Smokl8 (sperm motility kinase like 8) - Rat Genome Database

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Gene: Smokl8 (sperm motility kinase like 8) Rattus norvegicus
Analyze
Symbol: Smokl8 (Ensembl: LOC103690230)
Name: sperm motility kinase like 8 (Ensembl:sperm motility kinase W-like)
RGD ID: 9282079
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: LOC100912359; LOC103690230; putative sperm motility kinase W; Smokl2; sperm motility kinase like 2; sperm motility kinase W-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8718,711,250 - 18,729,425 (-)NCBIGRCr8
mRatBN7.2717,172,843 - 17,196,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl717,177,556 - 17,192,039 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0720,333,600 - 20,336,804 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0720,503,027 - 20,504,508 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Smokl8
25 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063264550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000098106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl717,177,556 - 17,190,144 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl717,177,556 - 17,181,897 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl717,184,411 - 17,192,039 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl717,184,411 - 17,190,108 (-)Ensembl
RefSeq Acc Id: XM_063264550   ⟹   XP_063120620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264551   ⟹   XP_063120621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264552   ⟹   XP_063120622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264553   ⟹   XP_063120623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264554   ⟹   XP_063120624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264555   ⟹   XP_063120625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264556   ⟹   XP_063120626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264557   ⟹   XP_063120627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264558   ⟹   XP_063120628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264559   ⟹   XP_063120629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264560   ⟹   XP_063120630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264561   ⟹   XP_063120631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264562   ⟹   XP_063120632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264563   ⟹   XP_063120633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264564   ⟹   XP_063120634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264565   ⟹   XP_063120635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264566   ⟹   XP_063120636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264567   ⟹   XP_063120637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264568   ⟹   XP_063120638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264569   ⟹   XP_063120639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264570   ⟹   XP_063120640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
RefSeq Acc Id: XM_063264571   ⟹   XP_063120641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8718,711,250 - 18,729,425 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_063120640   ⟸   XM_063264570
RefSeq Acc Id: XP_063120638   ⟸   XM_063264568
RefSeq Acc Id: XP_063120635   ⟸   XM_063264565
RefSeq Acc Id: XP_063120633   ⟸   XM_063264563
RefSeq Acc Id: XP_063120624   ⟸   XM_063264554
RefSeq Acc Id: XP_063120621   ⟸   XM_063264551
RefSeq Acc Id: XP_063120622   ⟸   XM_063264552
RefSeq Acc Id: XP_063120620   ⟸   XM_063264550
RefSeq Acc Id: XP_063120630   ⟸   XM_063264560
RefSeq Acc Id: XP_063120628   ⟸   XM_063264558
RefSeq Acc Id: XP_063120641   ⟸   XM_063264571
RefSeq Acc Id: XP_063120639   ⟸   XM_063264569
RefSeq Acc Id: XP_063120637   ⟸   XM_063264567
RefSeq Acc Id: XP_063120631   ⟸   XM_063264561
RefSeq Acc Id: XP_063120632   ⟸   XM_063264562
RefSeq Acc Id: XP_063120623   ⟸   XM_063264553
RefSeq Acc Id: XP_063120636   ⟸   XM_063264566
RefSeq Acc Id: XP_063120634   ⟸   XM_063264564
RefSeq Acc Id: XP_063120626   ⟸   XM_063264556
RefSeq Acc Id: XP_063120629   ⟸   XM_063264559
RefSeq Acc Id: XP_063120625   ⟸   XM_063264555
RefSeq Acc Id: XP_063120627   ⟸   XM_063264557

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34650 BioCyc
Ensembl Genes ENSRNOG00000070022 Ensembl
NCBI Gene LOC103690230 ENTREZGENE
PhenoGen Smokl8 PhenoGen
RatGTEx ENSRNOG00000070022 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-16 Smokl8  sperm motility kinase like 8  Smokl2  sperm motility kinase like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Smokl2  sperm motility kinase like 2  LOC103690230  sperm motility kinase W-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC103690230  sperm motility kinase W-like  LOC100912359  sperm motility kinase W-like  Data merged from RGD:6487235 737654 PROVISIONAL
2014-08-25 LOC103690230  sperm motility kinase W-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100912359  sperm motility kinase W-like      Symbol and Name status set to provisional 70820 PROVISIONAL