Gene: Smim41 (small integral membrane protein 41) Rattus norvegicus |
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Analyze |
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Symbol: |
Smim41 |
Name: |
small integral membrane protein 41 |
RGD ID: |
9071826 |
Description: |
INTERACTS WITH epoxiconazole (ortholog) |
Type: |
protein-coding (Ensembl: lncRNA)
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RefSeq Status: |
INFERRED |
Previously known as: |
AC119007.4; LOC100912495; LOC103692985; reprimo-like protein-like; uncharacterized LOC103692985 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 7 | 134,288,923 - 134,291,997 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 7 | 132,410,179 - 132,413,253 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 132,408,978 - 132,413,672 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 7 | 134,211,837 - 134,214,906 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 7 | 136,441,353 - 136,444,422 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 7 | 136,351,435 - 136,354,510 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 7 | 142,939,934 - 142,944,152 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 142,941,435 - 142,944,169 (+) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 140,741,979 - 140,745,026 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 7 | 128,874,334 - 128,878,552 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | q36 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
Smim41 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 7 | 134,288,923 - 134,291,997 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 7 | 132,410,179 - 132,413,253 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 132,408,978 - 132,413,672 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 7 | 134,211,837 - 134,214,906 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 7 | 136,441,353 - 136,444,422 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 7 | 136,351,435 - 136,354,510 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 7 | 142,939,934 - 142,944,152 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 142,941,435 - 142,944,169 (+) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 140,741,979 - 140,745,026 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 7 | 128,874,334 - 128,878,552 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | q36 | NCBI | | | | |
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SMIM41 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 12 | 52,079,704 - 52,108,255 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 12 | 52,079,704 - 52,108,255 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 12 | 52,473,488 - 52,502,039 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 12 | q13.13 | NCBI | | | | | T2T-CHM13v2.0 | 12 | 52,043,284 - 52,071,838 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Smim41 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 15 | 101,191,040 - 101,195,307 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 15 | 101,191,113 - 101,195,307 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 15 | 101,293,163 - 101,297,426 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 15 | 101,293,212 - 101,297,426 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 15 | 101,123,643 - 101,127,857 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 15 | 101,121,246 - 101,124,624 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 15 | 103,441,271 - 103,445,479 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | F1 | NCBI | | | | | cM Map | 15 | 56.68 | NCBI | | | | |
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SMIM41 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 10 | 42,087,633 - 42,116,218 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 12 | 42,084,396 - 42,112,981 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 12 | 36,655,947 - 36,683,919 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 12 | 37,431,778 - 37,452,449 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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SMIM41 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 27 | 43,326,285 - 43,329,823 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 27 | 2,923,352 - 2,926,882 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 27 | 2,940,006 - 2,943,523 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 27 | 2,926,392 - 2,929,885 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 27 | 43,724,500 - 43,728,037 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Smim41 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 63,632,796 - 63,637,217 (-) | NCBI | | HiC_Itri_2 | | |
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SMIM41 (Chlorocebus sabaeus - green monkey) |
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QTLs in Region (mRatBN7.2)
1300179 | Kidm5 | Kidney mass QTL 5 | 3.51 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 7 | 43747012 | 135012528 | Rat | 70173 | Niddm19 | Non-insulin dependent diabetes mellitus QTL 19 | 4.33 | 0.00005 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 7 | 64002457 | 135012528 | Rat | 1358891 | Bp265 | Blood pressure QTL 265 | 2.21 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 83591953 | 134666232 | Rat | 1358914 | Bp266 | Blood pressure QTL 266 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 83591953 | 134666232 | Rat | 1549899 | Stresp8 | Stress response QTL 8 | 4.37 | 0.0008 | stress-related behavior trait (VT:0010451) | defensive burying duration (CMO:0001961) | 7 | 90482196 | 135012528 | Rat | 2299163 | Iddm34 | Insulin dependent diabetes mellitus QTL 34 | 2.71 | | blood glucose amount (VT:0000188) | age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140) | 7 | 91281130 | 135012528 | Rat | 731176 | Glom5 | Glomerulus QTL 5 | 2.5 | 0.0035 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 7 | 96670164 | 135012528 | Rat | 1331731 | Bp216 | Blood pressure QTL 216 | 2.851 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 102297359 | 133492884 | Rat | 731174 | Uae23 | Urinary albumin excretion QTL 23 | 2.4 | 0.0042 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 7 | 104603555 | 135012528 | Rat | 2306821 | Bp335 | Blood pressure QTL 335 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 106571501 | 135012528 | Rat | 631663 | Bw6 | Body weight QTL 6 | 3.4 | | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 111075573 | 134976056 | Rat | 1300112 | Bp183 | Blood pressure QTL 183 | 3.51 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 7 | 111182207 | 135012528 | Rat | 1331748 | Bp215 | Blood pressure QTL 215 | 4.043 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 112308254 | 133492884 | Rat | 1357339 | Stl14 | Serum triglyceride level QTL 14 | 3.45 | 0.0001 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 7 | 112729683 | 133492707 | Rat | 1354582 | Stl11 | Serum triglyceride level QTL 11 | 3.42 | | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 7 | 119513385 | 135012528 | Rat | |