Arsb (arylsulfatase B) - Rat Genome Database

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Gene: Arsb (arylsulfatase B) Chinchilla lanigera
Analyze
Symbol: Arsb
Name: arylsulfatase B
RGD ID: 9059633
Description: ENCODES a protein that exhibits arylsulfatase activity (ortholog); N-acetylgalactosamine-4-sulfatase activity (ortholog); N-acetylgalactosamine-6-sulfatase activity (ortholog); INVOLVED IN anterior head development (ortholog); autophagy (ortholog); colon epithelial cell migration (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); Hermansky-Pudlak syndrome 2 (ortholog); FOUND IN cell surface (ortholog); lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542522,119,930 - 22,279,006 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542522,120,507 - 22,281,221 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell surface  (ISO)
lysosome  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Arsb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542522,119,930 - 22,279,006 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542522,120,507 - 22,281,221 (+)NCBIChiLan1.0ChiLan1.0
ARSB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38578,777,209 - 78,985,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl578,777,209 - 78,986,087 (-)EnsemblGRCh38hg38GRCh38
GRCh37578,073,032 - 78,281,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36578,108,788 - 78,318,113 (-)NCBINCBI36Build 36hg18NCBI36
Build 34578,147,295 - 78,317,522NCBI
Celera573,966,272 - 74,175,272 (-)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef573,279,833 - 73,488,328 (-)NCBIHuRef
CHM1_1577,506,051 - 77,714,858 (-)NCBICHM1_1
T2T-CHM13v2.0579,258,792 - 79,467,648 (-)NCBIT2T-CHM13v2.0
Arsb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391393,908,187 - 94,079,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1393,908,138 - 94,079,524 (+)EnsemblGRCm39 Ensembl
GRCm381393,771,679 - 93,943,016 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1393,771,630 - 93,943,016 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,541,634 - 94,712,971 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361394,872,512 - 95,041,668 (+)NCBIMGSCv36mm8
Celera1397,379,077 - 97,564,231 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.88NCBI
Arsb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,736,395 - 26,895,682 (+)NCBIGRCr8
mRatBN7.2225,002,210 - 25,162,675 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl225,002,346 - 25,162,671 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx232,029,775 - 32,188,228 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0230,130,038 - 30,288,496 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0224,954,935 - 25,113,379 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0223,385,154 - 23,543,028 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,385,183 - 23,544,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0242,559,079 - 42,717,753 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,067,560 - 24,223,821 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1223,988,194 - 24,144,190 (+)NCBI
Celera221,077,645 - 21,235,680 (+)NCBICelera
Cytogenetic Map2q12NCBI
ARSB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2436,319,804 - 36,528,385 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1534,473,431 - 34,682,012 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0536,325,581 - 36,534,371 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1536,804,874 - 37,023,746 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl536,804,874 - 37,023,739 (+)Ensemblpanpan1.1panPan2
ARSB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,870,111 - 28,034,906 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,870,151 - 28,034,906 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,107,602 - 29,273,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,790,052 - 27,973,468 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,790,052 - 27,958,957 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,726,564 - 27,892,579 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,705,072 - 27,870,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0328,031,550 - 28,197,915 (+)NCBIUU_Cfam_GSD_1.0
Arsb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213184,032,193 - 184,203,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365496,653,978 - 6,826,349 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365496,654,259 - 6,827,647 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARSB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl287,614,963 - 87,778,447 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1287,614,938 - 87,779,553 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2289,559,337 - 89,591,727 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARSB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1473,016,497 - 73,203,570 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl473,015,980 - 73,202,439 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604921,862,979 - 22,049,954 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arsb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248693,289,430 - 3,476,437 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248693,226,633 - 3,476,071 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019603   ⟹   ENSCLAP00000019411
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542522,119,930 - 22,279,006 (+)Ensembl
RefSeq Acc Id: XM_013514875   ⟹   XP_013370329
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542522,120,507 - 22,281,221 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370329 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019411
  ENSCLAP00000019411.1
Reference Protein Sequences
RefSeq Acc Id: XP_013370329   ⟸   XM_013514875
- UniProtKB: A0A8C2VRG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019411   ⟸   ENSCLAT00000019603
Protein Domains
Sulfatase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013316 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019603 ENTREZGENE
  ENSCLAT00000019603.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1120.10 UniProtKB/TrEMBL
  3.40.720.10 UniProtKB/TrEMBL
InterPro Alkaline_phosphatase_core_sf UniProtKB/TrEMBL
  ARSB UniProtKB/TrEMBL
  Sulfatase_CS UniProtKB/TrEMBL
  Sulfatase_N UniProtKB/TrEMBL
NCBI Gene Arsb ENTREZGENE
PANTHER ARYLSULFATASE UniProtKB/TrEMBL
  ARYLSULFATASE B UniProtKB/TrEMBL
Pfam Sulfatase UniProtKB/TrEMBL
PROSITE SULFATASE_1 UniProtKB/TrEMBL
  SULFATASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53649 UniProtKB/TrEMBL
UniProt A0A8C2VRG2 ENTREZGENE, UniProtKB/TrEMBL