LOC103692755 (polycomb group RING finger protein 2-like) - Rat Genome Database

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Gene: LOC103692755 (polycomb group RING finger protein 2-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103692755
Name: polycomb group RING finger protein 2-like
RGD ID: 9238983
Description: Predicted to be part of PcG protein complex.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87940,169 - 941,274 (-)NCBIGRCr8
mRatBN7.27355,251 - 356,246 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7355,251 - 356,246 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.071,395,794 - 2,340,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
PRC1 complex  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in LOC103692755
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000110353   ⟹   ENSRNOP00000092169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7355,251 - 356,246 (-)Ensembl
RefSeq Acc Id: XM_039080570   ⟹   XP_038936498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87940,169 - 941,274 (-)NCBI
mRatBN7.27355,251 - 356,246 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038936498 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092169.1
Reference Protein Sequences
RefSeq Acc Id: XP_038936498   ⟸   XM_039080570
RefSeq Acc Id: ENSRNOP00000092169   ⟸   ENSRNOT00000110353
Protein Domains
RAWUL

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35408 BioCyc
Ensembl Genes ENSRNOG00000068259 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000110353.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RAWUL UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene LOC103692755 ENTREZGENE
PANTHER POLYCOMB GROUP RING FINGER PROTEIN 2 UniProtKB/TrEMBL
  RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT UniProtKB/TrEMBL
Pfam RAWUL UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/TrEMBL
PhenoGen LOC103692755 PhenoGen
RatGTEx ENSRNOG00000068259 RatGTEx
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I6AVB6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-25 LOC103692755  polycomb group RING finger protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL