LOC103691973 (uncharacterized LOC103691973)

Gene: LOC103691973 (uncharacterized LOC103691973) Rattus norvegicus

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Symbol:

LOC103691973

Name:

uncharacterized LOC103691973

RGD ID:

9110674

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	178,148,354 - 178,159,414 (+)	NCBI		GRCr8
mRatBN7.2	3	157,729,291 - 157,733,784 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	3	165,778,876 - 165,780,207 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	3	156,293,469 - 156,294,800 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC103691973
8 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	149040888	168026850	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005502737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010065473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010065474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_600484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005502737

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	178,148,354 - 178,159,414 (+)	NCBI
mRatBN7.2	3	157,729,291 - 157,733,784 (+)	NCBI

RefSeq Acc Id:

XR_005502738

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	178,148,354 - 178,159,414 (+)	NCBI
mRatBN7.2	3	157,729,291 - 157,733,784 (+)	NCBI

RefSeq Acc Id:

XR_005502739

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	178,148,354 - 178,159,414 (+)	NCBI
mRatBN7.2	3	157,729,291 - 157,733,784 (+)	NCBI

RefSeq Acc Id:

XR_010065473

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	178,148,354 - 178,159,414 (+)	NCBI

RefSeq Acc Id:

XR_010065474

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	178,148,354 - 178,159,414 (+)	NCBI

RefSeq Acc Id:

XR_591867

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	178,148,359 - 178,159,414 (+)	NCBI
mRatBN7.2	3	157,729,298 - 157,733,784 (+)	NCBI
Rnor_6.0	3	165,778,876 - 165,780,207 (+)	NCBI

Sequence:

show sequence

TATCAATCATTAACCAAGAAACTGCCCCCACAGACTTGTCTATAGGTCATTCTGGGGGAGGTAA
TCCCTCAGCTGAGGCTCCCTCTTCTCAGGTGGGTTCTCAGGTTTGTTTCATGTTGAGAAACACC
AATCAGAACAGTAGTTGACTGGCATTTCACCCCTGGCACCTCGACCCGAGATGTGTGCTCACCC
TCCCTCCACCAACGCTGATCTGAACTTTGCTATCTGCTAAGGATGAGAAAGTTGTCGTGCCCTG
TTGTGACTGCCCTGTATGCGTATGACCTTGTACTGACCACCCCAGGCTCTCCCTCCCAGAATTC
CCTCCTCCTTTTGCAAAAACATTCTGACGTTTTCAGACGCCATCTTGCCTCACGAGCATGCGCA
GTCAAAATGTGCTGTCTTTGCATGGCAGACGCCAAAGGACTCCCAAAGACATTTGAATGGGAAA
TGTCCCACATAGATTCATATATATTGGAACTTATGGCCCCCCAGTCAGCGGCACTTTTGAGGGA
GATTAAAGGAAGTATGGTGTTGGGAGCAGGCTTTGAAGAACCTTCTCATTCCATTGCCGTCCAA
CATGGGCAAATTACCGGTGTGTTTGGAGATGAAGTGTCCCCCAAAAGACCCTTGTTGAGGGCTT
AGACCCCAGCAGGTCAGACTAAGCTGGGGGGATCAGCTCTGCCCTGAGCCTGCCGTGATTGAGC
TATGACCCGATCAATCGATCAATCGATGGATCACTGATTTTGAACAGGCTTGCTGCACCATATC
CTCCGAAGTACCCTGCCCCCATGCTATTCTGTTCTACCGTGGACCCTGCTGACCAGGAAACCGC
ATCTCTGAATCAATGAGTCAAAGAAGACTTCCCTTCATTCTTAAGTAGTTTTTCTTTGGGCAGC
ACAGTGAACACCGTCCGAAGACAGTGGTTCCTCCTGGATGCTCCACATGCGGTTCTGTCTCGCT
TTCTGTTAT

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-46682	BioCyc
NCBI Gene	LOC103691973	ENTREZGENE
PhenoGen	LOC103691973	PhenoGen
RNAcentral	URS0000CCEB41	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-08-25	LOC103691973	uncharacterized LOC103691973			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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