LOC103690615 (transmembrane protein 234-like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC103690615 (transmembrane protein 234-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103690615
Name: transmembrane protein 234-like
RGD ID: 9400366
Description: Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr896,618,812 - 6,619,136 (+)NCBIGRCr8
mRatBN7.296,382,212 - 6,382,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl96,382,212 - 6,382,523 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.09110,227 - 111,032 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9110,507 - 110,749 (-)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Variants

.
Variants in LOC103690615
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:78
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000000136
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system respiratory system
High
Medium
Low 3 4
Below cutoff 1 3

Sequence


RefSeq Acc Id: ENSRNOT00000000136   ⟹   ENSRNOP00000000136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl96,382,212 - 6,382,523 (+)Ensembl
Rnor_6.0 Ensembl9110,507 - 110,749 (-)Ensembl
RefSeq Acc Id: XM_039084955   ⟹   XP_038940883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,618,812 - 6,619,136 (+)NCBI
mRatBN7.296,382,212 - 6,382,523 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038940883 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000136
  ENSRNOP00000000136.7
RefSeq Acc Id: ENSRNOP00000000136   ⟸   ENSRNOT00000000136
RefSeq Acc Id: XP_038940883   ⟸   XM_039084955
- UniProtKB: F1LT60 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LT60-F1-model_v2 AlphaFold F1LT60 1-81 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9400366 AgrOrtholog
BioCyc Gene G2FUF-28401 BioCyc
Ensembl Genes ENSRNOG00000000124 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000136.7 UniProtKB/TrEMBL
InterPro TMEM234 UniProtKB/TrEMBL
NCBI Gene LOC103690615 ENTREZGENE
PANTHER PTHR28668 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 234 UniProtKB/TrEMBL
Pfam TMEM234 UniProtKB/TrEMBL
PhenoGen LOC103690615 PhenoGen
RatGTEx ENSRNOG00000000124 RatGTEx
UniProt F1LT60 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-25 LOC103690615  transmembrane protein 234-like      Symbol and Name status set to provisional 70820 PROVISIONAL