Chkb (choline kinase beta) - Rat Genome Database

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Gene: Chkb (choline kinase beta) Chinchilla lanigera
Analyze
Symbol: Chkb
Name: choline kinase beta
RGD ID: 9002953
Description: ENCODES a protein that exhibits choline kinase activity (ortholog); ethanolamine kinase activity (ortholog); INVOLVED IN phosphatidylethanolamine biosynthetic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: choline/ethanolamine kinase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,588,600 - 33,591,758 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,588,375 - 33,592,054 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Chkb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,588,600 - 33,591,758 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,588,375 - 33,592,054 (-)NCBIChiLan1.0ChiLan1.0
CHKB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,578,963 - 50,582,849 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,578,959 - 50,601,455 (-)EnsemblGRCh38hg38GRCh38
GRCh372251,017,392 - 51,021,278 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,364,253 - 49,368,260 (-)NCBINCBI36Build 36hg18NCBI36
Celera2234,893,420 - 34,897,461 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,908,386 - 33,912,427 (-)NCBIHuRef
CHM1_12250,976,120 - 50,980,161 (-)NCBICHM1_1
T2T-CHM13v2.02251,089,491 - 51,093,377 (-)NCBIT2T-CHM13v2.0
Gm44502
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,300,608 - 89,314,130 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,300,608 - 89,313,899 (-)EnsemblGRCm39 Ensembl
GRCm381589,416,405 - 89,429,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,416,405 - 89,429,696 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,246,836 - 89,260,127 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1591,545,496 - 91,558,759 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.89NCBI
Chkb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,380,592 - 122,385,102 (-)NCBIGRCr8
mRatBN7.27120,500,960 - 120,504,359 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,500,984 - 120,504,461 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,252,940 - 122,256,295 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,479,088 - 124,482,443 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,441,149 - 124,444,504 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,404,818 - 130,408,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,404,832 - 130,408,187 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,089,639 - 130,093,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,746,749 - 127,750,104 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,780,978 - 127,784,334 (-)NCBI
Celera7116,973,588 - 116,976,943 (-)NCBICelera
RH 3.4 Map7949.5RGD
Cytogenetic Map7q34NCBI
CHKB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,498,901 - 60,502,784 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,189,483 - 63,193,549 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,825,128 - 30,829,203 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,936,470 - 49,940,625 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,936,470 - 49,940,625 (-)Ensemblpanpan1.1panPan2
CHKB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,733,071 - 16,736,797 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,733,095 - 16,736,758 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,710,701 - 16,714,430 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,459,391 - 17,463,120 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,459,328 - 17,463,931 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,183,779 - 17,187,508 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,506,808 - 17,510,537 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,638,970 - 17,642,699 (+)NCBIUU_Cfam_GSD_1.0
Chkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945242,891 - 246,731 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629243,095 - 247,093 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629242,876 - 246,806 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHKB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5151,638 - 155,176 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15151,638 - 155,176 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHKB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11933,055,296 - 33,059,442 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1933,055,294 - 33,059,230 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,282,539 - 92,286,806 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chkb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752187,956 - 191,137 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752187,544 - 191,330 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000024805   ⟹   ENSCLAP00000024568
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541333,588,600 - 33,591,758 (-)Ensembl
RefSeq Acc Id: XM_005379593   ⟹   XP_005379650
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541333,588,375 - 33,592,054 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379594   ⟹   XP_005379651
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541333,588,375 - 33,592,054 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379650 (Get FASTA)   NCBI Sequence Viewer  
  XP_005379651 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024568
  ENSCLAP00000024568.1
RefSeq Acc Id: XP_005379651   ⟸   XM_005379594
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005379650   ⟸   XM_005379593
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W3B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024568   ⟸   ENSCLAT00000024805


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016876 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024805 ENTREZGENE
  ENSCLAT00000024805.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1200.10 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Chkb ENTREZGENE
PANTHER CHOLINE/ETHANOALAMINE KINASE UniProtKB/TrEMBL
  PTHR22603:SF35 UniProtKB/TrEMBL
Pfam Choline_kinase UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2W3B8 ENTREZGENE, UniProtKB/TrEMBL