Lmln (leishmanolysin like peptidase) - Rat Genome Database

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Gene: Lmln (leishmanolysin like peptidase) Chinchilla lanigera
Analyze
Symbol: Lmln
Name: leishmanolysin like peptidase
RGD ID: 9064101
Description: ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leishmanolysin-like (metallopeptidase M8 family); leishmanolysin-like peptidase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542011,867,465 - 11,953,266 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542011,867,034 - 11,953,303 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
focal adhesion  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lmln
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542011,867,465 - 11,953,266 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542011,867,034 - 11,953,303 (-)NCBIChiLan1.0ChiLan1.0
LMLN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383197,960,217 - 198,043,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3197,960,200 - 198,043,720 (+)EnsemblGRCh38hg38GRCh38
GRCh373197,687,088 - 197,770,591 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363199,171,468 - 199,254,988 (+)NCBINCBI36Build 36hg18NCBI36
Build 343199,175,380 - 199,253,878NCBI
Celera3196,303,224 - 196,385,377 (+)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3194,989,555 - 195,071,146 (+)NCBIHuRef
CHM1_13197,657,991 - 197,740,784 (+)NCBICHM1_1
T2T-CHM13v2.03200,692,672 - 200,776,106 (+)NCBIT2T-CHM13v2.0
Lmln
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391632,881,974 - 32,948,065 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1632,882,891 - 32,948,065 (+)EnsemblGRCm39 Ensembl
GRCm381633,061,870 - 33,127,695 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,062,521 - 33,127,695 (+)EnsemblGRCm38mm10GRCm38
MGSCv371633,062,607 - 33,125,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361632,982,268 - 33,045,406 (+)NCBIMGSCv36mm8
Celera1633,541,917 - 33,604,956 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.6NCBI
Lmln
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81181,161,330 - 81,230,972 (-)NCBIGRCr8
mRatBN7.21167,656,241 - 67,725,889 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,658,152 - 67,724,243 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1176,495,203 - 76,561,218 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,157,017 - 69,223,029 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01168,184,293 - 68,250,306 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,895,141 - 70,963,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,897,052 - 70,961,358 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,980,288 - 74,048,100 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,481,117 - 69,547,133 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,540,938 - 69,605,571 (-)NCBI
Celera1167,105,608 - 67,170,858 (-)NCBICelera
Cytogenetic Map11q22NCBI
LMLN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22195,891,976 - 196,004,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13195,899,788 - 196,012,338 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03195,396,514 - 195,477,580 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13205,268,896 - 205,348,412 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3205,268,896 - 205,348,412 (+)Ensemblpanpan1.1panPan2
LMLN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13328,648,742 - 28,738,499 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3328,655,631 - 28,738,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3328,670,581 - 28,759,784 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03328,881,987 - 28,971,189 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3328,888,355 - 28,971,265 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13328,677,907 - 28,766,633 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03328,723,414 - 28,812,625 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03329,344,364 - 29,434,119 (-)NCBIUU_Cfam_GSD_1.0
Lmln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602125,720,618 - 125,791,544 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493678493,725 - 164,968 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493678493,734 - 164,686 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMLN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13134,596,150 - 134,656,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113134,596,116 - 134,656,751 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213144,253,451 - 144,301,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMLN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11591,676,060 - 91,745,251 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1591,676,379 - 91,744,928 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604165,626,595 - 65,697,207 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmln
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473060,818,084 - 60,872,030 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473060,817,980 - 60,872,046 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016953   ⟹   ENSCLAP00000016789
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542011,867,465 - 11,953,266 (-)Ensembl
RefSeq Acc Id: XM_013513591   ⟹   XP_013369045
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542011,867,034 - 11,953,303 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013369045 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016789
  ENSCLAP00000016789.1
Reference Protein Sequences
RefSeq Acc Id: XP_013369045   ⟸   XM_013513591
- UniProtKB: A0A8C2VK23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016789   ⟸   ENSCLAT00000016953


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011520 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016953 ENTREZGENE
  ENSCLAT00000016953.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.170.20 UniProtKB/TrEMBL
  Leishmanolysin , domain 2 UniProtKB/TrEMBL
  Leishmanolysin domain 3 UniProtKB/TrEMBL
InterPro Peptidase_M8 UniProtKB/TrEMBL
NCBI Gene Lmln ENTREZGENE
PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE UniProtKB/TrEMBL
  PTHR10942 UniProtKB/TrEMBL
Pfam Peptidase_M8 UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
UniProt A0A8C2VK23 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Lmln  leishmanolysin like peptidase    leishmanolysin-like (metallopeptidase M8 family)  Symbol and/or name change 5135510 APPROVED