Psma5 (proteasome 20S subunit alpha 5) - Rat Genome Database

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Gene: Psma5 (proteasome 20S subunit alpha 5) Chinchilla lanigera
Analyze
Symbol: Psma5
Name: proteasome 20S subunit alpha 5
RGD ID: 9007428
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome (prosome, macropain) subunit, alpha type, 5; proteasome subunit alpha 5; proteasome subunit alpha type-5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,822,707 - 12,846,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,823,137 - 12,845,631 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Psma5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,822,707 - 12,846,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,823,137 - 12,845,631 (-)NCBIChiLan1.0ChiLan1.0
PSMA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,399,042 - 109,426,448 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,399,042 - 109,426,448 (-)EnsemblGRCh38hg38GRCh38
GRCh371109,941,664 - 109,969,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,745,995 - 109,770,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 341109,656,514 - 109,681,079NCBI
Celera1108,213,830 - 108,238,396 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,834,893 - 107,862,352 (-)NCBIHuRef
CHM1_11110,056,490 - 110,083,948 (-)NCBICHM1_1
T2T-CHM13v2.01109,431,823 - 109,459,233 (-)NCBIT2T-CHM13v2.0
Psma5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,164,242 - 108,187,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,164,242 - 108,187,290 (+)EnsemblGRCm39 Ensembl
GRCm383108,256,926 - 108,279,952 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,256,926 - 108,279,974 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,059,844 - 108,082,870 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,385,267 - 108,408,029 (+)NCBIMGSCv36mm8
Celera3110,590,430 - 110,613,444 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map346.89NCBI
Psma5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,584,502 - 198,607,867 (+)NCBIGRCr8
mRatBN7.22195,896,369 - 195,919,733 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,896,365 - 195,919,731 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,539,210 - 203,562,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,421,318 - 201,445,023 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,238,271 - 196,261,980 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,050,344 - 211,073,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,050,360 - 211,073,714 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,519,722 - 230,543,040 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,825,060 - 203,848,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12203,787,813 - 203,811,132 (+)NCBI
Celera2188,541,236 - 188,564,598 (+)NCBICelera
Cytogenetic Map2q34NCBI
LOC100972383
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,878,199 - 117,902,808 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,038,139 - 117,062,730 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,776,428 - 111,803,827 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,013,553 - 111,031,944 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1111,015,365 - 111,031,944 (-)Ensemblpanpan1.1panPan2
PSMA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,425,590 - 42,450,074 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,425,624 - 42,449,925 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,200,468 - 45,224,273 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,756,247 - 42,780,052 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,756,272 - 42,780,048 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,489,005 - 42,513,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,446,865 - 42,470,654 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,881,892 - 42,905,703 (+)NCBIUU_Cfam_GSD_1.0
Psma5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,185,778 - 19,208,874 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704905,248 - 929,215 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704905,277 - 928,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,662,692 - 110,717,290 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,695,429 - 110,717,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,153,782 - 121,168,609 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.24121,219,893 - 121,225,930 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap4q15-q16NCBI
PSMA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,120,613 - 24,146,369 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,120,562 - 24,148,736 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,313,802 - 34,339,484 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,122,928 - 5,148,911 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,127,271 - 5,148,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008186   ⟹   ENSCLAP00000008064
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543512,822,707 - 12,846,296 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008187   ⟹   ENSCLAP00000008065
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543512,823,309 - 12,841,288 (-)Ensembl
RefSeq Acc Id: XM_005388853   ⟹   XP_005388910
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543512,823,137 - 12,845,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516454   ⟹   XP_013371908
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543512,823,312 - 12,845,631 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388910 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371908 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008064
  ENSCLAP00000008064.1
  ENSCLAP00000008065.1
Reference Protein Sequences
RefSeq Acc Id: XP_005388910   ⟸   XM_005388853
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLT0 (UniProtKB/TrEMBL),   A0A8C2V0D5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371908   ⟸   XM_013516454
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V0D5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000008064   ⟸   ENSCLAT00000008186
RefSeq Acc Id: ENSCLAP00000008065   ⟸   ENSCLAT00000008187
Protein Domains
Proteasome alpha-type subunits


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008186 ENTREZGENE
  ENSCLAT00000008186.1 UniProtKB/TrEMBL
  ENSCLAT00000008187.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_alpha-type UniProtKB/TrEMBL
  Proteasome_alpha_type_5 UniProtKB/TrEMBL
  Proteasome_asu_N UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
NCBI Gene Psma5 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA TYPE-5 UniProtKB/TrEMBL
  PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
  Proteasome_A_N UniProtKB/TrEMBL
PROSITE PROTEASOME_ALPHA_1 UniProtKB/TrEMBL
  PROTEASOME_ALPHA_2 UniProtKB/TrEMBL
SMART Proteasome_A_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A8C2V0D5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YLT0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Psma5  proteasome 20S subunit alpha 5  Psma5  proteasome subunit alpha 5  Symbol and/or name change 5135510 APPROVED
2015-08-25 Psma5  proteasome subunit alpha 5    proteasome (prosome, macropain) subunit, alpha type, 5  Symbol and/or name change 5135510 APPROVED