Psmd4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4) - Rat Genome Database

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Gene: Psmd4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4) Chinchilla lanigera
Analyze
Symbol: Psmd4
Name: proteasome 26S subunit ubiquitin receptor, non-ATPase 4 (Ensembl:proteasome 26S subunit, non-ATPase 4)
RGD ID: 9055972
Description: ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); proteasome accessory complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S proteasome non-ATPase regulatory subunit 4; proteasome (prosome, macropain) 26S subunit, non-ATPase, 4; proteasome 26S subunit, non-ATPase 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588607,289 - 618,040 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955588607,763 - 618,040 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Psmd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588607,289 - 618,040 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955588607,763 - 618,040 (+)NCBIChiLan1.0ChiLan1.0
PSMD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,254,734 - 151,267,479 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,254,709 - 151,267,479 (+)EnsemblGRCh38hg38GRCh38
GRCh371151,227,210 - 151,239,955 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,493,821 - 149,506,579 (+)NCBINCBI36Build 36hg18NCBI36
Build 341148,040,269 - 148,053,009NCBI
Celera1124,342,487 - 124,355,245 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,605,087 - 122,617,599 (+)NCBIHuRef
CHM1_11152,622,543 - 152,635,314 (+)NCBICHM1_1
T2T-CHM13v2.01150,378,457 - 150,391,195 (+)NCBIT2T-CHM13v2.0
Psmd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,939,999 - 94,949,880 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,940,005 - 94,949,925 (-)EnsemblGRCm39 Ensembl
GRCm38395,032,688 - 95,042,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,032,694 - 95,042,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37394,836,627 - 94,846,467 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,118,109 - 95,127,949 (-)NCBIMGSCv36mm8
Celera396,463,952 - 96,473,791 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Psmd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,287,941 - 185,297,238 (-)NCBIGRCr8
mRatBN7.22182,598,934 - 182,608,250 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,598,934 - 182,608,194 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,263,615 - 190,272,886 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,059,515 - 188,068,785 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02182,896,092 - 182,905,363 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02196,198,303 - 196,207,569 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,198,038 - 196,207,560 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,692,987 - 215,702,253 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,933,161 - 189,942,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12189,892,568 - 189,903,313 (-)NCBI
Celera2175,140,978 - 175,150,251 (-)NCBICelera
Cytogenetic Map2q34NCBI
PSMD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,566,214 - 98,578,993 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,317,447 - 98,330,226 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,603,753 - 126,616,553 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,251,323 - 130,264,257 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,251,323 - 130,264,256 (+)Ensemblpanpan1.1panPan2
PSMD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,306,134 - 60,313,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,306,229 - 60,313,610 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,749,765 - 59,757,144 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,322,307 - 61,329,783 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,322,391 - 61,329,776 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,151,041 - 60,158,407 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,236,561 - 60,243,942 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,964,850 - 60,972,228 (+)NCBIUU_Cfam_GSD_1.0
Psmd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,426,796 - 22,439,898 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,456,958 - 1,471,303 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,457,232 - 1,470,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,994,065 - 98,004,688 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,994,060 - 98,004,727 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,246,846 - 107,257,503 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap4q21-q23NCBI
PSMD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,424,557 - 12,434,929 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603811,999,288 - 12,012,694 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,600,021 - 18,610,014 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,600,021 - 18,609,887 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000848   ⟹   ENSCLAP00000000811
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955588607,289 - 618,040 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000000849   ⟹   ENSCLAP00000000812
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955588615,554 - 617,902 (+)Ensembl
RefSeq Acc Id: XM_005414507   ⟹   XP_005414564
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955588607,763 - 618,040 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005414508   ⟹   XP_005414565
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955588607,763 - 618,040 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414564 (Get FASTA)   NCBI Sequence Viewer  
  XP_005414565 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000811
  ENSCLAP00000000811.1
  ENSCLAP00000000812.1
Reference Protein Sequences
RefSeq Acc Id: XP_005414564   ⟸   XM_005414507
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005414565   ⟸   XM_005414508
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000811   ⟸   ENSCLAT00000000848
RefSeq Acc Id: ENSCLAP00000000812   ⟸   ENSCLAT00000000849
Protein Domains
VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000632 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000848 ENTREZGENE
  ENSCLAT00000000848.1 UniProtKB/TrEMBL
  ENSCLAT00000000849.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
  6.10.250.380 UniProtKB/TrEMBL
  6.10.300.40 UniProtKB/TrEMBL
InterPro PSMD4_RAZUL-like UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene Psmd4 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 UniProtKB/TrEMBL
  26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 UniProtKB/TrEMBL
Pfam UIM UniProtKB/TrEMBL
  VWA_2 UniProtKB/TrEMBL
PROSITE UIM UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART UIM UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A8C2UH02 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UJ70_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-02 Psmd4  proteasome 26S subunit ubiquitin receptor, non-ATPase 4  Psmd4  proteasome 26S subunit, non-ATPase 4  Symbol and/or name change 5135510 APPROVED
2015-08-25 Psmd4  proteasome 26S subunit, non-ATPase 4    proteasome (prosome, macropain) 26S subunit, non-ATPase, 4  Symbol and/or name change 5135510 APPROVED