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Gene: Usp40 (ubiquitin specific peptidase 40) Rattus norvegicus

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Symbol:

Usp40

Name:

ubiquitin specific peptidase 40

RGD ID:

1309613

Description:

Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in regulation of protein stability. Predicted to be active in cytosol and nucleus. Orthologous to human USP40 (ubiquitin specific peptidase 40); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC100911860; LOC316599; LRRGT00071; sorbitol dehydrogenase-like; ubiquitin carboxyl-terminal hydrolase 40; ubiquitin carboxyl-terminal hydrolase 40-like; ubiquitin specific protease 40; ubiquitin thioesterase 40

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	96,055,741 - 96,126,766 (-)	NCBI		GRCr8
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	97,032,175 - 97,103,042 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	102,168,363 - 102,239,234 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	100,536,129 - 100,607,106 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	95,072,096 - 95,143,092 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	95,072,112 - 95,143,142 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	94,791,208 - 94,862,210 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	86,897,870 - 86,968,850 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	86,169,618 - 86,240,347 (-)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp40	Rat	Joubert syndrome 22		ISO	USP40 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Joubert syndrome 22	ClinVar	PMID:28492532
Usp40	Rat	Perlman syndrome		ISO	USP40 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Perlman syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp40	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of USP40 mRNA]	CTD	PMID:31150632
Usp40	Rat	1,3-dinitrobenzene	increases expression	EXP		6480464	3-dinitrobenzene results in increased expression of USP40 mRNA	CTD	PMID:24140754
Usp40	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of USP40 mRNA	CTD	PMID:34747641
Usp40	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of USP40 mRNA	CTD	PMID:33387578
Usp40	Rat	3-chloropropane-1,2-diol	decreases expression	EXP		6480464	alpha-Chlorohydrin results in decreased expression of USP40 protein	CTD	PMID:34915118
Usp40	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of USP40 mRNA	CTD	PMID:28628672
Usp40	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Usp40 (Mus musculus)	6480464	Fenretinide results in increased expression of USP40 mRNA	CTD	PMID:28973697
Usp40	Rat	acrolein	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of USP40 mRNA more ...	CTD	PMID:32699268 and PMID:32845096
Usp40	Rat	aflatoxin B1	increases expression	ISO	Usp40 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of USP40 mRNA	CTD	PMID:19770486
Usp40	Rat	alpha-pinene	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of USP40 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of USP40 mRNA	CTD	PMID:32699268
Usp40	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of USP40 mRNA	CTD	PMID:30779732
Usp40	Rat	antirheumatic drug	increases expression	ISO	USP40 (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of USP40 mRNA	CTD	PMID:24449571
Usp40	Rat	aristolochic acid A	decreases expression	ISO	USP40 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of USP40 mRNA	CTD	PMID:33212167
Usp40	Rat	arsane	affects methylation	ISO	USP40 (Homo sapiens)	6480464	Arsenic affects the methylation of USP40 gene	CTD	PMID:25304211
Usp40	Rat	arsenic atom	affects methylation	ISO	USP40 (Homo sapiens)	6480464	Arsenic affects the methylation of USP40 gene	CTD	PMID:25304211
Usp40	Rat	azoxystrobin	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of USP40 mRNA	CTD	PMID:33854195
Usp40	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of USP40 mRNA	CTD	PMID:25181051
Usp40	Rat	bisphenol A	decreases expression	ISO	Usp40 (Mus musculus)	6480464	bisphenol A results in decreased expression of USP40 mRNA	CTD	PMID:32156529
Usp40	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of USP40 mRNA	CTD	PMID:30816183 more ...
Usp40	Rat	bisphenol A	increases expression	ISO	USP40 (Homo sapiens)	6480464	bisphenol A results in increased expression of USP40 mRNA	CTD	PMID:29275510
Usp40	Rat	bisphenol F	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of USP40 mRNA	CTD	PMID:28628672
Usp40	Rat	butanal	decreases expression	ISO	USP40 (Homo sapiens)	6480464	butyraldehyde results in decreased expression of USP40 mRNA	CTD	PMID:26079696
Usp40	Rat	caffeine	decreases phosphorylation	ISO	USP40 (Homo sapiens)	6480464	Caffeine results in decreased phosphorylation of USP40 protein	CTD	PMID:35688186
Usp40	Rat	calcitriol	increases expression	ISO	USP40 (Homo sapiens)	6480464	Calcitriol results in increased expression of USP40 mRNA	CTD	PMID:16002434
Usp40	Rat	carbamazepine	affects expression	ISO	USP40 (Homo sapiens)	6480464	Carbamazepine affects the expression of USP40 mRNA	CTD	PMID:25979313
Usp40	Rat	chlorpyrifos	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of USP40 mRNA	CTD	PMID:33854195
Usp40	Rat	chromium(6+)	affects expression	ISO	Usp40 (Mus musculus)	6480464	chromium hexavalent ion affects the expression of USP40 mRNA	CTD	PMID:28472532
Usp40	Rat	coumestrol	decreases expression	ISO	USP40 (Homo sapiens)	6480464	Coumestrol results in decreased expression of USP40 mRNA	CTD	PMID:19167446
Usp40	Rat	cyclosporin A	decreases expression	ISO	USP40 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of USP40 mRNA	CTD	PMID:25562108
Usp40	Rat	DDE	increases expression	ISO	USP40 (Homo sapiens)	6480464	Dichlorodiphenyl Dichloroethylene results in increased expression of USP40 mRNA	CTD	PMID:38568856
Usp40	Rat	dexamethasone	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of USP40 mRNA	CTD	PMID:28628672
Usp40	Rat	dibutyl phthalate	decreases expression	ISO	Usp40 (Mus musculus)	6480464	Dibutyl Phthalate results in decreased expression of USP40 mRNA	CTD	PMID:21266533
Usp40	Rat	dioxygen	multiple interactions	ISO	Usp40 (Mus musculus)	6480464	Oxygen inhibits the reaction [Oxygen deficiency results in increased expression of USP40 mRNA]	CTD	PMID:22629407
Usp40	Rat	dioxygen	increases expression	ISO	Usp40 (Mus musculus)	6480464	Oxygen deficiency results in increased expression of USP40 mRNA	CTD	PMID:22629407
Usp40	Rat	ethanol	affects expression	ISO	Usp40 (Mus musculus)	6480464	Ethanol affects the expression of USP40 mRNA	CTD	PMID:30319688
Usp40	Rat	FR900359	decreases phosphorylation	ISO	USP40 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of USP40 protein	CTD	PMID:37730182
Usp40	Rat	glyphosate	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of USP40 mRNA	CTD	PMID:33854195
Usp40	Rat	hydralazine	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[Hydralazine co-treated with Valproic Acid] results in increased expression of USP40 mRNA	CTD	PMID:17183730
Usp40	Rat	imidacloprid	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of USP40 mRNA	CTD	PMID:33854195
Usp40	Rat	indometacin	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of USP40 mRNA	CTD	PMID:28628672
Usp40	Rat	iron dichloride	decreases expression	ISO	USP40 (Homo sapiens)	6480464	ferrous chloride results in decreased expression of USP40 mRNA	CTD	PMID:35984750
Usp40	Rat	ketoconazole	decreases expression	ISO	USP40 (Homo sapiens)	6480464	Ketoconazole results in decreased expression of USP40 mRNA	CTD	PMID:36621641
Usp40	Rat	lead diacetate	increases expression	ISO	Usp40 (Mus musculus)	6480464	lead acetate results in increased expression of USP40 mRNA	CTD	PMID:20542052
Usp40	Rat	lead(0)	decreases expression	ISO	USP40 (Homo sapiens)	6480464	Lead results in decreased expression of USP40 mRNA	CTD	PMID:19921347
Usp40	Rat	leflunomide	decreases expression	ISO	USP40 (Homo sapiens)	6480464	leflunomide results in decreased expression of USP40 mRNA	CTD	PMID:28988120
Usp40	Rat	ozone	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of USP40 mRNA more ...	CTD	PMID:32699268 and PMID:32845096
Usp40	Rat	paracetamol	decreases expression	ISO	USP40 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of USP40 mRNA	CTD	PMID:21420995
Usp40	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of USP40 mRNA	CTD	PMID:33387578
Usp40	Rat	pirinixic acid	increases expression	ISO	Usp40 (Mus musculus)	6480464	pirinixic acid results in increased expression of USP40 mRNA	CTD	PMID:18301758 and PMID:21318169
Usp40	Rat	pirinixic acid	multiple interactions	ISO	Usp40 (Mus musculus)	6480464	PPARA protein affects the reaction [pirinixic acid results in increased expression of USP40 mRNA]	CTD	PMID:21318169
Usp40	Rat	sunitinib	increases expression	ISO	USP40 (Homo sapiens)	6480464	Sunitinib results in increased expression of USP40 mRNA	CTD	PMID:31533062
Usp40	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of USP40 mRNA]	CTD	PMID:31150632
Usp40	Rat	tetrachloromethane	decreases expression	EXP		6480464	Carbon Tetrachloride results in decreased expression of USP40 mRNA	CTD	PMID:31150632
Usp40	Rat	thiabendazole	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of USP40 mRNA	CTD	PMID:33854195
Usp40	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of USP40 mRNA	CTD	PMID:34492290
Usp40	Rat	titanium dioxide	decreases methylation	ISO	Usp40 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of USP40 gene	CTD	PMID:35295148
Usp40	Rat	titanium dioxide	increases methylation	ISO	Usp40 (Mus musculus)	6480464	titanium dioxide results in increased methylation of USP40 gene	CTD	PMID:35295148
Usp40	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of USP40 mRNA	CTD	PMID:33387578
Usp40	Rat	triphenyl phosphate	affects expression	ISO	USP40 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of USP40 mRNA	CTD	PMID:37042841
Usp40	Rat	Triptolide	increases expression	EXP		6480464	triptolide results in increased expression of USP40 protein	CTD	PMID:32519852
Usp40	Rat	urethane	decreases expression	ISO	USP40 (Homo sapiens)	6480464	Urethane results in decreased expression of USP40 mRNA	CTD	PMID:28818685
Usp40	Rat	valproic acid	multiple interactions	ISO	USP40 (Homo sapiens)	6480464	[Hydralazine co-treated with Valproic Acid] results in increased expression of USP40 mRNA	CTD	PMID:17183730
Usp40	Rat	valproic acid	affects expression	ISO	USP40 (Homo sapiens)	6480464	Valproic Acid affects the expression of USP40 mRNA	CTD	PMID:25979313
Usp40	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of USP40 mRNA	CTD	PMID:23034163

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp40	Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp40	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp40	Rat	regulation of protein stability	involved_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp40	Rat	cytosol	is_active_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp40	Rat	nucleus	is_active_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp40	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394 and InterPro:IPR018200	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp40	Rat	cysteine-type deubiquitinase activity	enables	IBA	FB:FBgn0005632 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp40	Rat	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Usp40	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp40	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp40	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp40	Rat	oxidoreductase activity	enables	IEA	UniProtKB-KW:KW-0560	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp40	Rat	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	enables	IEA	InterPro:IPR045306	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp40	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases.	Quesada V, etal., Biochem Biophys Res Commun 2004 Jan 30;314(1):54-62.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Usp40
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	96,055,741 - 96,126,766 (-)	NCBI		GRCr8
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	97,032,175 - 97,103,042 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	102,168,363 - 102,239,234 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	100,536,129 - 100,607,106 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	95,072,096 - 95,143,092 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	95,072,112 - 95,143,142 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	94,791,208 - 94,862,210 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	86,897,870 - 86,968,850 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	86,169,618 - 86,240,347 (-)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

USP40
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	233,475,526 - 233,566,782 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	233,475,526 - 233,566,782 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	234,384,172 - 234,475,428 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	234,048,904 - 234,134,606 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	228,105,436 - 228,195,522 (-)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	226,184,857 - 226,274,836 (-)	NCBI		HuRef
CHM1_1	2	234,390,167 - 234,480,204 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	233,964,044 - 234,055,315 (-)	NCBI		T2T-CHM13v2.0

Usp40
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	87,872,841 - 87,936,308 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	87,872,841 - 87,936,273 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	87,945,119 - 88,008,582 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	87,945,119 - 88,008,551 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	89,841,696 - 89,905,126 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	89,776,292 - 89,839,722 (-)	NCBI		MGSCv36	mm8
Celera	1	90,903,174 - 90,967,221 (-)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	44.45	NCBI

Usp40
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	2,661,213 - 2,739,146 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	2,661,233 - 2,739,742 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP40
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	136,078,773 - 136,169,973 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	136,093,737 - 136,184,943 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	120,704,893 - 120,796,084 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	239,615,598 - 239,705,721 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	239,617,442 - 239,705,721 (-)	Ensembl	panpan1.1		panPan2

USP40
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	44,965,276 - 45,021,539 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	45,460,119 - 45,537,523 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	45,224,993 - 45,302,504 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	45,216,601 - 45,302,479 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	45,149,152 - 45,226,628 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	44,995,742 - 45,072,784 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	45,150,957 - 45,228,463 (-)	NCBI		UU_Cfam_GSD_1.0

Usp40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	187,113,531 - 187,179,765 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	3,760,280 - 3,826,206 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	3,759,982 - 3,826,190 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP40
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	133,870,834 - 133,952,863 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	133,870,831 - 133,952,863 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	148,340,802 - 148,418,018 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP40
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	119,516,114 - 119,609,519 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	119,514,754 - 119,609,521 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	79,890,302 - 79,984,155 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp40
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624843	5,961,591 - 6,038,215 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624843	5,958,316 - 6,042,471 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Usp40
202 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	144
Count of miRNA genes:	112
Interacting mature miRNAs:	120
Transcripts:	ENSRNOT00000064171
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	79271511	102910209	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	79271511	91616855	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	77813894	101597663	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	77813894	111552878	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	86369631	92058970	Rat

D9Got234

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	88,619,799 - 88,619,947 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	95,083,982 - 95,084,129	NCBI	Rnor6.0
Rnor_6.0	9	91,041,375 - 91,041,522	NCBI	Rnor6.0
Rnor_5.0	9	90,778,288 - 90,778,435	UniSTS	Rnor5.0
Rnor_5.0	9	94,803,090 - 94,803,237	UniSTS	Rnor5.0
RGSC_v3.4	9	86,909,740 - 86,909,887	UniSTS	RGSC3.4
Celera	9	86,181,488 - 86,181,635	UniSTS
Cytogenetic Map	9	q35	UniSTS

RH130513

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	9	90,799,524 - 90,799,742	NCBI	Rnor5.0
Rnor_5.0	9	94,824,326 - 94,824,544	NCBI	Rnor5.0
Rnor_5.0	3	120,745,107 - 120,745,994	NCBI	Rnor5.0
RGSC_v3.4	3	109,046,603 - 109,047,489	UniSTS	RGSC3.4
RGSC_v3.4	9	86,930,977 - 86,931,194	UniSTS	RGSC3.4
Celera	3	108,112,092 - 108,112,978	UniSTS
Celera	9	86,202,725 - 86,202,942	UniSTS
Cytogenetic Map	9	q35	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH137157

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	88,608,014 - 88,608,176 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	95,072,197 - 95,072,358	NCBI	Rnor6.0
Rnor_5.0	9	94,791,305 - 94,791,466	UniSTS	Rnor5.0
RGSC_v3.4	9	86,897,955 - 86,898,116	UniSTS	RGSC3.4
Celera	9	86,169,703 - 86,169,864	UniSTS
Cytogenetic Map	9	q35	UniSTS

RH141218

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	9	90,798,495 - 90,798,697	NCBI	Rnor5.0
Rnor_5.0	9	94,823,297 - 94,823,499	NCBI	Rnor5.0
Rnor_5.0	3	120,746,689 - 120,746,892	NCBI	Rnor5.0
RGSC_v3.4	3	109,048,185 - 109,048,387	UniSTS	RGSC3.4
RGSC_v3.4	9	86,929,948 - 86,930,149	UniSTS	RGSC3.4
Celera	3	108,113,674 - 108,113,876	UniSTS
Celera	9	86,201,696 - 86,201,897	UniSTS
Cytogenetic Map	9	q35	UniSTS
Cytogenetic Map	3	q35	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001134885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_594428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC092530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY387057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064171 ⟹ ENSRNOP00000060806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl
Rnor_6.0 Ensembl	9	95,072,112 - 95,143,092 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000064642 ⟹ ENSRNOP00000059419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl
Rnor_6.0 Ensembl	9	91,038,064 - 91,100,482 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000070819 ⟹ ENSRNOP00000064567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	88,607,930 - 88,644,557 (-)	Ensembl
Rnor_6.0 Ensembl	9	95,073,536 - 95,108,739 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085325 ⟹ ENSRNOP00000074830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl
Rnor_6.0 Ensembl	9	95,073,337 - 95,143,142 (-)	Ensembl

RefSeq Acc Id:

NM_001134885 ⟹ NP_001128357

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,126,721 (-)	NCBI
mRatBN7.2	9	88,607,930 - 88,678,914 (-)	NCBI
Rnor_6.0	9	95,072,112 - 95,143,092 (-)	NCBI
Rnor_5.0	9	94,791,208 - 94,862,210 (-)	NCBI
RGSC_v3.4	9	86,897,870 - 86,968,850 (-)	RGD
Celera	9	86,169,618 - 86,240,347 (-)	RGD

Sequence:

show sequence

TCCAGAGACCCGGCCTCGCCGGCATGGCGGTGCCTGTTCGGAGCGAGTTCGTTTACTCTGTGCTGTGGCCAGGGCGGGGGTCTGGGCTGTAGGCAGATAGCGTTTAGTTCCACAATGTTTGGGAACCT
ATTTGAAGAGGACTATTCCAGTGTGTCAAGTAGTCAGTATGGAAGCGGGAAGAAATTAAAGACTAAAGGTTTGGAGCCACCTGCCCCTAGAGAATTCACCAAGTTAAGTGGAATCAGAAATCAGGGTG
GAACCTGTTACCTCAGTTCCCTGCTTCAGACACTTCACTTCACACCTGAATTCAGAGAAGCTTTATTTTCTCTTGGTCCGGAAGAGCTCGGTTCTCTAGAGGATAAGGATAAACCCGAAGCAAAGGTC
CGGATCATACCTTTGCAGTTGCAGCGCTTGTTTGCCCAGCTTCTGCTCGTGGACCAGGAGGCTGCATCCACCACAGACCTCACTGACAGCTTCGGGTGGACCAGCGATGAGGAAATGAGACAACACGA
TGTGCAGGAACTCAACCGAATTCTCTTCAGTGCTTTGGAAACTTCTTTAGTTGGGACCTCTGGCCATGACCTCATTCATCGTCTATACCATGGCACCATTGTGAACCAGATTGTTTGCAAAGAGTGTA
AGAATGTCAGTGAGAGGCAGGAAGACTTCTTGGATTTGACAGTAGCAGTCAAAAACGTATCTGGTTTAGAAGATGCACTCTGGAACATGTACGTGGAGGAGGAAATTTTCGACTATGATAACTTGTAC
CACTGTGGAACCTGTGACCGGCTGGTGAAAGCAGCAAAGTCTGCCAAATTACGTAAGCTGCCTCCTTTTCTTACTATTTCATTACTAAGATTTAATTTTGATTTTGTGAAATGTGAACGCTACAAGGA
TACTAGCTGTTATACATTCCCCCTCCGGATCAATCTCAAGCCTTTCTGTGAACAGAGTGACATGGATGACATGGAATATATGTATGACCTCTTCTCTGTCATTATCCACAAAGGTGGCTGCTATGGAG
GTCATTACCATGTGTACATTAAAGACGTTGATCATCTCGGCAACTGGCAATGTCAAGAGGAGATAAGTGATTCAGCTGTGAATTTGAAAGCTCCTCAGAATGAAGAAGAGACTGATGATCCACTGGTG
GTTCTAAAAGCAATCTTATTGCAGGAGGAGGCCAATCAAATTCCTGTTGATCAGCTGGGCCAGAAACTCTTGATAAAAACAGGAATATCTTGGAACAAGAAGTACAGGAAACAGCATGGACCACTGCG
AAAGTTCTTACGGCTCCATCCTCAGGTATTTCTGCTCAGCACAGATGAAAGTACAGTCAGTCTCCAGAGAAGCCATTTTCCCCAGGTCCCGTCTGATCCACAGAGCCATGAACAGATTGCACACACAC
TTGCTTCAGAACCCCCAGGCTTAAGGGATAACATCAGTTGCCCACACTGGTTTGACATCAATGATTCCAAAGTCCAGCCAATCAAAGAGAAAGATATCATGCAGCAGTTCCAGGGTAAAGAAAGTGCC
TACATGCTATTTTATCGGAAAGCCACGCTGCAGAGACCCTCTGAAGCTCAAGCCAATCCAAGATACAGAGTTCCCTGTCATTTACTAAAGGAAATGGATGCAGCCAACGTTCTCCTGCAGACGAGAAG
GGCAGAATGTGACTCTGCAAACAGTACTTTTGAGTTGCATCTCCACTTGGGTCCTCACTACCGTTTCTTCAATGGGGCTCTTCACCCTGCAGTCTCTCAGACTGAGAGCGTGTGGGACTTAACATTTG
ATAAAAGAAAAACTGTAGGAGATCTCCGTCAGTCAATATTTCAGCTATTGGAGTTCTGGGAAGGAGACATGGTTCTCAGTGTTGCGAAGCGTGTGCCAGCAGGACTTCATGTGTACCATACCCTCGAT
GGAGATGAACTGACACTGGGTGAAGCTGAAATCGCTGATGAGGAAGACATCTTTGTATGGAATGGGGTGGAGGTTGGTGGAGTCCAAATTCAGACTGGTTTTGACTGTGAACCTCTGCTGTTACACAT
TCTTCATCTAGAGTTAAGTGGGGAAGGCTCAGAGTGTGAGCAGTTGGTGGAGTCGCCACATGTCTTTCCCGCTAATGCCGAAGTGGGCACTGTGTTCACAGCCTTGGGCACCCCAGAAGGCGTCCTCC
TCATGAACAGTGTGGAATCTACAGATGAAGAGTGCTGGACTGCTATTCCCCAAGAAGACATGAAGAAGACATTCAGAGAGCAAGGTCTCAGAAATGGAAGCTTAATTTTGGTTCAGGATTCAGACAGT
GATGATAACAGTCTGTTGTCCAAACAAGGGAGATGGACCAGCAGCATGAATGAGCTCAACTGGCTCCAAGTGAAAAACTTCTGCCAGTCAGGATCTGAAGAGAAGCAGGTTCAGATAGCCGTGACCAT
GCACACAGTGGTGTTTGATATTCGAATTAAAGCCATAAAGGAATTAAAATTAATGAAGGAACTAGCTGAGAACAGCTGTTTGAGACCCATTGATAGAAACGGGAGGCTCCTTTGTCCAGTACCAGATA
CCAGCACTTTGGAGGAGGCAGAGGTGAAGATGGGGAGCTCCGTGGGACTGTGTCTGGGGAAAGCACCAACTTCCTCTCAGCTGTTCCTGTTTTTTGCTCTGGGGACTGACATTCACCCTGGGGCAGAG
CTGGAAGTCATAGTAGAAGAAACACTCTCAGTGAGAGATTGTTTAAAGATAATGCTGGAGAAGTCAGGTCAGCAAGGAGAGATGTGGCACTTAAGGAAAATGGATTGGTGCTATGAAGCTGGTGAGCC
TTTATGTGAAGAAGATGCAACATTGAAAGAGCTTATGATATGTTCTGGGGACACTTTGCTGTTAACTGAAGGAAAACTGCCTTCTCCGGGGCACTTGAAGATGCCCATCTGGTGGTACCAGCCTGAAA
GGCTGTCAGGACACCGTGAGAGCTGGGACCACTTAAACTGTGCCTTTTCTCAAGGTAGCAGCTGGGGAGCTGCTCCCACCCAAGGTGCTCCTGGCCCTGAGCCTGCAGAAGTCTCTCTCCTCTACTTG
GGAGATATGGAGATCTCAGAAGAGGCCACTTTGGCAGAACTGAAGTCTAAGGCCTTGGCCTTGCCTTCTGTGTTGAAGCTCGCCGTCCAGTCCACAAGCCTGCTTAGAGTCTGGACAGTGGAGAGCAA
GCGCCCCAGCAGGCTCTTGCGCACTGGTTGGCGGCAGCTCAAGGAGTACAGACTGGGCCGGAGAACTGAGCTCTGCTTAGAGCTCCTTCAAAAGGAGGAGGACTTGGGCCCCCGGGATGTACTGCTGA
GGACACAGCTACGCATCCCTGGTGAGAGAGCCTACTCCCTGGCCAAAGACCTAGTATGGGACACCACCAGAGGATGGACTGCTGGCTCCTTGAGGCAGAGAGTGGCTGACTTCTATTCTCTTCCTGTG
GAGAAAATTGAAATTGCCAAATATTTTCCTGAAAAGTTTGAGTGGCTTCCAATATCTAGCTGGAATCAGCAAATTGCCAAAAGGAAAAAGAAGAAAAACCAAGATACTTTGCAAGGGGGACCATATTA
CTTAAAAGACGGAGACACTATTGGCATTAAGAATCTCTTGTTTGATGACAATGATGATTTCAGCACAATCAGAGATGACATTGGAAAGGAAAACCAGAAGCGGACAGCTCTGGAGAAAAAGAAAAGCC
GAGAAGTCCAACGTACACAGAGCAGCGATGTGTTCTCCAATTCAGGAATGCCTACTAGGCCCCGGGGACCAGAAGCTTCTCTGTCCATCCATGTTGCGAGCTTCAGATAGCCCCTGCAGCAGTATGTC
CTGTGTTCCAGATAGAACCGTCCTGTCAGTTCTATGACAGAAACCTTGTGGGCTTATAGTGGACAAGCTGGTTGCCTCCACAGCCAGTGATCTCAAGTCTTCAGCTTTGTGACAGGCTAAGGGACAGC
ACTTCTCAGATCAAGCAGGTGCAGCTGACCCCAGGCACTGTGCCAACTGGAATACATCTCCCATGCCTGATCTTAGTGGCCTCTCCTGAAAGCATACTTCTGGACAATGGCAAGTTGTTCAAAGAGGA
CAATTCTGATAGGTAAGACACAAGGTCAGTTACCTACCCATTCTTGAGGTGACCAGTTAGTCATCTAGTTCTGACACCTCACTGAAGCTGCAACGGAAGGATGTGTATCTTGACTTCATTCCCAGTTC
TAGCCCTCACTATGCCATGCGCCTCCTCTTGGGCCAAATTTAAAGTGGGACTCTTAAGACAGCTGTGCAAGAAGAGCTGCGTGTGGCATCAACTGCCCTGTTGTCTACCACTTACACACTCTGGCAAG
AGGCAGGACCATCAAAGAAGCCTAGCACAACAAATCCAGGCTCCCAGTTGTCCTAGGCAAACTGAGGCCTCTTCCTTCTCAGTCAGCACAGGTAACTGAAGAGATATGGTGTTTATGTACTGTAATTA
ATATACTGTCAAAACAGCATCAGCTACTGAACTGGCAGGTTAGGCCTGGGCTGACTTAGCCTATGACAGTATTCCTAAGAGGGTATCGGTTTCTTACCGACTCTGCCATGTCTTCATGTAACAGAACT
GAGGTGGTGTAAGACAAGGAAAAGTTACTTTGGCCTGGGCTCAGCTGGCCCTTGCTGGCTAAAAGCTTTTCATATTCTGCTGTTAGCCATACTGGCTTCTCTGTGGAGCTGCTGATCAGCACGTAATC
CTGCTCTTCCTTTGTCTTCCCAACACCATCTGCCAGAGTTGGCAGCGTCGTGTTAGGTGGCTGCTTCTATTGAAGCACTTGGATTAGAAGATGTTGGACTTGGATTGGTTACCTTTTCTGGCCATGTC
CTTGTAGCTACACCCCAAGGGGTTCTGGGAGACCCAGATAGTAAACATTACTTGACCACAACTGAGTCCTCTGGGTACTGGCTACTGTTTCTTGTACTGTAACTGACATAGTTCCTTAGTTTGTTCTT
TCACCCCAGCCCTGACAATATAGTACTAGCTCAGATACCTTGCTTTCAGGAAGCCAGAAGCTCCCTGACCCTCTCAGTACTTAGAGAAGCCAGAAGCCATGCCTCAAGTGCTGGCTGCAGCCCGAGTC
TCTTGACAGGTCTTTCTATTTGGTTGGTTTCTTGTTTGTTTTTAATTGGGGGATAGAATAGACAAAACAGGGAAAAAACACTAAGATTTTATTAAAAATAAACCATTTTAAAGTTGCAGTCCTCAA

hide sequence

RefSeq Acc Id:

XM_008767261 ⟹ XP_008765483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,060,265 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,612,550 - 88,678,935 (-)	NCBI
Rnor_6.0	9	95,076,755 - 95,142,991 (-)	NCBI

Sequence:

show sequence

GGGGCCGGGGAACGGGACGCAGGGAGGGAGGAGGGCCCCGTAGAGACGACCCCGGCGGCCTGGGGCGAAACGCCGGGCCTCTGTTGGCGGCGCGTCAAGGGTCGGGCCGCGGGGACGCGCGCCCGTCG
CGCTCCTGGGCCCTGGGCGGCTTGGTGGGCGGGAAGGCCTCTGGAATGGCATGACGGGAATCCAGCTCGCGAGCTCGAGGCCTGACTCCCGAGTTCCATTTCTTGAGCTTTTCTTCAGAGGACTGTGT
TGGAAAGGAAAAGAACTGCATTTTGGGCGTTCCTGTCTCTTAAAAGAGAGTCCTCAGCGTTTTTACCTCAAATGCCCCTTAACCACACAAACAGAGCAGACTCCCGCAGGGTCCACAGGTCTGGGGTT
GGATTCCTGGGTATGTGTTGGAAGGCCACTGGACTCCATAGCTCTAATGACCAGTTTTTCTTTCTTAAGGTACTTACGCCAGGTTCTCTAGTTTGGGGCCAAAGTGCAGAAACTACTGTCACGAAGAT
TAATGTGATAGGTTTAAGTCCCTGAAACGCTGTGATCTGGTACAGTATGTGAAGGGATGGGAGAAGCTGAGATTTCATAATTGATGAAGGCTGCTGTCAACTAACACTGTCTGTCCCCCTCTCCCTCT
CTCCCTCCTTGTCTCCTCATTTAGTGATGTGGAATCCAAGAATAGTTATCAGTTCTTGTGAGCCAAGCCCTTTGTACTCAGTAACCTTTCTTTTGTCATGTGATTGGTTAAAGTACCCTATAAAACAT
GCACGGCCCCATTTTACATAGAAGTAAATGTTAGCTAAATAACTTGTCCAGGATCACACAGGTTAATCAGCACCCCGTGTAAGTAGGAAGGATAAGTCGGGTCTCCGCTGTCTCCTAAACACAGACTA
CTGTATTTTCTGAAGGATGATTTTTAATAAAACAACTTCGCTCGAAAGATAAGAAAAACTTGGGGGTGGAGGTTCATTTCAAGAATAAAGACATTTATGTAACATGTCGCTTTCTTTAAAGGATAGCG
TTTAGTTCCACAATGTTTGGGAACCTATTTGAAGAGGACTATTCCAGTGTGTCAAGTAGTCAGTATGGAAGCGGGAAGAAATTAAAGACTAAAGGTTTGGAGCCACCTGCCCCTAGAGAATTCACCAA
GTTAAGTGGAATCAGAAATCAGGGTGGAACCTGTTACCTCAGTTCCCTGCTTCAGACACTTCACTTCACACCTGAATTCAGAGAAGCTTTATTTTCTCTTGGTCCGGAAGAGCTCGGTTCTCTAGAGG
ATAAGGATAAACCCGAAGCAAAGGTCCGGATCATACCTTTGCAGTTGCAGCGCTTGTTTGCCCAGCTTCTGCTCGTGGACCAGGAGGCTGCATCCACCACAGACCTCACTGACAGCTTCGGGTGGACC
AGCGATGAGGAAATGAGACAACACGATGTGCAGGAACTCAACCGAATTCTCTTCAGTGCTTTGGAAACTTCTTTAGTTGGGACCTCTGGCCATGACCTCATTCATCGTCTATACCATGGCACCATTGT
GAACCAGATTGTTTGCAAAGAGTGTAAGAATGTCAGTGAGAGGCAGGAAGACTTCTTGGATTTGACAGTAGCAGTCAAAAACGTATCTGGTTTAGAAGATGCACTCTGGAACATGTACGTGGAGGAGG
AAATTTTCGACTATGATAACTTGTACCACTGTGGAACCTGTGACCGGCTGGTGAAAGCAGCAAAGTCTGCCAAATTACGTAAGCTGCCTCCTTTTCTTACTATTTCATTACTAAGATTTAATTTTGAT
TTTGTGAAATGTGAACGCTACAAGGATACTAGCTGTTATACATTCCCCCTCCGGATCAATCTCAAGCCTTTCTGTGAACAGAGTGACATGGATGACATGGAATATATGTATGACCTCTTCTCTGTCAT
TATCCACAAAGGTGGCTGCTATGGAGGTCATTACCATGTGTACATTAAAGACGTTGATCATCTCGGCAACTGGCAATGTCAAGAGGAGATAAGTGATTCAGCTGTGAATTTGAAAGCTCCTCAGAATG
AAGAAGAGACTGATGATCCACTGGTGGTTCTAAAAGCAATCTTATTGCAGGAGGAGGCCAATCAAATTCCTGTTGATCAGCTGGGCCAGAAACTCTTGATAAAAACAGGAATATCTTGGAACAAGAAG
TACAGGAAACAGCATGGACCACTGCGAAAGTTCTTACGGCTCCATCCTCAGGTATTTCTGCTCAGCACAGATGAAAGTACAGTCAGTCTCCAGAGAAGCCATTTTCCCCAGGTCCCGTCTGATCCACA
GAGCCATGAACAGATTGCACACACACTTGCTTCAGAACCCCCAGGCTTAAGGGATAACATCAGTTGCCCACACTGGTTTGACATCAATGATTCCAAAGTCCAGCCAATCAAAGAGAAAGATATCATGC
AGCAGTTCCAGGGTAAAGAAAGTGCCTACATGCTATTTTATCGGAAAGCCACGCTGCAGAGACCCTCTGAAGCTCAAGCCAATCCAAGATACAGAGTTCCCTGTCATTTACTAAAGGAAATGGATGCA
GCCAACGTTCTCCTGCAGACGAGAAGGGCAGAATGTGACTCTGCAAACAGTACTTTTGAGTTGCATCTCCACTTGGGTCCTCACTACCGTTTCTTCAATGGGGCTCTTCACCCTGCAGTCTCTCAGAC
TGAGAGCGTGTGGGACTTAACATTTGATAAAAGAAAAACTGTAGGAGATCTCCGTCAGTCAATATTTCAGCTATTGGAGTTCTGGGAAGGAGACATGGTTCTCAGTGTTGCGAAGCGTGTGCCAGCAG
GACTTCATGTGTACCATACCCTCGATGGAGATGAACTGACACTGGGTGAAGCTGAAATCGCTGATGAGGAAGACATCTTTGTATGGAATGGGGTGGAGGTTGGTGGAGTCCAAATTCAGACTGGTTTT
GACTGTGAACCTCTGCTGTTACACATTCTTCATCTAGAGTTAAGTGGGGAAGGCTCAGAGTGTGAGCAGTTGGTGGAGTCGCCACATGTCTTTCCCGCTAATGCCGAAGTGGGCACTGTGTTCACAGC
CTTGGGCACCCCAGAAGGCGTCCTCCTCATGAACAGTGTGGAATCTACAGATGAAGAGTGCTGGACTGCTATTCCCCAAGAAGACATGAAGAAGACATTCAGAGAGCAAGGTCTCAGAAATGGAAGCT
TAATTTTGGTTCAGGATTCAGACAGTGATGATAACAGTCTGTTGTCCAAACAAGGGAGATGGACCAGCAGCATGAATGAGCTCAACTGGCTCCAAGTGAAAAACTTCTGCCAGTCAGGATCTGAAGAG
AAGCAGGTTCAGATAGCCGTGACCATGCACACAGTGGTGTTTGATATTCGAATTAAAGCCATAAAGGAATTAAAATTAATGAAGGAACTAGCTGAGAACAGCTGTTTGAGACCCATTGATAGAAACGG
GAGGCTCCTTTGTCCAGTACCAGATACCAGCACTTTGGAGGAGGCAGAGGTGAAGATGGGGAGCTCCGTGGGACTGTGTCTGGGGAAAGCACCAACTTCCTCTCAGCTGTTCCTGTTTTTTGCTCTGG
GGACTGACATTCACCCTGGGGCAGAGCTGGAAGTCATAGTAGAAGAAACACTCTCAGTGAGAGATTGTTTAAAGATAATGCTGGAGAAGTCAGGTCAGCAAGGAGAGATGTGGCACTTAAGGAAAATG
GATTGGTGCTATGAAGCTGGTGAGCCTTTATGTGAAGAAGATGCAACATTGAAAGAGCTTATGATATGTTCTGGGGACACTTTGCTGTTAACTGAAGGAAAACTGCCTTCTCCGGGGCACTTGAAGAT
GCCCATCTGGTGGTACCAGCCTGAAAGGCTGTCAGGACACCGTGAGAGCTGGGACCACTTAAACTGTGCCTTTTCTCAAGGTAGCAGCTGGGGAGCTGCTCCCACCCAAGGTGCTCCTGGCCCTGAGC
CTGCAGAAGTCTCTCTCCTCTACTTGGGAGATATGGAGATCTCAGAAGAGGCCACTTTGGCAGAACTGAAGTCTAAGGCCTTGGCCTTGCCTTCTGTGTTGAAGCTCGCCGTCCAGTCCACAAGCCTG
CTTAGAGTCTGGACAGTGGAGAGCAAGCGCCCCAGCAGGCTCTTGCGCACTGGTTGGCGGCAGCTCAAGGAGTACAGACTGGGCCGGAGAACTGAGCTCTGCTTAGAGCTCCTTCAAAAGGAGGAGGA
CTTGGGTGTCTGCTTTGTTCTTCTATAGCCCCCGGGATGTACTGCTGAGGACACAGCTACGCATCCCTGGTGAGAGAGCCTACTCCCTGGCCAAAGACCTAGTATGGGACACCACCAGAG

hide sequence

RefSeq Acc Id:

XM_039083725 ⟹ XP_038939653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,126,754 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI

RefSeq Acc Id:

XM_039083726 ⟹ XP_038939654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,126,754 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI

RefSeq Acc Id:

XM_039083727 ⟹ XP_038939655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,125,584 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XM_039083728 ⟹ XP_038939656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,116,297 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,668,507 (-)	NCBI

RefSeq Acc Id:

XM_039083729 ⟹ XP_038939657

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,071,424 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,623,417 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XM_039083730 ⟹ XP_038939658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,089,978 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,643,483 (-)	NCBI

RefSeq Acc Id:

XM_039083732 ⟹ XP_038939660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,101,385 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,653,602 (-)	NCBI

RefSeq Acc Id:

XM_039083733 ⟹ XP_038939661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,102,578 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,654,767 (-)	NCBI

RefSeq Acc Id:

XM_039083734 ⟹ XP_038939662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,087,299 - 96,125,584 (-)	NCBI
mRatBN7.2	9	88,639,487 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XM_039083735 ⟹ XP_038939663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,092,392 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,654,768 (-)	NCBI

RefSeq Acc Id:

XM_063267293 ⟹ XP_063123363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,058,891 - 96,126,766 (-)	NCBI

RefSeq Acc Id:

XM_063267294 ⟹ XP_063123364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,070,980 - 96,126,766 (-)	NCBI

RefSeq Acc Id:

XM_063267295 ⟹ XP_063123365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,084,660 (-)	NCBI

RefSeq Acc Id:

XM_063267296 ⟹ XP_063123366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,084,681 (-)	NCBI

RefSeq Acc Id:

XR_001839663

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,061,769 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,612,353 - 88,678,935 (-)	NCBI
Rnor_6.0	9	95,076,535 - 95,142,991 (-)	NCBI

Sequence:

show sequence

GGGGCCGGGGAACGGGACGCAGGGAGGGAGGAGGGCCCCGTAGAGACGACCCCGGCGGCCTGGGGCGAAACGCCGGGCCTCTGTTGGCGGCGCGTCAAGGGTCGGGCCGCGGGGACGCGCGCCCGTCG
CGCTCCTGGGCCCTGGGCGGCTTGGTGGGCGGGAAGGCCTCTGGAATGGCATGACGGGAATCCAGCTCGCGAGCTCGAGGCCTGACTCCCGAGTTCCATTTCTTGAGCTTTTCTTCAGAGGACTGTGT
TGGAAAGGAAAAGAACTGCATTTTGGGCGTTCCTGTCTCTTAAAAGAGAGTCCTCAGCGTTTTTACCTCAAATGCCCCTTAACCACACAAACAGAGCAGACTCCCGCAGGGTCCACAGGTCTGGGGTT
GGATTCCTGGGTATGTGTTGGAAGGCCACTGGACTCCATAGCTCTAATGACCAGTTTTTCTTTCTTAAGGTACTTACGCCAGGTTCTCTAGTTTGGGGCCAAAGTGCAGAAACTACTGTCACGAAGAT
TAATGTGATAGGTTTAAGTCCCTGAAACGCTGTGATCTGGTACAGTATGTGAAGGGATGGGAGAAGCTGAGATTTCATAATTGATGAAGGCTGCTGTCAACTAACACTGTCTGTCCCCCTCTCCCTCT
CTCCCTCCTTGTCTCCTCATTTAGTGATGTGGAATCCAAGAATAGTTATCAGTTCTTGTGAGCCAAGCCCTTTGTACTCAGTAACCTTTCTTTTGTCATGTGATTGGTTAAAGTACCCTATAAAACAT
GCACGGCCCCATTTTACATAGAAGTAAATGTTAGCTAAATAACTTGTCCAGGATCACACAGGTTAATCAGCACCCCGTGTAAGTAGGAAGGATAAGTCGGGTCTCCGCTGTCTCCTAAACACAGACTA
CTGTATTTTCTGAAGGATGATTTTTAATAAAACAACTTCGCTCGAAAGATAAGAAAAACTTGGGGGTGGAGGTTCATTTCAAGAATAAAGACATTTATGTAACATGTCGCTTTCTTTAAAGGATAGCG
TTTAGTTCCACAATGTTTGGGAACCTATTTGAAGAGGACTATTCCAGTGTGTCAAGTAGTCAGTATGGAAGCGGGAAGAAATTAAAGACTAAAGGTTTGGAGCCACCTGCCCCTAGAGAATTCACCAA
GTTAAGTGGAATCAGAAATCAGGGTGGAACCTGTTACCTCAGTTCCCTGCTTCAGACACTTCACTTCACACCTGAATTCAGAGAAGCTTTATTTTCTCTTGGTCCGGAAGAGCTCGGTTCTCTAGAGG
ATAAGGATAAACCCGAAGCAAAGGTCCGGATCATACCTTTGCAGTTGCAGCGCTTGTTTGCCCAGCTTCTGCTCGTGGACCAGGAGGCTGCATCCACCACAGACCTCACTGACAGCTTCGGGTGGACC
AGCGATGAGGAAATGAGACAACACGATGTGCAGGAACTCAACCGAATTCTCTTCAGTGCTTTGGAAACTTCTTTAGTTGGGACCTCTGGCCATGACCTCATTCATCGTCTATACCATGGCACCATTGT
GAACCAGATTGTTTGCAAAGAGTGTAAGAATGTCAGTGAGAGGCAGGAAGACTTCTTGGATTTGACAGTAGCAGTCAAAAACGTATCTGGTTTAGAAGATGCACTCTGGAACATGTACGTGGAGGAGG
AAATTTTCGACTATGATAACTTGTACCACTGTGGAACCTGTGACCGGCTGGTGAAAGCAGCAAAGTCTGCCAAATTACGTAAGCTGCCTCCTTTTCTTACTATTTCATTACTAAGATTTAATTTTGAT
TTTGTGAAATGTGAACGCTACAAGGATACTAGCTGTTATACATTCCCCCTCCGGATCAATCTCAAGCCTTTCTGTGAACAGAGTGACATGGATGACATGGAATATATGTATGACCTCTTCTCTGTCAT
TATCCACAAAGGTGGCTGCTATGGAGGTCATTACCATGTGTACATTAAAGACGTTGATCATCTCGGCAACTGGCAATGTCAAGAGGAGATAAGTGATTCAGCTGTGAATTTGAAAGCTCCTCAGAATG
AAGAAGAGACTGATGATCCACTGGTGGTTCTAAAAGCAATCTTATTGCAGGAGGAGGCCAATCAAATTCCTGTTGATCAGCTGGGCCAGAAACTCTTGATAAAAACAGGAATATCTTGGAACAAGAAG
TACAGGAAACAGCATGGACCACTGCGAAAGTTCTTACGGCTCCATCCTCAGGTATTTCTGCTCAGCACAGATGAAAGTACAGTCAGTCTCCAGAGAAGCCATTTTCCCCAGGTCCCGTCTGATCCACA
GAGCCATGAACAGATTGCACACACACTTGCTTCAGAACCCCCAGGCTTAAGGGATAACATCAGTTGCCCACACTGGTTTGACATCAATGATTCCAAAGTCCAGCCAATCAAAGAGAAAGATATCATGC
AGCAGTTCCAGGGTAAAGAAAGTGCCTACATGCTATTTTATCGGAAAGCCACGCTGCAGAGACCCTCTGAAGCTCAAGCCAATCCAAGATACAGAGTTCCCTGTCATTTACTAAAGGAAATGGATGCA
GCCAACGTTCTCCTGCAGACGAGAAGGGCAGAATGTGACTCTGCAAACAGTACTTTTGAGTTGCATCTCCACTTGGGTCCTCACTACCGTTTCTTCAATGGGGCTCTTCACCCTGCAGTCTCTCAGAC
TGAGAGCGTGTGGGACTTAACATTTGATAAAAGAAAAACTGTAGGAGATCTCCGTCAGTCAATATTTCAGCTATTGGAGTTCTGGGAAGGAGACATGGTTCTCAGTGTTGCGAAGCGTGTGCCAGCAG
GACTTCATGTGTACCATACCCTCGATGGAGATGAACTGACACTGGGTGAAGCTGAAATCGCTGATGAGGAAGACATCTTTGTATGGAATGGGGTGGAGGTTGGTGGAGTCCAAATTCAGACTGGTTTT
GACTGTGAACCTCTGCTGTTACACATTCTTCATCTAGAGTTAAGTGGGGAAGGCTCAGAGTGTGAGCAGTTGGTGGAGTCGCCACATGTCTTTCCCGCTAATGCCGAAGTGGGCACTGTGTTCACAGC
CTTGGGCACCCCAGAAGGCGTCCTCCTCATGAACAGTGTGGAATCTACAGATGAAGAGTGCTGGACTGCTATTCCCCAAGAAGACATGAAGAAGACATTCAGAGAGCAAGGTCTCAGAAATGGAAGCT
TAATTTTGGTTCAGGATTCAGACAGTGATGATAACAGTCTGTTGTCCAAACAAGGGAGATGGACCAGCAGCATGAATGAGCTCAACTGGCTCCAAGTGAAAAACTTCTGCCAGTCAGGATCTGAAGAG
AAGCAGGTTCAGATAGCCGTGACCATGCACACAGTGGTGTTTGATATTCGAATTAAAGCCATAAAGGAATTAAAATTAATGAAGGAACTAGCTGAGAACAGCTGTTTGAGACCCATTGATAGAAACGG
GAGGCTCCTTTGTCCAGTACCAGATACCAGCACTTTGGAGGAGGCAGAGGTGAAGATGGGGAGCTCCGTGGGACTGTGTCTGGGGAAAGCACCAACTTCCTCTCAGCTGTTCCTGTTTTTTGCTCTGG
GGACTGACATTCACCCTGGGGCAGAGCTGGAAGTCATAGTAGAAGAAACACTCTCAGTGAGAGATTGTTTAAAGATAATGCTGGAGAAGTCAGGTCAGCAAGGAGAGATGTGGCACTTAAGGAAAATG
GATTGGTGCTATGAAGCTGGTGAGCCTTTATGTGAAGAAGATGCAACATTGAAAGAGCTTATGATATGTTCTGGGGACACTTTGCTGTTAACTGAAGGAAAACTGCCTTCTCCGGGGCACTTGAAGAT
GCCCATCTGGTGGTACCAGCCTGAAAGGCTGTCAGGACACCGTGAGAGCTGGGACCACTTAAACTGTGCCTTTTCTCAAGGTAGCAGCTGGGGAGCTGCTCCCACCCAAGGTGCTCCTGGCCCTGAGC
CTGCAGAAGTCTCTCTCCTCTACTTGGGAGATATGGAGATCTCAGAAGAGGCCACTTTGGCAGAACTGAAGTCTAAGTCTGTCCTGATATGGCATGTGTTATATGCCATGGTCAGGGGCCTTGGCCTT
GCCTTCTGTGTTGAAGCTCGCCGTCCAGTCCACAAGCCTGCTTAGAGTCTGGACAGTGGAGAGCAAGCGCCCCAGCAGGCTCTTGCGCACTGGTTGGCGGCAGCTCAAGGAGTACAGACTGGGCCGGA
GAACTGAGCTCTGCTTAGAGCTCCTTCAAAAGGAGGAGGACTTGGGCCCCCGGGATGTACTGCTGAGGACACAGCTACGCATCCCTGGTGAGAGAGCCTACTCCCTGGCCAAAGACCTAGTATGGGAC
ACCACCAGAGGATGGACTGCTGGCTCCTTGAGGCAGAGAGTGGCTGACTTCTATTCTCTTCCTGTGGAGAAAATTGAAATTGCCAAATATTTTCCTGAAAAGTTTGAGTGGCTTCCAATATCTAGCTG
GAATCAGCAAATTGCCAAAA

hide sequence

RefSeq Acc Id:

XR_005488916

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,075,103 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,627,291 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XR_005488917

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,075,141 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,627,323 - 88,678,935 (-)	NCBI


Protein RefSeqs	NP_001128357	(Get FASTA)	NCBI Sequence Viewer
	XP_008765483	(Get FASTA)	NCBI Sequence Viewer
	XP_038939653	(Get FASTA)	NCBI Sequence Viewer
	XP_038939654	(Get FASTA)	NCBI Sequence Viewer
	XP_038939655	(Get FASTA)	NCBI Sequence Viewer
	XP_038939656	(Get FASTA)	NCBI Sequence Viewer
	XP_038939657	(Get FASTA)	NCBI Sequence Viewer
	XP_038939658	(Get FASTA)	NCBI Sequence Viewer
	XP_038939660	(Get FASTA)	NCBI Sequence Viewer
	XP_038939661	(Get FASTA)	NCBI Sequence Viewer
	XP_038939662	(Get FASTA)	NCBI Sequence Viewer
	XP_038939663	(Get FASTA)	NCBI Sequence Viewer
	XP_063123363	(Get FASTA)	NCBI Sequence Viewer
	XP_063123364	(Get FASTA)	NCBI Sequence Viewer
	XP_063123365	(Get FASTA)	NCBI Sequence Viewer
	XP_063123366	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ91027	(Get FASTA)	NCBI Sequence Viewer
	EDL92114	(Get FASTA)	NCBI Sequence Viewer
	EDL92115	(Get FASTA)	NCBI Sequence Viewer
	EDL92116	(Get FASTA)	NCBI Sequence Viewer
	EDL92117	(Get FASTA)	NCBI Sequence Viewer
	EDL92118	(Get FASTA)	NCBI Sequence Viewer
	EDL92119	(Get FASTA)	NCBI Sequence Viewer
	EDL92120	(Get FASTA)	NCBI Sequence Viewer
	EDL92121	(Get FASTA)	NCBI Sequence Viewer
	EDL92122	(Get FASTA)	NCBI Sequence Viewer
	EDL92123	(Get FASTA)	NCBI Sequence Viewer
	EDL92124	(Get FASTA)	NCBI Sequence Viewer
	EDL92125	(Get FASTA)	NCBI Sequence Viewer
	EDL92126	(Get FASTA)	NCBI Sequence Viewer
	EDL92127	(Get FASTA)	NCBI Sequence Viewer
	EDL92128	(Get FASTA)	NCBI Sequence Viewer
	EDL92129	(Get FASTA)	NCBI Sequence Viewer
	EDL92130	(Get FASTA)	NCBI Sequence Viewer
	EDL92131	(Get FASTA)	NCBI Sequence Viewer
	EDL92132	(Get FASTA)	NCBI Sequence Viewer
	EDL92133	(Get FASTA)	NCBI Sequence Viewer
	EDL92134	(Get FASTA)	NCBI Sequence Viewer
	EDL92135	(Get FASTA)	NCBI Sequence Viewer
	EDL92136	(Get FASTA)	NCBI Sequence Viewer
	EDL92137	(Get FASTA)	NCBI Sequence Viewer
	EDL92138	(Get FASTA)	NCBI Sequence Viewer
	EDL92139	(Get FASTA)	NCBI Sequence Viewer
	EDL92140	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059419.3
	ENSRNOP00000060806
	ENSRNOP00000060806.1
	ENSRNOP00000064567.3
	ENSRNOP00000074830.2

RefSeq Acc Id:

NP_001128357 ⟸ NM_001134885

- UniProtKB:

D3ZL95 (UniProtKB/TrEMBL), A6JQE7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFGNLFEEDYSSVSSSQYGSGKKLKTKGLEPPAPREFTKLSGIRNQGGTCYLSSLLQTLHFTPEFREALFSLGPEELGSLEDKDKPEAKVRIIPLQLQRLFAQLLLVDQEAASTTDLTDSFGWTSDEE
MRQHDVQELNRILFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSGLEDALWNMYVEEEIFDYDNLYHCGTCDRLVKAAKSAKLRKLPPFLTISLLRFNFDFVKC
ERYKDTSCYTFPLRINLKPFCEQSDMDDMEYMYDLFSVIIHKGGCYGGHYHVYIKDVDHLGNWQCQEEISDSAVNLKAPQNEEETDDPLVVLKAILLQEEANQIPVDQLGQKLLIKTGISWNKKYRKQ
HGPLRKFLRLHPQVFLLSTDESTVSLQRSHFPQVPSDPQSHEQIAHTLASEPPGLRDNISCPHWFDINDSKVQPIKEKDIMQQFQGKESAYMLFYRKATLQRPSEAQANPRYRVPCHLLKEMDAANVL
LQTRRAECDSANSTFELHLHLGPHYRFFNGALHPAVSQTESVWDLTFDKRKTVGDLRQSIFQLLEFWEGDMVLSVAKRVPAGLHVYHTLDGDELTLGEAEIADEEDIFVWNGVEVGGVQIQTGFDCEP
LLLHILHLELSGEGSECEQLVESPHVFPANAEVGTVFTALGTPEGVLLMNSVESTDEECWTAIPQEDMKKTFREQGLRNGSLILVQDSDSDDNSLLSKQGRWTSSMNELNWLQVKNFCQSGSEEKQVQ
IAVTMHTVVFDIRIKAIKELKLMKELAENSCLRPIDRNGRLLCPVPDTSTLEEAEVKMGSSVGLCLGKAPTSSQLFLFFALGTDIHPGAELEVIVEETLSVRDCLKIMLEKSGQQGEMWHLRKMDWCY
EAGEPLCEEDATLKELMICSGDTLLLTEGKLPSPGHLKMPIWWYQPERLSGHRESWDHLNCAFSQGSSWGAAPTQGAPGPEPAEVSLLYLGDMEISEEATLAELKSKALALPSVLKLAVQSTSLLRVW
TVESKRPSRLLRTGWRQLKEYRLGRRTELCLELLQKEEDLGPRDVLLRTQLRIPGERAYSLAKDLVWDTTRGWTAGSLRQRVADFYSLPVEKIEIAKYFPEKFEWLPISSWNQQIAKRKKKKNQDTLQ
GGPYYLKDGDTIGIKNLLFDDNDDFSTIRDDIGKENQKRTALEKKKSREVQRTQSSDVFSNSGMPTRPRGPEASLSIHVASFR

hide sequence

RefSeq Acc Id:	XP_008765483 ⟸ XM_008767261
- Peptide Label:	isoform X4
- UniProtKB:	A6JQE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFGNLFEEDYSSVSSSQYGSGKKLKTKGLEPPAPREFTKLSGIRNQGGTCYLSSLLQTLHFTPEFREALFSLGPEELGSLEDKDKPEAKVRIIPLQLQRLFAQLLLVDQEAASTTDLTDSFGWTSDEE MRQHDVQELNRILFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSGLEDALWNMYVEEEIFDYDNLYHCGTCDRLVKAAKSAKLRKLPPFLTISLLRFNFDFVKC ERYKDTSCYTFPLRINLKPFCEQSDMDDMEYMYDLFSVIIHKGGCYGGHYHVYIKDVDHLGNWQCQEEISDSAVNLKAPQNEEETDDPLVVLKAILLQEEANQIPVDQLGQKLLIKTGISWNKKYRKQ HGPLRKFLRLHPQVFLLSTDESTVSLQRSHFPQVPSDPQSHEQIAHTLASEPPGLRDNISCPHWFDINDSKVQPIKEKDIMQQFQGKESAYMLFYRKATLQRPSEAQANPRYRVPCHLLKEMDAANVL LQTRRAECDSANSTFELHLHLGPHYRFFNGALHPAVSQTESVWDLTFDKRKTVGDLRQSIFQLLEFWEGDMVLSVAKRVPAGLHVYHTLDGDELTLGEAEIADEEDIFVWNGVEVGGVQIQTGFDCEP LLLHILHLELSGEGSECEQLVESPHVFPANAEVGTVFTALGTPEGVLLMNSVESTDEECWTAIPQEDMKKTFREQGLRNGSLILVQDSDSDDNSLLSKQGRWTSSMNELNWLQVKNFCQSGSEEKQVQ IAVTMHTVVFDIRIKAIKELKLMKELAENSCLRPIDRNGRLLCPVPDTSTLEEAEVKMGSSVGLCLGKAPTSSQLFLFFALGTDIHPGAELEVIVEETLSVRDCLKIMLEKSGQQGEMWHLRKMDWCY EAGEPLCEEDATLKELMICSGDTLLLTEGKLPSPGHLKMPIWWYQPERLSGHRESWDHLNCAFSQGSSWGAAPTQGAPGPEPAEVSLLYLGDMEISEEATLAELKSKALALPSVLKLAVQSTSLLRVW TVESKRPSRLLRTGWRQLKEYRLGRRTELCLELLQKEEDLGVCFVLL hide sequence

Ensembl Acc Id:

ENSRNOP00000064567 ⟸ ENSRNOT00000070819

Ensembl Acc Id:

ENSRNOP00000074830 ⟸ ENSRNOT00000085325

Ensembl Acc Id:

ENSRNOP00000060806 ⟸ ENSRNOT00000064171

Protein Domains

Alcohol dehydrogenase-like C-terminal Alcohol dehydrogenase-like N-terminal USP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A2R6-F1-model_v2	AlphaFold	D4A2R6	1-997	view protein structure
AF-D3ZL95-F1-model_v2	AlphaFold	D3ZL95	1-1235	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13696841

Promoter ID:

EPDNEW_R7365

Type:

multiple initiation site

Name:

Usp40_1

Description:

ubiquitin specific peptidase 40

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	95,143,096 - 95,143,156	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-26830	BioCyc
Ensembl Genes	ENSRNOG00000018395	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000049962	Ensembl
Ensembl Transcript	ENSRNOT00000064171	ENTREZGENE
	ENSRNOT00000064171.3	UniProtKB/TrEMBL
	ENSRNOT00000064642.4	UniProtKB/TrEMBL
	ENSRNOT00000070819.3	UniProtKB/TrEMBL
	ENSRNOT00000085325.2	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
	Medium-chain alcohol dehydrogenases, catalytic domain	UniProtKB/TrEMBL
	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	ADH_C	UniProtKB/TrEMBL
	ADH_GroES-like	UniProtKB/TrEMBL
	GroES-like	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Peptidase_C19_UCH	UniProtKB/TrEMBL
	SDH-like	UniProtKB/TrEMBL
	USP_CS	UniProtKB/TrEMBL
	USP_dom	UniProtKB/TrEMBL
KEGG Report	rno:316599	UniProtKB/TrEMBL
NCBI Gene	316599	ENTREZGENE
PANTHER	SORBITOL DEHYDROGENASE	UniProtKB/TrEMBL
	SORBITOL DEHYDROGENASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 40	UniProtKB/TrEMBL
Pfam	ADH_N	UniProtKB/TrEMBL
	ADH_zinc_N	UniProtKB/TrEMBL
	UCH	UniProtKB/TrEMBL
PhenoGen	Usp40	PhenoGen
PROSITE	USP_1	UniProtKB/TrEMBL
	USP_2	UniProtKB/TrEMBL
	USP_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018395	RatGTEx
	ENSRNOG00000049962	RatGTEx
Superfamily-SCOP	GroES_like	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	A0A0G2K923_RAT	UniProtKB/TrEMBL
	A0A8J8XW61_RAT	UniProtKB/TrEMBL
	A6JQE7	ENTREZGENE, UniProtKB/TrEMBL
	A6JQE8_RAT	UniProtKB/TrEMBL
	A6JQE9_RAT	UniProtKB/TrEMBL
	A6JQF0	ENTREZGENE, UniProtKB/TrEMBL
	A6JQF2_RAT	UniProtKB/TrEMBL
	A6JQF6_RAT	UniProtKB/TrEMBL
	A6JQF9_RAT	UniProtKB/TrEMBL
	A6JQG0_RAT	UniProtKB/TrEMBL
	A6JQG8_RAT	UniProtKB/TrEMBL
	A6JQG9	ENTREZGENE, UniProtKB/TrEMBL
	A6JQH0	ENTREZGENE, UniProtKB/TrEMBL
	A6JQH1_RAT	UniProtKB/TrEMBL
	A6JQH2_RAT	UniProtKB/TrEMBL
	A6JQH3_RAT	UniProtKB/TrEMBL
	D3ZL95	ENTREZGENE, UniProtKB/TrEMBL
	D4A2R6_RAT	UniProtKB/TrEMBL
	M0R5A3	ENTREZGENE
	Q6TUH3	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	M0R5A3	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Usp40	ubiquitin specific peptidase 40	LOC100911860	ubiquitin carboxyl-terminal hydrolase 40-like	Data merged from RGD:6490066	737654	PROVISIONAL
2012-07-05	LOC100911860	ubiquitin carboxyl-terminal hydrolase 40-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-04	Usp40	ubiquitin specific peptidase 40	Usp40	ubiquitin specific protease 40	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Usp40	ubiquitin specific protease 40	Usp40_predicted	ubiquitin specific protease 40 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Usp40_predicted	ubiquitin specific protease 40 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar