Tmtc1 (transmembrane O-mannosyltransferase targeting cadherins 1) - Rat Genome Database

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Gene: Tmtc1 (transmembrane O-mannosyltransferase targeting cadherins 1) Rattus norvegicus
Analyze
Symbol: Tmtc1
Name: transmembrane O-mannosyltransferase targeting cadherins 1
RGD ID: 1564868
Description: Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be located in endoplasmic reticulum and membrane. Orthologous to human TMTC1 (transmembrane O-mannosyltransferase targeting cadherins 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362465; RGD1564868; similar to ARG99 homolog; transmembrane and tetratricopeptide repeat containing 1; transmembrane and TPR repeat-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84182,874,350 - 183,089,408 (-)NCBIGRCr8
mRatBN7.24181,142,937 - 181,357,979 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,146,251 - 181,359,289 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04182,620,132 - 182,845,620 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4182,625,386 - 182,844,291 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04246,754,566 - 246,980,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44185,853,778 - 186,069,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4169,634,339 - 169,841,680 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmtc1RatCOVID-19  ISOTMTC1 (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744

1 to 20 of 100 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmtc1Rat(-)-epigallocatechin 3-gallate multiple interactionsISOTMTC1 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of TMTC1 mRNACTDPMID:22079256
Tmtc1Rat1,1-dichloroethene decreases expressionISOTmtc1 (Mus musculus)6480464vinylidene chloride results in decreased expression of TMTC1 mRNACTDPMID:26682919
Tmtc1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of TMTC1 mRNACTDPMID:29097150
Tmtc1Rat17beta-estradiol decreases expressionISOTMTC1 (Homo sapiens)6480464Estradiol results in decreased expression of TMTC1 mRNACTDPMID:23019147
Tmtc1Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of TMTC1 mRNACTDPMID:26496021
Tmtc1Rat17beta-estradiol multiple interactionsISOTMTC1 (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in increased expression of TMTC1 mRNACTDPMID:20660070
Tmtc1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOTmtc1 (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to TMTC1 promoter]CTDPMID:19654925
Tmtc1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of TMTC1 mRNACTDPMID:33387578
Tmtc1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of TMTC1 mRNACTDPMID:32109520
Tmtc1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of TMTC1 mRNACTDPMID:22298810
Tmtc1Rat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
Tmtc1Rat2-hydroxybenzoic acid (3,3,5-trimethylcyclohexyl) ester multiple interactionsISOTMTC1 (Homo sapiens)6480464Polystyrenes promotes the reaction [homosalate results in increased expression of TMTC1 mRNA]CTDPMID:38381479
Tmtc1Rat2-hydroxybenzoic acid (3,3,5-trimethylcyclohexyl) ester increases expressionISOTMTC1 (Homo sapiens)6480464homosalate results in increased expression of TMTC1 mRNACTDPMID:38381479
Tmtc1Rat2-hydroxypropanoic acid decreases expressionISOTMTC1 (Homo sapiens)6480464Lactic Acid results in decreased expression of TMTC1 mRNACTDPMID:30851411
Tmtc1Rat3,4-methylenedioxymethamphetamine decreases expressionISOTmtc1 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of TMTC1 mRNACTDPMID:26251327
Tmtc1Rat3,4-methylenedioxymethamphetamine increases expressionEXP 6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of TMTC1 mRNACTDPMID:30071829
Tmtc1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOTMTC1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of TMTC1 mRNACTDPMID:28628672
Tmtc1Rat4,4'-sulfonyldiphenol increases methylationISOTMTC1 (Homo sapiens)6480464bisphenol S results in increased methylation of TMTC1 geneCTDPMID:31601247
Tmtc1Rat4-hydroxyphenyl retinamide decreases expressionISOTmtc1 (Mus musculus)6480464Fenretinide results in decreased expression of TMTC1 mRNACTDPMID:28973697
Tmtc1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of TMTC1 mRNACTDPMID:24780913 and PMID:25825206

1 to 20 of 100 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmtc1Ratprotein glycosylation involved_inIEAUniPathway:UPA003781600115GO_REF:0000041UniProtGO_REF:0000041
Tmtc1Ratprotein O-linked mannosylation involved_inISOTMTC1 (Homo sapiens)1624291 PMID:28973932RGDPMID:28973932
Tmtc1Ratprotein O-linked mannosylation involved_inIBAPANTHER:PTN002894163 and UniProtKB:Q8IUR51600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmtc1Ratendoplasmic reticulum located_inIEAUniProtKB-SubCell:SL-00951600115GO_REF:0000044UniProtGO_REF:0000044
Tmtc1Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Tmtc1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Tmtc1Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:18614015   PMID:28973932  



Tmtc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84182,874,350 - 183,089,408 (-)NCBIGRCr8
mRatBN7.24181,142,937 - 181,357,979 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,146,251 - 181,359,289 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04182,620,132 - 182,845,620 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4182,625,386 - 182,844,291 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04246,754,566 - 246,980,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44185,853,778 - 186,069,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4169,634,339 - 169,841,680 (-)NCBICelera
Cytogenetic Map4q44NCBI
TMTC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381229,500,813 - 29,784,759 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1229,500,840 - 29,784,759 (-)EnsemblGRCh38hg38GRCh38
GRCh371229,653,746 - 29,937,692 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361229,545,024 - 29,828,959 (-)NCBINCBI36Build 36hg18NCBI36
Celera1234,799,099 - 35,083,077 (-)NCBICelera
Cytogenetic Map12p11.22NCBI
HuRef1229,422,040 - 29,706,478 (-)NCBIHuRef
CHM1_11229,618,952 - 29,902,841 (-)NCBICHM1_1
T2T-CHM13v2.01229,372,944 - 29,656,989 (-)NCBIT2T-CHM13v2.0
Tmtc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,133,928 - 148,346,222 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,133,928 - 148,345,887 (-)EnsemblGRCm39 Ensembl
GRCm386148,232,430 - 148,444,770 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,232,430 - 148,444,389 (-)EnsemblGRCm38mm10GRCm38
MGSCv376148,180,952 - 148,392,874 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366148,193,842 - 148,401,522 (-)NCBIMGSCv36mm8
Celera6151,264,572 - 151,479,660 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.49NCBI
Tmtc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555055,226,550 - 5,449,117 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555055,200,900 - 5,454,785 (+)NCBIChiLan1.0ChiLan1.0
TMTC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21067,019,537 - 67,302,439 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11267,015,260 - 67,303,984 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01256,517,067 - 56,805,872 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11259,145,232 - 59,430,255 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1259,145,228 - 59,424,231 (+)Ensemblpanpan1.1panPan2
TMTC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12718,252,642 - 18,519,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2718,191,118 - 18,518,974 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2727,890,260 - 28,157,025 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02718,440,404 - 18,710,374 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2718,440,180 - 18,705,879 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12718,253,883 - 18,519,964 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02718,279,905 - 18,549,299 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02728,042,107 - 28,312,102 (-)NCBIUU_Cfam_GSD_1.0
Tmtc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494580,126,963 - 80,380,197 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367601,558,997 - 1,806,386 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367601,558,776 - 1,807,216 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMTC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl543,913,693 - 44,218,049 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1543,913,710 - 44,222,899 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2547,514,487 - 47,533,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMTC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11129,207,946 - 29,494,691 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1129,213,956 - 29,493,489 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660695,537,900 - 5,824,854 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmtc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247785,961,692 - 6,208,993 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247785,961,700 - 6,211,525 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Tmtc1
1507 total Variants

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:87
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000002535, ENSRNOT00000064320
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat

1 to 9 of 9 rows
D4Got156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24181,192,162 - 181,192,354 (+)MAPPERmRatBN7.2
Rnor_6.04182,668,008 - 182,668,199NCBIRnor6.0
Rnor_5.04246,802,436 - 246,802,627UniSTSRnor5.0
RGSC_v3.44185,900,256 - 185,900,447RGDRGSC3.4
RGSC_v3.44185,900,256 - 185,900,447UniSTSRGSC3.4
RGSC_v3.14186,145,380 - 186,145,571RGD
Celera4169,677,483 - 169,677,674UniSTS
RH 3.4 Map41125.62RGD
RH 3.4 Map41125.62UniSTS
RH 2.0 Map41159.0RGD
Cytogenetic Map4q44UniSTS
RH130651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24181,287,548 - 181,287,734 (+)MAPPERmRatBN7.2
Rnor_6.04182,768,410 - 182,768,595NCBIRnor6.0
Rnor_5.04246,903,053 - 246,903,238UniSTSRnor5.0
RGSC_v3.44185,996,108 - 185,996,293UniSTSRGSC3.4
Celera4169,772,583 - 169,772,768UniSTS
RH 3.4 Map41119.1UniSTS
Cytogenetic Map4q44UniSTS
BF402097  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24181,179,816 - 181,179,989 (+)MAPPERmRatBN7.2
Rnor_6.04182,655,662 - 182,655,834NCBIRnor6.0
Rnor_5.04246,790,090 - 246,790,262UniSTSRnor5.0
RGSC_v3.44185,887,910 - 185,888,082UniSTSRGSC3.4
Celera4169,665,136 - 169,665,308UniSTS
RH 3.4 Map41102.8UniSTS
Cytogenetic Map4q44UniSTS
AI104090  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24181,270,223 - 181,270,369 (+)MAPPERmRatBN7.2
Rnor_6.04182,746,165 - 182,746,310NCBIRnor6.0
Rnor_5.04246,880,519 - 246,880,664UniSTSRnor5.0
RGSC_v3.44185,978,112 - 185,978,257UniSTSRGSC3.4
Celera4169,755,259 - 169,755,404UniSTS
RH 3.4 Map2055.73UniSTS
Cytogenetic Map4q44UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000064320   ⟹   ENSRNOP00000061944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4181,146,251 - 181,359,289 (-)Ensembl
Rnor_6.0 Ensembl4182,625,386 - 182,844,291 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114970   ⟹   ENSRNOP00000084348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4181,146,251 - 181,359,289 (-)Ensembl
RefSeq Acc Id: XM_039108899   ⟹   XP_038964827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84182,874,350 - 183,089,408 (-)NCBI
mRatBN7.24181,142,937 - 181,357,979 (-)NCBI
RefSeq Acc Id: XM_039108900   ⟹   XP_038964828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84182,874,350 - 183,089,408 (-)NCBI
mRatBN7.24181,142,937 - 181,357,979 (-)NCBI
RefSeq Acc Id: XM_039108901   ⟹   XP_038964829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84182,891,331 - 183,089,408 (-)NCBI
mRatBN7.24181,160,490 - 181,357,979 (-)NCBI
RefSeq Acc Id: XM_039108902   ⟹   XP_038964830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84182,933,766 - 183,089,408 (-)NCBI
mRatBN7.24181,202,356 - 181,357,979 (-)NCBI
RefSeq Acc Id: XM_063286869   ⟹   XP_063142939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84182,884,545 - 183,089,408 (-)NCBI
RefSeq Acc Id: XM_063286870   ⟹   XP_063142940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84182,874,350 - 183,089,372 (-)NCBI
Ensembl Acc Id: ENSRNOP00000061944   ⟸   ENSRNOT00000064320
RefSeq Acc Id: XP_038964828   ⟸   XM_039108900
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZZ24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964827   ⟸   XM_039108899
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038964829   ⟸   XM_039108901
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038964830   ⟸   XM_039108902
- Peptide Label: isoform X6
DUF1736

Name Modeler Protein Id AA Range Protein Structure
AF-D4A2M3-F1-model_v2 AlphaFold D4A2M3 1-880 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 33 of 33 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-42402 BioCyc
BioCyc Pathway PWY-7922 [protein O-mannosylation II (mammals, core M1 and core M2)] BioCyc
  PWY-7979 [protein O-mannosylation III (mammals, core M3)] BioCyc
BioCyc Pathway Image PWY-7922 BioCyc
  PWY-7979 BioCyc
Ensembl Genes ENSRNOG00000001854 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064320.5 UniProtKB/TrEMBL
  ENSRNOT00000114970 ENTREZGENE
  ENSRNOT00000114970.1 UniProtKB/TrEMBL
  ENSRNOT00000144032 ENTREZGENE
  ENSRNOT00000158656 ENTREZGENE
  ENSRNOT00000160308 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro DUF1736 UniProtKB/TrEMBL
  TMTC_O-mannosyl-trnsfr UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene 362465 ENTREZGENE
PANTHER PROTEIN O-MANNOSYL-TRANSFERASE TMTC1 UniProtKB/TrEMBL
  PTHR44809 UniProtKB/TrEMBL
Pfam DUF1736 UniProtKB/TrEMBL
  TPR_11 UniProtKB/TrEMBL
  TPR_12 UniProtKB/TrEMBL
  TPR_16 UniProtKB/TrEMBL
  TPR_19 UniProtKB/TrEMBL
PhenoGen Tmtc1 PhenoGen
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001854 RatGTEx
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8I5ZZ24 ENTREZGENE, UniProtKB/TrEMBL
  D4A2M3 ENTREZGENE, UniProtKB/TrEMBL
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Tmtc1  transmembrane O-mannosyltransferase targeting cadherins 1  Tmtc1  transmembrane and tetratricopeptide repeat containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Tmtc1  transmembrane and tetratricopeptide repeat containing 1  RGD1564868_predicted  similar to ARG99 homolog (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564868_predicted  similar to ARG99 homolog (predicted)  LOC362465  similar to ARG99 homolog  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362465  similar to ARG99 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL