiens)1624291 PMID:35469921RGDPMID:35469921
Slc22a1Ratdopamine transport involved_inIDA 155663558PMID:16581093UniProt 
Slc22a1Ratdopamine uptake involved_inISOSLC22A1 (Homo sapiens)1624291 PMID:24688079RGDPMID:24688079
Slc22a1Ratepinephrine transport  IDA 1643122 RGD 
Slc22a1Ratepinephrine transport involved_inISOSlc22a1 (Mus musculus)1624291 PMID:35469921RGDPMID:35469921
Slc22a1Ratepinephrine transport involved_inISOSLC22A1 (Homo sapiens)1624291 PMID:35469921RGDPMID:35469921
Slc22a1Ratepinephrine transport involved_inIDA 155663558PMID:16581093UniProt 
Slc22a1Ratestablishment or maintenance of transmembrane electrochemical gradient  IDA 2317432 RGD 
Slc22a1Ratmetanephric proximal tubule development  IEP 155631307 RGD 
Slc22a1Ratmonoamine transport  IDA 1643122tyramineRGD 
Slc22a1Ratmonoamine transport involved_inISOSLC22A1 (Homo sapiens)1624291 PMID:35469921RGDPMID:35469921
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Cellular Component
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Original Reference(s)
Slc22a1Ratapical plasma membrane located_inISOSlc22a1 (Mus musculus)1624291 PMID:20477935 and PMID:23680637RGDPMID:20477935 and PMID:23680637
Slc22a1Ratapical plasma membrane located_inIDA 30309941PMID:20477935ARUK-UCL 
Slc22a1Ratapical plasma membrane located_inIDA 2317432PMID:15817714UniProt 
Slc22a1Ratapical plasma membrane located_inISOSLC22A1 (Homo sapiens)1624291 PMID:15817714 more ...RGDPMID:15817714 more ...
Slc22a1Ratapical plasma membrane located_inISSUniProtKB:O152451600115GO_REF:0000024UniProtGO_REF:0000024
Slc22a1Ratbasal plasma membrane located_inISOSLC22A1 (Homo sapiens)1624291 PMID:35307651RGDPMID:35307651
Slc22a1Ratbasolateral plasma membrane  IDA 1643124renal proximal tubulesRGD 
Slc22a1Ratbasolateral plasma membrane located_inISOSlc22a1 (Mus musculus)1624291 PMID:28942964RGDPMID:28942964
Slc22a1Ratbasolateral plasma membrane located_inISOSLC22A1 (Homo sapiens)1624291 PMID:12719534RGDPMID:12719534
Slc22a1Ratbasolateral plasma membrane located_inIDA 634159PMID:7990927UniProt 
Slc22a1Ratbasolateral plasma membrane located_inIDA 155663544PMID:11083459UniProt 
Slc22a1Ratbasolateral plasma membrane located_inIDA 155663550PMID:9703985UniProt 
Slc22a1Ratbasolateral plasma membrane located_inIDA 1643123PMID:9808712UniProt 
Slc22a1Ratbasolateral plasma membrane located_inIDA 1643124PMID:10997918UniProt 
Slc22a1Ratbasolateral plasma membrane  IDA 1643123 RGD 
Slc22a1Ratlateral plasma membrane located_inISSUniProtKB:O152451600115GO_REF:0000024UniProtGO_REF:0000024
Slc22a1Ratlateral plasma membrane located_inISOSLC22A1 (Homo sapiens)1624291 PMID:16263091RGDPMID:16263091
Slc22a1Ratplasma membrane located_inIDA 8553962PMID:12176030MGI 
Slc22a1Ratpresynapse located_inIEAGO:00516101600115GO_REF:0000108GOCGO_REF:0000108
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Molecular Function
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Original Reference(s)
Slc22a1Rat(R)-carnitine transmembrane transporter activity enablesISOSlc22a1 (Mus musculus)1624291 PMID:28942964 and PMID:34040533RGDPMID:28942964 and PMID:34040533
Slc22a1Rat(R)-carnitine transmembrane transporter activity enablesISSUniProtKB:O089661600115GO_REF:0000024UniProtGO_REF:0000024
Slc22a1Ratacetylcholine transmembrane transporter activity  IDA 2317432 RGD 
Slc22a1Ratacetylcholine transmembrane transporter activity enablesIDA 2317432PMID:15817714UniProt 
Slc22a1Ratacetylcholine transmembrane transporter activity enablesISOSLC22A1 (Homo sapiens)1624291 PMID:15817714RGDPMID:15817714
Slc22a1Ratdopamine:sodium symporter activity  IDA 1643122 RGD 
Slc22a1Ratidentical protein binding  IPISlc22a1 (Rattus norvegicus)7243886homodimerization and homooligomerizationRGD 
Slc22a1Ratidentical protein binding enablesIPIUniProtKB:Q630898554312PMID:21896487IntAct 
Slc22a1Ratmonoamine transmembrane transporter activity  IDA 1643122tyramineRGD 
Slc22a1Ratmonoamine transmembrane transporter activity enablesISOSlc22a1 (Mus musculus)1624291 PMID:24961373 and PMID:35469921RGDPMID:24961373 and PMID:35469921
Slc22a1Ratmonoamine transmembrane transporter activity enablesISOSLC22A1 (Homo sapiens)1624291 PMID:12439218 more ...RGDPMID:12439218 more ...
Slc22a1Ratmonoamine transmembrane transporter activity enablesIDA 155663532PMID:15662044UniProt 
Slc22a1Ratmonoamine transmembrane transporter activity enablesIDA 155663521PMID:10570053UniProt 
Slc22a1Ratmonoamine transmembrane transporter activity enablesIDA 155663519PMID:8955087UniProt 
Slc22a1Ratmonoamine transmembrane transporter activity enablesIDA 155663523PMID:11502595UniProt 
Slc22a1Ratmonoamine transmembrane transporter activity enablesIDA 155663558PMID:16581093UniProt 
Slc22a1Ratneurotransmitter transmembrane transporter activity enablesIDA 155663558PMID:16581093UniProt 
Slc22a1Ratneurotransmitter transmembrane transporter activity enablesISOSlc22a1 (Mus musculus)1624291 PMID:24961373 and PMID:35469921RGDPMID:24961373 and PMID:35469921
Slc22a1Ratneurotransmitter transmembrane transporter activity enablesISOSLC22A1 (Homo sapiens)1624291 PMID:12439218 more ...RGDPMID:12439218 more ...
Slc22a1Ratneurotransmitter transmembrane transporter activity enablesIDA 155663532PMID:15662044UniProt 
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RGD Manual Annotations


  
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Original Reference(s)
Slc22a1Ratmetformin pharmacokinetics pathway   ISOSLC22A1 (Homo sapiens)7794727 RGD 

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
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Original Reference(s)
Slc22a1Ratlamivudine pharmacokinetics pathway  ISOSLC22A1 (Homo sapiens)10402751 SMPDBSMP:00649
Slc22a1Rattramadol pharmacokinetics pathway  ISOSLC22A1 (Homo sapiens)10402751 SMPDBSMP:00637

Imported Annotations - KEGG (archival)

Object Symbol
Species
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Reference
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Original Reference(s)
Slc22a1Ratbile acid transport pathway  IEA 6907045 KEGGrno:04976

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#
Reference Title
Reference Citation
1. Differential pharmacological in vitro properties of organic cation transporters and regional distribution in rat brain. Amphoux A, etal., Neuropharmacology. 2006 Jun;50(8):941-52. doi: 10.1016/j.neuropharm.2006.01.005. Epub 2006 Mar 31.
2. Interaction of cations, anions, and weak base quinine with rat renal cation transporter rOCT2 compared with rOCT1. Arndt P, etal., Am J Physiol Renal Physiol. 2001 Sep;281(3):F454-68. doi: 10.1152/ajprenal.2001.281.3.F454.
3. Catecholamine transport by the organic cation transporter type 1 (OCT1). Breidert T, etal., Br J Pharmacol. 1998 Sep;125(1):218-24.
4. Electrogenic properties and substrate specificity of the polyspecific rat cation transporter rOCT1. Busch AE, etal., J Biol Chem. 1996 Dec 20;271(51):32599-604. doi: 10.1074/jbc.271.51.32599.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Metformin pathways: pharmacokinetics and pharmacodynamics. Gong L, etal., Pharmacogenet Genomics. 2012 Nov;22(11):820-7. doi: 10.1097/FPC.0b013e3283559b22.
7. Selectivity of the polyspecific cation transporter rOCT1 is changed by mutation of aspartate 475 to glutamate. Gorboulev V, etal., Mol Pharmacol. 1999 Dec;56(6):1254-61. doi: 10.1124/mol.56.6.1254.
8. Reduced expression of organic cation transporters rOCT1 and rOCT2 in experimental diabetes. Grover B, etal., J Pharmacol Exp Ther. 2004 Mar;308(3):949-56. Epub 2004 Jan 8.
9. Drug excretion mediated by a new prototype of polyspecific transporter. Grundemann D, etal., Nature 1994 Dec 8;372(6506):549-52.
10. Nitric oxide down-regulates the expression of organic cation transporters (OCT) 1 and 2 in rat kidney during endotoxemia. Heemskerk S, etal., Eur J Pharmacol. 2008 Apr 28;584(2-3):390-7. doi: 10.1016/j.ejphar.2008.02.006. Epub 2008 Feb 12.
11. Quercetin regulates organic ion transporter and uromodulin expression and improves renal function in hyperuricemic mice. Hu QH, etal., Eur J Nutr. 2012 Aug;51(5):593-606. doi: 10.1007/s00394-011-0243-y. Epub 2011 Sep 10.
12. Reduced antidiabetic effect of metformin and down-regulation of hepatic Oct1 in rats with ethynylestradiol-induced cholestasis. Jin HE, etal., Pharm Res. 2009 Mar;26(3):549-59. doi: 10.1007/s11095-008-9770-5. Epub 2008 Nov 11.
13. Functional characterization of mouse cation transporter mOCT2 compared with mOCT1. Kakehi M, etal., Biochem Biophys Res Commun. 2002 Aug 23;296(3):644-50.
14. Localization of organic cation transporters OCT1 and OCT2 in rat kidney. Karbach U, etal., Am J Physiol Renal Physiol. 2000 Oct;279(4):F679-87.
15. Cell free expression and functional reconstitution of eukaryotic drug transporters. Keller T, etal., Biochemistry. 2008 Apr 15;47(15):4552-64. doi: 10.1021/bi800060w. Epub 2008 Mar 25.
16. The large extracellular loop of organic cation transporter 1 influences substrate affinity and is pivotal for oligomerization. Keller T, etal., J Biol Chem. 2011 Oct 28;286(43):37874-86. doi: 10.1074/jbc.M111.289330. Epub 2011 Sep 6.
17. Elevated systemic elimination of cimetidine in rats with acute biliary obstruction: the role of renal organic cation transporter OCT2. Kurata T, etal., Drug Metab Pharmacokinet. 2010;25(4):328-34.
18. Cellular localization of the organic cation transporters, OCT1 and OCT2, in brain microvessel endothelial cells and its implication for MPTP transport across the blood-brain barrier and MPTP-induced dopaminergic toxicity in rodents. Lin CJ, etal., J Neurochem. 2010 Aug;114(3):717-27. doi: 10.1111/j.1471-4159.2010.06801.x. Epub 2010 May 6.
19. Polyspecific cation transporters mediate luminal release of acetylcholine from bronchial epithelium. Lips KS, etal., Am J Respir Cell Mol Biol. 2005 Jul;33(1):79-88. Epub 2005 Apr 7.
20. Down-regulation of the non-neuronal acetylcholine synthesis and release machinery in acute allergic airway inflammation of rat and mouse. Lips KS, etal., Life Sci. 2007 May 30;80(24-25):2263-9. Epub 2007 Jan 23.
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PMID:15817654   PMID:16142924   PMID:16158334   PMID:17701831   PMID:19141712   PMID:19435783   PMID:20044581   PMID:22808265   PMID:22810231   PMID:23280877   PMID:30409791   PMID:32961667  



Slc22a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,624,339 - 50,651,437 (+)NCBIGRCr8
mRatBN7.2148,076,657 - 48,103,679 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl148,076,666 - 48,103,678 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,768,287 - 48,795,288 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,754,091 - 54,781,071 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,843,810 - 48,870,799 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0148,273,639 - 48,300,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl148,273,611 - 48,300,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,452,604 - 51,479,610 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,351,239 - 42,378,295 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,354,183 - 42,381,239 (+)NCBI
Celera143,876,335 - 43,903,290 (+)NCBICelera
Cytogenetic Map1q11NCBI
SLC22A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386160,121,815 - 160,158,718 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6160,121,815 - 160,158,718 (+)EnsemblGRCh38hg38GRCh38
GRCh376160,542,847 - 160,579,750 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366160,462,853 - 160,499,740 (+)NCBINCBI36Build 36hg18NCBI36
Build 346160,513,273 - 160,550,159NCBI
Celera6161,188,634 - 161,224,539 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6158,013,550 - 158,049,540 (+)NCBIHuRef
CHM1_16160,805,108 - 160,841,995 (+)NCBICHM1_1
T2T-CHM13v2.06161,367,910 - 161,404,908 (+)NCBIT2T-CHM13v2.0
Slc22a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391712,867,761 - 12,894,725 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1712,867,756 - 12,894,716 (-)EnsemblGRCm39 Ensembl
GRCm381712,648,874 - 12,675,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1712,648,869 - 12,675,829 (-)EnsemblGRCm38mm10GRCm38
MGSCv371712,841,740 - 12,868,704 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361712,492,232 - 12,519,196 (-)NCBIMGSCv36mm8
Celera1712,680,587 - 12,707,864 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map178.63NCBI
SLC22A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25180,216,337 - 180,263,051 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16178,125,295 - 178,169,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06158,004,545 - 158,046,428 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16163,014,522 - 163,054,818 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6163,014,663 - 163,054,681 (+)Ensemblpanpan1.1panPan2
SLC22A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1149,268,978 - 49,296,522 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha150,109,085 - 50,138,635 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0149,451,887 - 49,481,466 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl149,451,182 - 49,482,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1149,334,247 - 49,363,803 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0149,205,883 - 49,235,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0149,820,796 - 49,850,348 (+)NCBIUU_Cfam_GSD_1.0
Slc22a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946144,281,749 - 144,305,075 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648911,534,095 - 11,556,745 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648911,534,095 - 11,556,759 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17,340,126 - 7,365,520 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.117,340,442 - 7,365,543 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.219,139,435 - 9,164,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11387,744,600 - 87,780,846 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1387,745,023 - 87,781,073 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604060,132,123 - 60,167,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in Slc22a1
100 total Variants

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:89
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000022068, ENSRNOT00000022254
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat

1 to 10 of 45 rows

This gene Slc22a1 is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 70 89 88 57 24 57 6 213 94 50 45 54 31



Ensembl Acc Id: ENSRNOT00000022068   ⟹   ENSRNOP00000022068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl148,076,688 - 48,103,678 (+)Ensembl
Rnor_6.0 Ensembl148,273,639 - 48,300,495 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000022254   ⟹   ENSRNOP00000022254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl148,076,666 - 48,103,678 (+)Ensembl
Rnor_6.0 Ensembl148,273,611 - 48,300,655 (+)Ensembl
RefSeq Acc Id: NM_012697   ⟹   NP_036829
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,624,430 - 50,651,437 (+)NCBI
mRatBN7.2148,076,666 - 48,103,679 (+)NCBI
Rnor_6.0148,273,639 - 48,300,645 (+)NCBI
Rnor_5.0151,452,604 - 51,479,610 (-)NCBI
RGSC_v3.4142,351,239 - 42,378,295 (+)RGD
Celera143,876,335 - 43,903,290 (+)RGD
Sequence:
RefSeq Acc Id: XM_039101083   ⟹   XP_038957011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,624,339 - 50,651,437 (+)NCBI
mRatBN7.2148,076,657 - 48,103,679 (+)NCBI
RefSeq Acc Id: XM_039101089   ⟹   XP_038957017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,633,142 - 50,651,437 (+)NCBI
mRatBN7.2148,085,370 - 48,103,679 (+)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_036829 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957011 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957017 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB67702 (Get FASTA)   NCBI Sequence Viewer  
  AAH78883 (Get FASTA)   NCBI Sequence Viewer  
  CAA55411 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022068.3
  ENSRNOP00000022254.2
GenBank Protein Q63089 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_036829   ⟸   NM_012697
- UniProtKB: O35882 (UniProtKB/Swiss-Prot),   Q6AYW1 (UniProtKB/Swiss-Prot),   Q63089 (UniProtKB/Swiss-Prot),   A6KJW8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022068   ⟸   ENSRNOT00000022068
Ensembl Acc Id: ENSRNOP00000022254   ⟸   ENSRNOT00000022254
RefSeq Acc Id: XP_038957011   ⟸   XM_039101083
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957017   ⟸   XM_039101089
- Peptide Label: isoform X2
Name Modeler Protein Id AA Range Protein Structure
AF-Q63089-F1-model_v2 AlphaFold Q63089 1-556 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689619
Promoter ID:EPDNEW_R143
Type:initiation region
Name:Slc22a1_1
Description:solute carrier family 22 member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0148,273,628 - 48,273,688EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-61571 BioCyc
Ensembl Genes ENSRNOG00000016337 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022068.6 UniProtKB/Swiss-Prot
  ENSRNOT00000022254.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7130305 IMAGE-MGC_LOAD
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orgcat_transp/SVOP UniProtKB/Swiss-Prot
  Sugar_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24904 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93570 IMAGE-MGC_LOAD
NCBI Gene 24904 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
  Sugar_tr UniProtKB/Swiss-Prot
PharmGKB SLC22A1 RGD
PhenoGen Slc22a1 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016337 RatGTEx
Superfamily-SCOP MFS general substrate transporter UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
TIGR TC230941
UniProt A6KJW8 ENTREZGENE, UniProtKB/TrEMBL
  O35882 ENTREZGENE
  Q63089 ENTREZGENE
  Q6AYW1 ENTREZGENE
  S22A1_RAT UniProtKB/Swiss-Prot
UniProt Secondary O35882 UniProtKB/Swiss-Prot
  Q6AYW1 UniProtKB/Swiss-Prot
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Slc22a1  solute carrier family 22 member 1  Slc22a1  solute carrier family 22 (organic cation transporter), member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Slc22a1  solute carrier family 22 (organic cation transporter), member 1    solute carrier family 22, member 1  Name updated 1299863 APPROVED
2003-04-09 Slc22a1  solute carrier family 22, member 1    Solute carrier family 22, member 1  Name updated 629478 APPROVED
2001-06-22 1-Oct  Organic cation transporter      Symbol and Name withdrawn 67952 WITHDRAWN
2001-06-22 Slc22a1  Solute carrier family 22, member 1      Symbol and Name updated to reflect Human and Mouse nomenclature 67952 APPROVED

Note Type Note Reference
gene_function translocates hydrophobic and hydrophilic organic cations 634159
gene_protein 556-amino-acid membrane protein 634159