Gene: Smim47 (small integral membrane protein 47) Rattus norvegicus |
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Analyze |
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Symbol: |
Smim47 (Ensembl: LOC103691109) |
Name: |
small integral membrane protein 47 (Ensembl:uncharacterized LOC103691109) |
RGD ID: |
9421087 |
Description: |
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Type: |
protein-coding (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Previously known as: |
hypothetical protein LOC690774; LOC103691109; LOC690774; uncharacterized LOC103691109; uncharacterized LOC105372440 homolog; uncharacterized protein LOC103691109 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 103,881,242 - 103,881,667 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 94,744,635 - 94,746,122 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 94,744,661 - 94,747,123 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 100,130,112 - 100,130,537 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 108,602,752 - 108,603,177 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 101,893,187 - 101,893,612 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 100,234,593 - 100,236,057 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | RGSC_v3.4 | 1 | 94,727,922 - 94,728,347 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 1 | 89,011,236 - 89,012,700 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q22 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
Smim47 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 103,881,242 - 103,881,667 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 94,744,635 - 94,746,122 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 94,744,661 - 94,747,123 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 100,130,112 - 100,130,537 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 108,602,752 - 108,603,177 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 101,893,187 - 101,893,612 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 100,234,593 - 100,236,057 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | RGSC_v3.4 | 1 | 94,727,922 - 94,728,347 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 1 | 89,011,236 - 89,012,700 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q22 | NCBI | | | | |
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SMIM47 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 19 | 50,785,728 - 50,786,160 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 50,776,141 - 50,793,142 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 19 | 51,288,985 - 51,289,417 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 19 | q13.33 | NCBI | | | | | CHM1_1 | 19 | 51,281,141 - 51,291,257 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 53,875,222 - 53,875,654 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Gm15517 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 7 | 43,910,865 - 43,911,315 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 7 | 43,910,871 - 43,911,315 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 7 | 44,261,441 - 44,261,891 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 7 | 44,261,447 - 44,261,891 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 7 | 51,516,849 - 51,517,261 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 7 | 44,129,520 - 44,129,933 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 7 | 39,719,688 - 39,722,001 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | B3 | NCBI | | | | | cM Map | 7 | 28.78 | NCBI | | | | |
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SMIM47 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 106,059,000 - 106,059,515 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 105,633,827 - 105,634,256 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 106,571,170 - 106,571,599 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 106,571,170 - 106,571,599 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 106,243,695 - 106,244,124 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 105,885,190 - 105,885,619 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 106,725,804 - 106,726,233 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SMIM47 (Chlorocebus sabaeus - green monkey) |
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QTLs in Region (mRatBN7.2)
2313402 | Anxrr24 | Anxiety related response QTL 24 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 1 | 48963584 | 144267916 | Rat | 631688 | Hcas2 | Hepatocarcinoma susceptibility QTL 2 | 3 | 0.0001 | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 5925874 | 115540829 | Rat | 4889494 | Scort2 | Serum corticosterone level QTL 2 | 4.2 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 1 | 80592172 | 125592172 | Rat | 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 94642644 | 214537671 | Rat | 738022 | Anxrr13 | Anxiety related response QTL 13 | 4.6 | 0.00039 | locomotor behavior trait (VT:0001392) | number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514) | 1 | 83547917 | 128547917 | Rat | 631495 | Bp96 | Blood pressure QTL 96 | 4.52 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 22340647 | 102268831 | Rat | 7411712 | Strs4 | Sensitivity to stroke QTL 4 | 8.7 | | cerebrum integrity trait (VT:0010549) | percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932) | 1 | 78430536 | 123430536 | Rat | 7421628 | Bp361 | Blood pressure QTL 361 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 66023617 | 118608521 | Rat | 1300121 | Hrtrt1 | Heart rate QTL 1 | 3.7 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 1 | 65789093 | 115540829 | Rat | 1358359 | Sradr1 | Stress Responsive Adrenal Weight QTL 1 | 4.74 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 1 | 30882023 | 123479925 | Rat | 1331751 | Bp199 | Blood pressure QTL 199 | 3.60022 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 1 | 94494440 | 181830018 | Rat | 10059597 | Bp377 | Blood pressure QTL 377 | 3.42 | 0.025 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 32737458 | 199368955 | Rat | 1331793 | Bp200 | Blood pressure QTL 200 | 3.71601 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 94494440 | 172949803 | Rat | 1331800 | Scl25 | Serum cholesterol level QTL 25 | 3.013 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 1 | 94494440 | 117601394 | Rat | 1300153 | Bp171 | Blood pressure QTL 171 | 3.37 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 1 | 90664883 | 143200202 | Rat | 1302788 | Scl19 | Serum cholesterol QTL 19 | 4.6 | 0.001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 1 | 90532338 | 123479925 | Rat | 1549903 | Bp267 | Blood pressure QTL 267 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 77876254 | 106047988 | Rat | 1358192 | Ept13 | Estrogen-induced pituitary tumorigenesis QTL 13 | 3.4 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 1 | 77494165 | 122494165 | Rat | 1582234 | Gluco18 | Glucose level QTL 18 | 3.4 | 0.0003 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 78479925 | 123479925 | Rat | 1578654 | Bss10 | Bone structure and strength QTL 10 | 4 | | femur morphology trait (VT:0000559) | femoral neck cortical cross-sectional area (CMO:0001702) | 1 | 49393172 | 159356837 | Rat | 61342 | Bp27 | Blood pressure QTL 27 | 3.4 | 0.0006 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 56732668 | 98773277 | Rat | 61344 | Bp29 | Blood pressure QTL 29 | 7.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 78350581 | 123350581 | Rat | 70209 | Niddm23 | Non-insulin dependent diabetes mellitus QTL 23 | 2.82 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 94494440 | 198324465 | Rat | 2293142 | Bp314 | Blood pressure QTL 314 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 92184926 | 137184926 | Rat | 70225 | Bp58 | Blood pressure QTL 58 | 3.3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 32356093 | 162846471 | Rat | 724521 | Uae1 | Urinary albumin excretion QTL 1 | 3.8 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 90508614 | 173018436 | Rat | 2298545 | Neuinf8 | Neuroinflammation QTL 8 | 4.6 | | nervous system integrity trait (VT:0010566) | spinal cord beta-2 microglobulin mRNA level (CMO:0002125) | 1 | 57336763 | 151090257 | Rat | 2313059 | Bss55 | Bone structure and strength QTL 55 | 3.2 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 1 | 43284731 | 118944897 | Rat | 2313051 | Bss57 | Bone structure and strength QTL 57 | 3.7 | 0.0001 | tibia strength trait (VT:1000284) | bone polar moment of inertia (CMO:0001558) | 1 | 43284731 | 118944897 | Rat | 2313094 | Bss58 | Bone structure and strength QTL 58 | 3.7 | 0.0001 | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 1 | 43284731 | 118944897 | Rat | 10054135 | Gmadr2 | Adrenal mass QTL 2 | 1.97 | 0.0129 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 1 | 77857876 | 122857876 | Rat | 2300324 | Fetw1 | Fetal weight QTL 1 | 12.1 | 0.005 | fetal growth trait (VT:0004201) | fetal body weight (CMO:0002080) | 1 | 85424647 | 100358001 | Rat | 2313099 | Bss56 | Bone structure and strength QTL 56 | 2.4 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 1 | 43284731 | 118944897 | Rat | 2313078 | Bss54 | Bone structure and strength QTL 54 | 3.5 | 0.0001 | tibia area (VT:1000281) | tibia midshaft cross-sectional area (CMO:0001717) | 1 | 43284731 | 118944897 | Rat | 1358902 | Bw47 | Body weight QTL 47 | 1.67 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 90508614 | 180359386 | Rat | 2313098 | Bmd70 | Bone mineral density QTL 70 | 3.6 | 0.0001 | tibia mineral mass (VT:1000283) | compact volumetric bone mineral density (CMO:0001730) | 1 | 43284731 | 118944897 | Rat | 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 49393289 | 199050459 | Rat | 2313072 | Bss53 | Bone structure and strength QTL 53 | 4.3 | 0.0001 | tibia length (VT:0004357) | tibia length (CMO:0000450) | 1 | 43284731 | 118944897 | Rat | 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 1 | 81591954 | 219808434 | Rat | 1331749 | Hrtrt11 | Heart rate QTL 11 | 2.973 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 1 | 94494440 | 198211706 | Rat | 2313083 | Bmd74 | Bone mineral density QTL 74 | 4 | 0.0001 | tibia mineral mass (VT:1000283) | total volumetric bone mineral density (CMO:0001728) | 1 | 82174743 | 118944897 | Rat | 724529 | Cm16 | Cardiac mass QTL 16 | 2.7 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 1 | 87580395 | 150700247 | Rat | 724567 | Tcas6 | Tongue tumor susceptibility QTL 6 | 6.85 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 1 | 92948896 | 144267916 | Rat | 2300164 | Bmd44 | Bone mineral density QTL 44 | 5.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 1 | 56949932 | 101949932 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
ENSRNOT00000108755 |
Type: |
CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 Ensembl | 1 | 94,744,661 - 94,747,123 (+) | Ensembl |
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RefSeq Acc Id: |
ENSRNOT00000115964 |
Type: |
CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 Ensembl | 1 | 94,744,661 - 94,747,123 (+) | Ensembl |
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RefSeq Acc Id: |
ENSRNOT00000118443 |
Type: |
CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 Ensembl | 1 | 94,744,661 - 94,747,123 (+) | Ensembl |
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RefSeq Acc Id: |
NM_001384852 ⟹ NP_001371781 |
RefSeq Status: |
VALIDATED |
Type: |
CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 1 | 103,881,242 - 103,881,667 (+) | NCBI | mRatBN7.2 | 1 | 94,744,696 - 94,745,121 (+) | NCBI |
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RefSeq Acc Id: |
NP_001371781 ⟸ NM_001384852 |
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2023-03-10 |
Smim47 |
small integral membrane protein 47 |
LOC103691109 |
uncharacterized LOC103691109 |
Nomenclature updated to reflect human and mouse nomenclature |
1299863 |
APPROVED |
2015-07-29 |
LOC103691109 |
uncharacterized LOC103691109 |
LOC690774 |
hypothetical protein LOC690774 |
Data merged from RGD:1592190 |
737654 |
PROVISIONAL |
2014-08-25 |
LOC103691109 |
uncharacterized LOC103691109 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
2006-11-20 |
LOC690774 |
hypothetical protein LOC690774 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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