Elovl6 (ELOVL fatty acid elongase 6) - Rat Genome Database

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Gene: Elovl6 (ELOVL fatty acid elongase 6) Chinchilla lanigera
Analyze
Symbol: Elovl6
Name: ELOVL fatty acid elongase 6
RGD ID: 9026268
Description: ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation (ortholog); fatty acid elongation, monounsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); genetic disease (ortholog); obesity (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); fatty acid elongase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation of very long chain fatty acids protein 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955496179,977 - 301,918 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955496179,634 - 301,908 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Elovl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955496179,977 - 301,918 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955496179,634 - 301,908 (+)NCBIChiLan1.0ChiLan1.0
ELOVL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384110,045,846 - 110,199,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4110,045,846 - 110,199,199 (-)EnsemblGRCh38hg38GRCh38
GRCh374110,967,002 - 111,119,771 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364111,189,992 - 111,339,220 (-)NCBINCBI36Build 36hg18NCBI36
Build 344111,328,146 - 111,477,375NCBI
Celera4108,263,951 - 108,413,724 (-)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4106,702,334 - 106,852,302 (-)NCBIHuRef
CHM1_14110,946,738 - 111,096,521 (-)NCBICHM1_1
T2T-CHM13v2.04113,347,937 - 113,501,499 (-)NCBIT2T-CHM13v2.0
Elovl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393129,326,035 - 129,432,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3129,326,004 - 129,432,144 (+)EnsemblGRCm39 Ensembl
GRCm383129,532,386 - 129,638,495 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3129,532,355 - 129,638,495 (+)EnsemblGRCm38mm10GRCm38
MGSCv373129,235,304 - 129,341,413 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363129,524,461 - 129,630,513 (+)NCBIMGSCv36mm8
Celera3136,042,332 - 136,148,508 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map358.05NCBI
Elovl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82220,738,095 - 220,845,528 (+)NCBIGRCr8
mRatBN7.22218,063,682 - 218,174,767 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2218,063,804 - 218,171,186 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2225,752,305 - 225,859,685 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02223,651,982 - 223,759,367 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02218,509,650 - 218,617,033 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02234,187,490 - 234,296,124 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2234,189,105 - 234,296,145 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2234,375,315 - 234,483,149 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02253,509,516 - 253,616,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42226,946,573 - 227,054,321 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12226,933,252 - 227,041,003 (+)NCBI
Celera2210,356,634 - 210,462,671 (+)NCBICelera
Cytogenetic Map2q43NCBI
ELOVL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23108,141,343 - 108,290,699 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14108,434,611 - 108,583,959 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04102,545,815 - 102,695,536 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14113,112,941 - 113,260,883 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4113,110,466 - 113,260,444 (-)Ensemblpanpan1.1panPan2
ELOVL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13230,221,858 - 30,360,761 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3230,224,252 - 30,360,138 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3211,669,501 - 11,810,012 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03230,443,342 - 30,581,564 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3230,394,846 - 30,581,340 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13230,436,830 - 30,574,542 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03230,180,868 - 30,318,794 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,529,507 - 9,670,539 (+)NCBIUU_Cfam_GSD_1.0
Elovl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530110,606,241 - 10,727,558 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365631,221,233 - 1,344,810 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365631,224,392 - 1,344,707 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOVL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8112,027,054 - 112,191,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18112,038,670 - 112,190,079 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28120,119,621 - 120,219,554 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELOVL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1757,949,910 - 58,095,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603736,623,125 - 36,769,288 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elovl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248384,468,192 - 4,593,556 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248384,469,321 - 4,593,919 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004531   ⟹   ENSCLAP00000004447
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955496179,977 - 301,918 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004532   ⟹   ENSCLAP00000004448
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955496180,282 - 296,557 (+)Ensembl
RefSeq Acc Id: XM_005406181   ⟹   XP_005406238
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955496180,026 - 301,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005406182   ⟹   XP_005406239
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955496179,634 - 301,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505419   ⟹   XP_013360873
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955496179,739 - 301,908 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406238 (Get FASTA)   NCBI Sequence Viewer  
  XP_005406239 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360873 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004447
  ENSCLAP00000004447.1
  ENSCLAP00000004448.1
Reference Protein Sequences
RefSeq Acc Id: XP_005406239   ⟸   XM_005406182
- UniProtKB: A0A8C2UQQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005406238   ⟸   XM_005406181
- UniProtKB: A0A8C2UQQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360873   ⟸   XM_013505419
- UniProtKB: A0A8C2UQQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004448   ⟸   ENSCLAT00000004532
RefSeq Acc Id: ENSCLAP00000004447   ⟸   ENSCLAT00000004531


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003163 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004531 ENTREZGENE
  ENSCLAT00000004531.1 UniProtKB/TrEMBL
  ENSCLAT00000004532.1 UniProtKB/TrEMBL
InterPro ELO_CS UniProtKB/TrEMBL
  ELO_fam UniProtKB/TrEMBL
  ELOVL6 UniProtKB/TrEMBL
NCBI Gene Elovl6 ENTREZGENE
PANTHER PTHR11157 UniProtKB/TrEMBL
  PTHR11157:SF125 UniProtKB/TrEMBL
Pfam ELO UniProtKB/TrEMBL
PROSITE ELO UniProtKB/TrEMBL
UniProt A0A8C2UQQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UQQ7_CHILA UniProtKB/TrEMBL