Atp5f1a (ATP synthase F1 subunit alpha) - Rat Genome Database

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Gene: Atp5f1a (ATP synthase F1 subunit alpha) Chinchilla lanigera
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Symbol: Atp5f1a
Name: ATP synthase F1 subunit alpha
RGD ID: 9058261
Description: ENCODES a protein that exhibits ADP binding (ortholog); angiostatin binding (ortholog); ATP binding (ortholog); INVOLVED IN ATP biosynthetic process (ortholog); cellular response to dexamethasone stimulus (ortholog); cellular response to nitric oxide (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); combined oxidative phosphorylation deficiency 22 (ortholog); Endotoxemia (ortholog); FOUND IN cell surface (ortholog); COP9 signalosome (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP synthase subunit alpha, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle; Atp5a1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540231,651,960 - 31,662,762 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540231,652,226 - 31,662,114 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp5f1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540231,651,960 - 31,662,762 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540231,652,226 - 31,662,114 (-)NCBIChiLan1.0ChiLan1.0
ATP5F1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381846,080,248 - 46,104,227 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1846,080,248 - 46,104,334 (-)EnsemblGRCh38hg38GRCh38
GRCh371843,660,214 - 43,684,193 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361841,918,108 - 41,938,197 (-)NCBINCBI36Build 36hg18NCBI36
Build 341841,918,107 - 41,932,285NCBI
Celera1840,472,298 - 40,486,450 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1840,521,726 - 40,541,788 (-)NCBIHuRef
CHM1_11843,591,321 - 43,611,335 (-)NCBICHM1_1
T2T-CHM13v2.01846,271,209 - 46,295,188 (-)NCBIT2T-CHM13v2.0
Atp5f1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391877,861,468 - 77,870,569 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1877,861,429 - 77,870,569 (+)EnsemblGRCm39 Ensembl
GRCm381877,773,768 - 77,782,869 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1877,773,729 - 77,782,869 (+)EnsemblGRCm38mm10GRCm38
MGSCv371878,012,507 - 78,021,608 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361877,978,093 - 77,986,942 (+)NCBIMGSCv36mm8
Celera1878,959,749 - 78,968,850 (+)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1852.38NCBI
Atp5f1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81873,567,537 - 73,575,473 (+)NCBIGRCr8
mRatBN7.21871,292,406 - 71,300,342 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1871,292,374 - 71,300,794 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1873,391,830 - 73,399,766 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01874,061,095 - 74,069,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01871,917,686 - 71,925,622 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01874,156,553 - 74,164,490 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1874,156,553 - 74,164,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01873,830,604 - 73,838,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41874,735,267 - 74,743,088 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11874,808,539 - 74,816,361 (+)NCBI
Celera1869,811,132 - 69,819,068 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
ATP5F1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21763,508,983 - 63,523,359 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11849,201,584 - 49,215,960 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01839,366,384 - 39,380,514 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11842,904,136 - 42,918,626 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1842,904,136 - 42,923,326 (-)Ensemblpanpan1.1panPan2
ATP5F1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1745,118,188 - 45,127,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl745,117,657 - 45,127,048 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha744,600,134 - 44,608,995 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0745,071,120 - 45,079,950 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl745,071,075 - 45,079,951 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1744,770,243 - 44,779,076 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0744,823,645 - 44,832,526 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0745,108,044 - 45,116,902 (+)NCBIUU_Cfam_GSD_1.0
Atp5f1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494441,415,655 - 41,425,434 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936517742,791 - 753,336 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936517743,036 - 752,836 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl195,733,090 - 95,750,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1195,738,789 - 95,750,835 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21105,944,306 - 105,955,798 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11834,815,924 - 34,828,052 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1834,816,027 - 34,830,924 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660509,183,131 - 9,195,639 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5f1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247789,773,064 - 9,784,533 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247789,773,365 - 9,784,564 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000021266   ⟹   ENSCLAP00000021065
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540231,651,960 - 31,662,762 (-)Ensembl
RefSeq Acc Id: XM_005372864   ⟹   XP_005372921
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540231,652,226 - 31,662,114 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005372921 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021065
  ENSCLAP00000021065.1
RefSeq Acc Id: XP_005372921   ⟸   XM_005372864
- UniProtKB: A0A8C2YSZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021065   ⟸   ENSCLAT00000021266

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014431 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021266 ENTREZGENE
  ENSCLAT00000021266.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.150.20 UniProtKB/TrEMBL
  2.40.30.20 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro ATP_synth_asu-like_sf UniProtKB/TrEMBL
  ATP_synth_asu_C UniProtKB/TrEMBL
  ATP_synth_asu_C_sf UniProtKB/TrEMBL
  ATP_synth_F1_a UniProtKB/TrEMBL
  ATP_synth_F1_asu UniProtKB/TrEMBL
  ATPase_a/bsu_AS UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_N UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_N_sf UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_nucl-bd UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Atp5a1 ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UniProtKB/TrEMBL
  ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ATP-synt_ab UniProtKB/TrEMBL
  ATP-synt_ab_C UniProtKB/TrEMBL
  ATP-synt_ab_N UniProtKB/TrEMBL
PIRSF F_ATPase_subunit_alpha UniProtKB/TrEMBL
PROSITE ATPASE_ALPHA_BETA UniProtKB/TrEMBL
Superfamily-SCOP C-terminal domain of alpha and beta subunits of F1 ATP synthase UniProtKB/TrEMBL
  SSF50615 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2YSZ7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 Atp5f1a  ATP synthase F1 subunit alpha  Atp5a1  ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle  Symbol and/or name change 5135510 APPROVED